mRNA_P-wetherbeei_contig2034.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2034.3.1
Unique NamemRNA_P-wetherbeei_contig2034.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2034.3.1 vs. uniprot
Match: D8LTQ1_ECTSI (DNA replication complex GINS protein SLD5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ1_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 3.590e-20
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = 1 
Query:    1 ELAYARDYHRILEDHFRAECLDALPPAFQSLRN-SREERVAAEPDLDRFVVCRANRDLGSVQIDDAAGAYDRGXXXXXXXXGHVQMPQGSVNVLRYRPVRDFVLAGEIDLM 330
            E  +A+ Y  +LEDHF   CL  +P  F+SL N S+EE +  EP+LD FVVCRA  D+G VQI +AAG  +            + + QG + ++RYRP+R  VL G +DL+
Sbjct:  136 EREHAKGYVDMLEDHFTRTCLSQMPSNFRSLTNTSQEENMVQEPNLDTFVVCRARDDVGLVQIGEAAGREE----------SSMDLRQGDMFIVRYRPIRTLVLGGRVDLI 236
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BLAST of mRNA_P-wetherbeei_contig2034.3.1 vs. uniprot
Match: A0A6H5KSS9_9PHAE (DNA replication complex GINS protein SLD5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSS9_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 5.040e-20
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = 1 
Query:    1 ELAYARDYHRILEDHFRAECLDALPPAFQSLRN-SREERVAAEPDLDRFVVCRANRDLGSVQIDDAAGAYDRGXXXXXXXXGHVQMPQGSVNVLRYRPVRDFVLAGEIDLM 330
            E  +A+ Y  +LEDHF   CL  +P  F+SL N S+EE +  EP+LD FVVCRA  D+G VQI +AAG  +            + + QG + ++RYRP+R  VL G +DL+
Sbjct:  136 EREHAKGYVDMLEDHFTRTCLSQMPSNFRSLTNTSQEENMVQEPNLDTFVVCRARDDVGLVQIGEAAGREE----------SSMDLRQGDMFIVRYRPIRTLVLEGRVDLI 236
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BLAST of mRNA_P-wetherbeei_contig2034.3.1 vs. uniprot
Match: A0A836CPL9_9STRA (DNA replication complex GINS protein SLD5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPL9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 7.080e-14
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 1 
Query:    1 ELAYARDYHRILEDHFRAECLDALPPAFQSLRNSRE-ERVAAEPDLDRFVVCRANRDLGSVQIDDAAGAYDRGXXXXXXXXGHVQMPQGSVNVLRYRPVRDFVLAGEIDLM 330
            EL YA+ Y  +L  H ++  LD LP A+  +R+     ++ AEPDLD FVVCR   D+G V+I     +              +++  G   V+RYRP+RDFVL G I+L+
Sbjct:  187 ELTYAKVYCDLLHGHLQSTVLDHLPDAYADIRSQAGGAQIIAEPDLDVFVVCRVVEDVGVVEISAEQNSQ-------------IELRAGDEYVMRYRPIRDFVLDGSIELI 284
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BLAST of mRNA_P-wetherbeei_contig2034.3.1 vs. uniprot
Match: W4GLW1_9STRA (DNA replication complex GINS protein SLD5 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GLW1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.100e-10
Identity = 42/110 (38.18%), Postives = 55/110 (50.00%), Query Frame = 1 
Query:    1 ELAYARDYHRILEDHFRAECLDALPPAFQSLRNSREERVAAEPDLDRFVVCRANRDLGSVQIDDAAGAYDRGXXXXXXXXGHVQMPQGSVNVLRYRPVRDFVLAGEIDLM 330
            E+ YA  Y  + E H R   L  LPP  Q L    E  +   PDLD FV C++N+D+G+VQID      DRG         HV   +   +VLRYR V   V  G++ L+
Sbjct:  114 EVDYAHSYKDLYESHCRDLLLSKLPPDHQQLD---EPHMIDHPDLDTFVFCQSNQDIGNVQID------DRGSE-------HVNARKDDRHVLRYRVVSSLVEEGKVKLL 207
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BLAST of mRNA_P-wetherbeei_contig2034.3.1 vs. uniprot
Match: W4GMA3_9STRA (DNA replication complex GINS protein SLD5 n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMA3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.440e-10
Identity = 42/110 (38.18%), Postives = 55/110 (50.00%), Query Frame = 1 
Query:    1 ELAYARDYHRILEDHFRAECLDALPPAFQSLRNSREERVAAEPDLDRFVVCRANRDLGSVQIDDAAGAYDRGXXXXXXXXGHVQMPQGSVNVLRYRPVRDFVLAGEIDLM 330
            E+ YA  Y  + E H R   L  LPP  Q L    E  +   PDLD FV C++N+D+G+VQID      DRG         HV   +   +VLRYR V   V  G++ L+
Sbjct:  134 EVDYAHSYKDLYESHCRDLLLSKLPPDHQQLD---EPHMIDHPDLDTFVFCQSNQDIGNVQID------DRGSE-------HVNARKDDRHVLRYRVVSSLVEEGKVKLL 227
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BLAST of mRNA_P-wetherbeei_contig2034.3.1 vs. uniprot
Match: K2S8M4_MACPH (DNA replication complex GINS protein SLD5 n=1 Tax=Macrophomina phaseolina (strain MS6) TaxID=1126212 RepID=K2S8M4_MACPH)

HSP 1 Score: 58.9 bits (141), Expect = 3.150e-8
Identity = 38/111 (34.23%), Postives = 54/111 (48.65%), Query Frame = 1 
Query:    1 ELAYARDYHRILEDHFRAECLDALPPAFQSLRNSREE-RVAAEPDLDRFVVCRANRDLGSVQIDDAAGAYDRGXXXXXXXXGHVQMPQGSVNVLRYRPVRDFVLAGEIDLM 330
            E  Y   +  +L  H+ A  L + PP  Q L +      +   PDLD  V CR  RD+G V +    G  D            V+M +G V V+R+R VR+ VLAG+I+L+
Sbjct:  108 ERQYLEQHQALLSQHYAASFLSSFPPQLQRLDDKAGGISMIDTPDLDTAVFCRVLRDIGVVSV----GGVDEDR--------EVEMKRGDVLVVRWRVVRERVLAGDIELI 206
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BLAST of mRNA_P-wetherbeei_contig2034.3.1 vs. uniprot
Match: A0A2R6PW62_ACTCC (DNA replication complex GINS protein SLD5 n=2 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6PW62_ACTCC)

HSP 1 Score: 56.6 bits (135), Expect = 2.990e-7
Identity = 33/114 (28.95%), Postives = 55/114 (48.25%), Query Frame = 1 
Query:    1 ELAYARDYHRILEDHFRAECLDALPPAFQSLRN----SREERVAAEPDLDRFVVCRANRDLGSVQIDDAAGAYDRGXXXXXXXXGHVQMPQGSVNVLRYRPVRDFVLAGEIDLM 330
            E  +A    + LE+HF    L  LP  ++S       S E+ +  EP LD +V+CR NR LG++Q+D+      R           V +    +  +RY+ ++  V  G+I+L+
Sbjct:  125 EQTFANRCIKDLEEHFDKSVLSKLPDRYKSSLKQSVISEEDDMVPEPQLDTYVICRTNRSLGALQLDNR-----RNLLSCSGVEDPVDLNTNDLYAVRYKSIKPLVYCGQINLV 233
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BLAST of mRNA_P-wetherbeei_contig2034.3.1 vs. uniprot
Match: A0A1V9YPT1_9STRA (DNA replication complex GINS protein SLD5 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPT1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 4.690e-7
Identity = 38/110 (34.55%), Postives = 52/110 (47.27%), Query Frame = 1 
Query:    1 ELAYARDYHRILEDHFRAECLDALPPAFQSLRNSREERVAAEPDLDRFVVCRANRDLGSVQIDDAAGAYDRGXXXXXXXXGHVQMPQGSVNVLRYRPVRDFVLAGEIDLM 330
            E+ YA  Y  +LE HF    L   P   + L       +   PDLD FV C++  D+G VQ D      DRG         H+ + +G  +VLRYR V+ FV  G + L+
Sbjct:  118 EVDYATKYLEMLESHFNDLALSKFPLEQRKLD---APDMIDTPDLDLFVFCQSQEDIGQVQCD------DRGAE-------HINVRKGDRHVLRYRAVQSFVNDGTMALL 211
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BLAST of mRNA_P-wetherbeei_contig2034.3.1 vs. uniprot
Match: A0A024GPQ5_9STRA (DNA replication complex GINS protein SLD5 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GPQ5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.230e-6
Identity = 32/110 (29.09%), Postives = 56/110 (50.91%), Query Frame = 1 
Query:    1 ELAYARDYHRILEDHFRAECLDALPPAFQSLRNSREERVAAEPDLDRFVVCRANRDLGSVQIDDAAGAYDRGXXXXXXXXGHVQMPQGSVNVLRYRPVRDFVLAGEIDLM 330
            E  YA+ +  ++  H     L  +P   QSL +   E +A+EP+LD FV C++  ++G V+ DD    +             VQ+ +   +V+RYR + +FV + +I L+
Sbjct:  116 ERIYAQQHAALVATHLNNAALSKIPDEHQSLDS---EGMASEPNLDEFVFCQSQGEVGQVRCDDRGAEF-------------VQVREKDRHVIRYRSIDNFVKSNQIFLI 209
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BLAST of mRNA_P-wetherbeei_contig2034.3.1 vs. uniprot
Match: A0A8H4N767_9PEZI (Protein-tyrosine-phosphatase n=1 Tax=Botryosphaeria dothidea TaxID=55169 RepID=A0A8H4N767_9PEZI)

HSP 1 Score: 54.7 bits (130), Expect = 2.540e-6
Identity = 37/111 (33.33%), Postives = 53/111 (47.75%), Query Frame = 1 
Query:    1 ELAYARDYHRILEDHFRAECLDALPPAFQSLRNSREE-RVAAEPDLDRFVVCRANRDLGSVQIDDAAGAYDRGXXXXXXXXGHVQMPQGSVNVLRYRPVRDFVLAGEIDLM 330
            E  Y   +  +L  H+    L + PP  Q L +      +   PDLD  V CR  RD+G V +       DR           V+M +G V V+R+R VR+ VLAG+I+L+
Sbjct:  593 ERQYLEQHQALLSQHYAVSFLSSFPPQLQRLDDKAGGISMIDAPDLDTAVFCRVLRDVGVVGV--GGVEEDR----------EVEMNRGDVLVVRWRVVRERVLAGDIELV 691
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2034.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LTQ1_ECTSI3.590e-2043.24DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
A0A6H5KSS9_9PHAE5.040e-2043.24DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
A0A836CPL9_9STRA7.080e-1437.84DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
W4GLW1_9STRA1.100e-1038.18DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
W4GMA3_9STRA1.440e-1038.18DNA replication complex GINS protein SLD5 n=9 Tax=... [more]
K2S8M4_MACPH3.150e-834.23DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
A0A2R6PW62_ACTCC2.990e-728.95DNA replication complex GINS protein SLD5 n=2 Tax=... [more]
A0A1V9YPT1_9STRA4.690e-734.55DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
A0A024GPQ5_9STRA1.230e-629.09DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
A0A8H4N767_9PEZI2.540e-633.33Protein-tyrosine-phosphatase n=1 Tax=Botryosphaeri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2034contigP-wetherbeei_contig2034:5904..6236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LTQ1
Preferred nameGINS4
PFAMsSLD5_C,Sld5
Model size333
Max annot lvl2759|Eukaryota
KEGG koko:K10735
KEGG ModuleM00286
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000727,GO:0000811,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006271,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009987,GO:0010564,GO:0022616,GO:0031261,GO:0031298,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0032993,GO:0033554,GO:0034641,GO:0034645,GO:0040007,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045787,GO:0045931,GO:0046483,GO:0048518,GO:0048522,GO:0048589,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051726,GO:0065007,GO:0070013,GO:0071704,GO:0090068,GO:0090304,GO:1900087,GO:1901360,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902806,GO:1902808,GO:2000045
Exons1
Evalue5.88e-21
EggNOG OGsCOG5086@1|root,KOG3176@2759|Eukaryota
Descriptiondouble-strand break repair via break-induced replication
Cds size333
COG categoryL
BRITEko00000,ko00002,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.9151404-CDS-P-wetherbeei_contig2034:5903..62361683186196.9151404-CDS-P-wetherbeei_contig2034:5903..6236Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2034 5904..6236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2034.3.1prot_P-wetherbeei_contig2034.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2034 5904..6236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2034.3.1

>prot_P-wetherbeei_contig2034.3.1 ID=prot_P-wetherbeei_contig2034.3.1|Name=mRNA_P-wetherbeei_contig2034.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
ELAYARDYHRILEDHFRAECLDALPPAFQSLRNSREERVAAEPDLDRFVV
CRANRDLGSVQIDDAAGAYDRGGGGGDDGGGHVQMPQGSVNVLRYRPVRD
FVLAGEIDLM*
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mRNA from alignment at P-wetherbeei_contig2034:5904..6236-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2034.3.1 ID=mRNA_P-wetherbeei_contig2034.3.1|Name=mRNA_P-wetherbeei_contig2034.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig2034:5904..6236- (Phaeothamnion wetherbeei SAG_119_79)
GAGCTGGCCTACGCCCGCGACTACCACAGGATCCTCGAGGACCACTTCCG
CGCCGAGTGCCTCGACGCTCTGCCGCCCGCCTTCCAGAGTTTGCGCAACT
CACGGGAGGAACGCGTTGCAGCGGAACCGGACCTAGACCGCTTCGTGGTC
TGCCGCGCAAACCGGGACCTCGGCAGCGTCCAGATCGACGACGCCGCTGG
GGCGTACGACAGGGGGGGGGGCGGCGGCGACGACGGTGGGGGGCACGTCC
AGATGCCGCAGGGGTCGGTTAATGTGCTGCGGTACCGGCCGGTGCGGGAC
TTTGTGCTGGCGGGAGAGATCGACTTGATGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2034:5904..6236-

>mRNA_P-wetherbeei_contig2034.3.1 ID=mRNA_P-wetherbeei_contig2034.3.1|Name=mRNA_P-wetherbeei_contig2034.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig2034:5904..6236- (Phaeothamnion wetherbeei SAG_119_79)
GAGCTGGCCTACGCCCGCGACTACCACAGGATCCTCGAGGACCACTTCCG
CGCCGAGTGCCTCGACGCTCTGCCGCCCGCCTTCCAGAGTTTGCGCAACT
CACGGGAGGAACGCGTTGCAGCGGAACCGGACCTAGACCGCTTCGTGGTC
TGCCGCGCAAACCGGGACCTCGGCAGCGTCCAGATCGACGACGCCGCTGG
GGCGTACGACAGGGGGGGGGGCGGCGGCGACGACGGTGGGGGGCACGTCC
AGATGCCGCAGGGGTCGGTTAATGTGCTGCGGTACCGGCCGGTGCGGGAC
TTTGTGCTGGCGGGAGAGATCGACTTGATGTAG
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