mRNA_P-wetherbeei_contig20310.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20310.2.1
Unique NamemRNA_P-wetherbeei_contig20310.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20310.2.1 vs. uniprot
Match: A0A7Z9PSI7_9BACT (PilZ domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PSI7_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 1.500e-8
Identity = 35/86 (40.70%), Postives = 47/86 (54.65%), Query Frame = 1 
Query:   10 ERRRLVRLTCDFEGTSFFEGRPIHGRIRDISLGGMKFNGPVGLVNGQLLQVANPLPDVRSSDP-VRARIVWLRPPVGHTQDIGLQF 264
            ERRRLVRL+C+++   +   +  H  I+DISLGGMK      L  G  L+V+NP P     D  V A++ W R       + GLQF
Sbjct:   16 ERRRLVRLSCEYDVNCYQGNQIFHATIQDISLGGMKIEVTKQLEQGSELEVSNPNPTEGKGDQRVTAQVRWFRVNNAGKAEAGLQF 101
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20310.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7Z9PSI7_9BACT1.500e-840.70PilZ domain-containing protein n=1 Tax=Phycisphaer... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20310contigP-wetherbeei_contig20310:799..1062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size264
Hectar predicted targeting categoryother localisation
Exons1
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.4114778-CDS-P-wetherbeei_contig20310:798..10621683186196.4114778-CDS-P-wetherbeei_contig20310:798..1062Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20310 799..1062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20310.2.1prot_P-wetherbeei_contig20310.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20310 799..1062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20310.2.1

>prot_P-wetherbeei_contig20310.2.1 ID=prot_P-wetherbeei_contig20310.2.1|Name=mRNA_P-wetherbeei_contig20310.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
SPKERRRLVRLTCDFEGTSFFEGRPIHGRIRDISLGGMKFNGPVGLVNGQ
LLQVANPLPDVRSSDPVRARIVWLRPPVGHTQDIGLQF
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mRNA from alignment at P-wetherbeei_contig20310:799..1062-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20310.2.1 ID=mRNA_P-wetherbeei_contig20310.2.1|Name=mRNA_P-wetherbeei_contig20310.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig20310:799..1062- (Phaeothamnion wetherbeei SAG_119_79)
AGCCCCAAGGAACGTCGGCGCCTGGTTCGTCTAACTTGTGATTTCGAAGG
CACCTCATTTTTTGAAGGCCGGCCCATCCACGGTCGGATCCGCGACATCA
GCCTGGGCGGCATGAAGTTCAATGGCCCGGTTGGGCTCGTAAACGGTCAG
CTGCTGCAGGTAGCCAATCCGCTGCCCGACGTCCGCAGTAGCGACCCCGT
GCGTGCTCGTATCGTATGGCTGCGTCCTCCGGTGGGTCATACGCAGGACA
TCGGTCTTCAGTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20310:799..1062-

>mRNA_P-wetherbeei_contig20310.2.1 ID=mRNA_P-wetherbeei_contig20310.2.1|Name=mRNA_P-wetherbeei_contig20310.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig20310:799..1062- (Phaeothamnion wetherbeei SAG_119_79)
AGCCCCAAGGAACGTCGGCGCCTGGTTCGTCTAACTTGTGATTTCGAAGG
CACCTCATTTTTTGAAGGCCGGCCCATCCACGGTCGGATCCGCGACATCA
GCCTGGGCGGCATGAAGTTCAATGGCCCGGTTGGGCTCGTAAACGGTCAG
CTGCTGCAGGTAGCCAATCCGCTGCCCGACGTCCGCAGTAGCGACCCCGT
GCGTGCTCGTATCGTATGGCTGCGTCCTCCGGTGGGTCATACGCAGGACA
TCGGTCTTCAGTTC
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