mRNA_P-wetherbeei_contig20306.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20306.1.1
Unique NamemRNA_P-wetherbeei_contig20306.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20306.1.1 vs. uniprot
Match: A0A1Q7BCD3_9PROT (3-hydroxybutyrate dehydrogenase n=4 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A1Q7BCD3_9PROT)

HSP 1 Score: 352 bits (903), Expect = 3.990e-120
Identity = 183/259 (70.66%), Postives = 208/259 (80.31%), Query Frame = 1
Query:    1 MRLLGKVAIISGAASGIGKEIARAYRREGAKVVIADLD-RAXXXXXXXXXXXXXXXXXXXXXXXXXXXETAMARAVSAFGRIDVLVSNAGIQIVSPLDELAFAQWKLMLAVHLDGAFLTTRAALKLMYAQGTGGSVIYVGSVHSKEASLLKAPYVTAKHGLIGLAKVVAKEGARHGVRANVICPGFVRTPLVDRQIPEQAKALGLTEQQVIKNIMLKETVDGEFTTIEDVAEAAVFFASFGSNALTGQSLVVSHGWSMQ 774
            MRL  KVAI++GAASGIGKEIA+ + REGA+V IADL+ +A                           E  +AR V  FG+IDVLVSNAGIQIV+PLDE  FA WK +L++HLDGAFLTTRA L+ MY QGTGGS+IY+GSVHSKEASLLKAPYVTAKHGLIGLAKVVAKEGA+HGVRANVICPGFVRTPLVD+QIPEQAK LG++E +VIKN+MLK+TVDGEFTT++DVAE AVFFA F SNALTGQSLVVSHGW MQ
Sbjct:    1 MRLKDKVAIVTGAASGIGKEIAKTFVREGARVAIADLNQKAADAAAGELGDTRKALGVVMDVTNEQQVEAGVARTVEQFGKIDVLVSNAGIQIVAPLDEFKFADWKKLLSIHLDGAFLTTRAVLQRMYKQGTGGSIIYMGSVHSKEASLLKAPYVTAKHGLIGLAKVVAKEGAKHGVRANVICPGFVRTPLVDKQIPEQAKELGISEAEVIKNVMLKDTVDGEFTTVQDVAETAVFFAGFESNALTGQSLVVSHGWFMQ 259          
BLAST of mRNA_P-wetherbeei_contig20306.1.1 vs. uniprot
Match: A0A1H5PPH1_9HYPH (3-hydroxybutyrate dehydrogenase n=1 Tax=Rhizobiales bacterium GAS191 TaxID=1882830 RepID=A0A1H5PPH1_9HYPH)

HSP 1 Score: 352 bits (902), Expect = 5.860e-120
Identity = 183/260 (70.38%), Postives = 207/260 (79.62%), Query Frame = 1
Query:    1 MRLLGKVAIISGAASGIGKEIARAYRREGAKVVIADLDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXE--TAMARAVSAFGRIDVLVSNAGIQIVSPLDELAFAQWKLMLAVHLDGAFLTTRAALKLMYAQGTGGSVIYVGSVHSKEASLLKAPYVTAKHGLIGLAKVVAKEGARHGVRANVICPGFVRTPLVDRQIPEQAKALGLTEQQVIKNIMLKETVDGEFTTIEDVAEAAVFFASFGSNALTGQSLVVSHGWSMQ 774
            MRL  KVA+++GAASGIGKEIAR + REGAKVVIAD+D A                           E  T +  AV AFGRIDVLVSNAGIQ V+PLDE  F++WK ++A+HLDGAFLTTRAAL+ MY QG GGS+IY+GSVHSKEASLLKAPYVTAKHGLIGLAK VAKEGA++GVRANVICPGFVRTPLVD+QIPEQAK LG++E  VI  +MLKETVDGEFTT+EDVAEAA+FFA+F SNALTGQSLVVSHGW MQ
Sbjct:    1 MRLKDKVAVVTGAASGIGKEIARTFTREGAKVVIADVDSAGAKETAAELGAAERRALGVDMDVTNEAEVETGIGAAVEAFGRIDVLVSNAGIQTVAPLDEFKFSEWKKLIAIHLDGAFLTTRAALRQMYRQGNGGSIIYIGSVHSKEASLLKAPYVTAKHGLIGLAKTVAKEGAKNGVRANVICPGFVRTPLVDKQIPEQAKVLGISEDAVISKVMLKETVDGEFTTLEDVAEAALFFAAFNSNALTGQSLVVSHGWYMQ 260          
BLAST of mRNA_P-wetherbeei_contig20306.1.1 vs. uniprot
Match: A0A5J6MG39_9PROT (3-hydroxybutyrate dehydrogenase n=1 Tax=Hypericibacter terrae TaxID=2602015 RepID=A0A5J6MG39_9PROT)

HSP 1 Score: 348 bits (892), Expect = 1.950e-118
Identity = 182/260 (70.00%), Postives = 208/260 (80.00%), Query Frame = 1
Query:    1 MRLLGKVAIISGAASGIGKEIARAYRREGAKVVIADLDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXET--AMARAVSAFGRIDVLVSNAGIQIVSPLDELAFAQWKLMLAVHLDGAFLTTRAALKLMYAQGTGGSVIYVGSVHSKEASLLKAPYVTAKHGLIGLAKVVAKEGARHGVRANVICPGFVRTPLVDRQIPEQAKALGLTEQQVIKNIMLKETVDGEFTTIEDVAEAAVFFASFGSNALTGQSLVVSHGWSMQ 774
            MRL  KVA+++GAASGIGKEIA  + REGA VVIADL++A                           +    MA+AV+AFG IDVLVSNAGIQ V+P+DE  FA+WK +LA+HLDGAFLTTRAAL+ MY    GGSVIY+GSVHSKEAS LKAPYVTAKHGLIGLAKVVAKEGA+HGVRAN+ICPGFVRTPLVD+QIPEQAKALG+ E +V+KN+MLKETVDGEFTT +DVA+AA+FFASFGSNALTGQSLVVSHGW MQ
Sbjct:    1 MRLKNKVAVVTGAASGIGKEIATLFLREGANVVIADLNQAGADSVAAELAGPDKRAIGVGMDVTSEAQVDAGMAKAVAAFGGIDVLVSNAGIQTVAPIDEFDFAKWKQLLAIHLDGAFLTTRAALREMYRSDRGGSVIYMGSVHSKEASALKAPYVTAKHGLIGLAKVVAKEGAKHGVRANIICPGFVRTPLVDKQIPEQAKALGIPEAEVVKNVMLKETVDGEFTTADDVAQAALFFASFGSNALTGQSLVVSHGWFMQ 260          
BLAST of mRNA_P-wetherbeei_contig20306.1.1 vs. uniprot
Match: D3NRC7_AZOS1 (3-hydroxybutyrate dehydrogenase n=18 Tax=Azospirillum TaxID=191 RepID=D3NRC7_AZOS1)

HSP 1 Score: 347 bits (889), Expect = 5.370e-118
Identity = 182/260 (70.00%), Postives = 211/260 (81.15%), Query Frame = 1
Query:    1 MRLLGKVAIISGAASGIGKEIARAYRREGAKVVIADLDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXET--AMARAVSAFGRIDVLVSNAGIQIVSPLDELAFAQWKLMLAVHLDGAFLTTRAALKLMYAQGTGGSVIYVGSVHSKEASLLKAPYVTAKHGLIGLAKVVAKEGARHGVRANVICPGFVRTPLVDRQIPEQAKALGLTEQQVIKNIMLKETVDGEFTTIEDVAEAAVFFASFGSNALTGQSLVVSHGWSMQ 774
            MRL  KVA+I+GAASGIG EIAR + REGA VVIADL++A                           +    MARAV+AFGRID+LVSNAGIQ V+P+++  FA+W+ +L++HLDGAFLTTRAAL+ MYAQG GGS+IY+GSVHSKEAS LKAPYVTAKHGLIGLAKVVAKEGA HGVRANVICPGFVRTPLV++QIPEQAK LG++E+ V+K +MLKETVDGEFTT+EDVAEAA+FFASFGSNALTGQSLVVSHGW MQ
Sbjct:    1 MRLQDKVAVITGAASGIGLEIARTFAREGALVVIADLNQAGADAAAASLDPTGKRALGVAMNVTDEAQVDAGMARAVAAFGRIDILVSNAGIQTVAPVEQFEFAKWRQLLSIHLDGAFLTTRAALRTMYAQG-GGSIIYMGSVHSKEASALKAPYVTAKHGLIGLAKVVAKEGAAHGVRANVICPGFVRTPLVEKQIPEQAKELGISEEAVVKTVMLKETVDGEFTTVEDVAEAALFFASFGSNALTGQSLVVSHGWFMQ 259          
BLAST of mRNA_P-wetherbeei_contig20306.1.1 vs. uniprot
Match: UPI001BCB2A81 (3-hydroxybutyrate dehydrogenase n=1 Tax=Roseococcus sp. SDR TaxID=2835532 RepID=UPI001BCB2A81)

HSP 1 Score: 345 bits (885), Expect = 2.180e-117
Identity = 179/259 (69.11%), Postives = 207/259 (79.92%), Query Frame = 1
Query:    1 MRLLGKVAIISGAASGIGKEIARAYRREGAKVVIADLDRAXXXXXXXXXXXXXXXXXXXXXXXXXXX-ETAMARAVSAFGRIDVLVSNAGIQIVSPLDELAFAQWKLMLAVHLDGAFLTTRAALKLMYAQGTGGSVIYVGSVHSKEASLLKAPYVTAKHGLIGLAKVVAKEGARHGVRANVICPGFVRTPLVDRQIPEQAKALGLTEQQVIKNIMLKETVDGEFTTIEDVAEAAVFFASFGSNALTGQSLVVSHGWSMQ 774
            MR+  KVAI++GAASGIGKEIA  + REGAKVVIADL++A                            E  +A A++ FGRIDVLVSNAGIQ+VSPL+E  F +WKL+LA+HLDGAFLTTRA L+ MY +  GGS+IY+GSVHSKEAS LKAPYVTAKHGLIGLAK VAKEGA+HGVRANVICPGFVRTPLV++QIPEQAK  G++E +V+KNIMLKETVDGEFTT++DVAE A+FFASFGSNALTGQSLVVSHGW MQ
Sbjct:    1 MRMQDKVAIVTGAASGIGKEIAATFAREGAKVVIADLNKAAADAAALEMGGPDRAIGVAMDVTNEAQVEAGVAEALAKFGRIDVLVSNAGIQVVSPLEEFPFDKWKLLLAIHLDGAFLTTRAVLRHMYTRPGGGSIIYMGSVHSKEASQLKAPYVTAKHGLIGLAKTVAKEGAKHGVRANVICPGFVRTPLVEKQIPEQAKEFGISEAEVVKNIMLKETVDGEFTTVQDVAETALFFASFGSNALTGQSLVVSHGWFMQ 259          
BLAST of mRNA_P-wetherbeei_contig20306.1.1 vs. uniprot
Match: A0A1G0H8B5_9GAMM (3-hydroxybutyrate dehydrogenase n=1 Tax=Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_41_20 TaxID=1798283 RepID=A0A1G0H8B5_9GAMM)

HSP 1 Score: 342 bits (878), Expect = 2.360e-116
Identity = 175/258 (67.83%), Postives = 203/258 (78.68%), Query Frame = 1
Query:    1 MRLLGKVAIISGAASGIGKEIARAYRREGAKVVIADLDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXETAMARAVSAFGRIDVLVSNAGIQIVSPLDELAFAQWKLMLAVHLDGAFLTTRAALKLMYAQGTGGSVIYVGSVHSKEASLLKAPYVTAKHGLIGLAKVVAKEGARHGVRANVICPGFVRTPLVDRQIPEQAKALGLTEQQVIKNIMLKETVDGEFTTIEDVAEAAVFFASFGSNALTGQSLVVSHGWSMQ 774
            MRL GKVA+++GAASGIGKEIA  Y +EGAKV IADLD                             E  +A+ VSAFG +D+LVSNAGIQ +SP+++L FA+WK +LA+HLDGAFLTTRA LK MY +G GGS+IY+GSVHSKEASLLKAPYVTAKHGL+GL KVVAKEGA+H VRANVICPGFVRTPLVD+QIPEQAK LG++E  V+K IMLK+TVDGEFTT+ DVAE A+FFASF SNALTGQSLVVSHGW M+
Sbjct:    1 MRLQGKVAVVTGAASGIGKEIAERYAQEGAKVAIADLD-LNKAEMTAKAIGKNAMAVQMNVTDEAQVEAGIAKVVSAFGGVDILVSNAGIQYISPIEDLPFAEWKKLLAIHLDGAFLTTRACLKSMYKRGKGGSIIYMGSVHSKEASLLKAPYVTAKHGLLGLCKVVAKEGAKHNVRANVICPGFVRTPLVDKQIPEQAKTLGISEDDVVKKIMLKDTVDGEFTTVADVAEVALFFASFDSNALTGQSLVVSHGWFME 257          
BLAST of mRNA_P-wetherbeei_contig20306.1.1 vs. uniprot
Match: A0A5B0G241_9BURK (3-hydroxybutyrate dehydrogenase n=2 Tax=Paraburkholderia TaxID=1822464 RepID=A0A5B0G241_9BURK)

HSP 1 Score: 342 bits (876), Expect = 5.280e-116
Identity = 178/260 (68.46%), Postives = 203/260 (78.08%), Query Frame = 1
Query:    1 MRLLGKVAIISGAASGIGKEIARAYRREGAKVVIADL--DRAXXXXXXXXXXXXXXXXXXXXXXXXXXXETAMARAVSAFGRIDVLVSNAGIQIVSPLDELAFAQWKLMLAVHLDGAFLTTRAALKLMYAQGTGGSVIYVGSVHSKEASLLKAPYVTAKHGLIGLAKVVAKEGARHGVRANVICPGFVRTPLVDRQIPEQAKALGLTEQQVIKNIMLKETVDGEFTTIEDVAEAAVFFASFGSNALTGQSLVVSHGWSMQ 774
            M+L GK AII+GAASGIGKEIA  Y REGAKV IADL  D A                              MA AV+AFG +D+LVSNAGIQIV P++E   A W+ MLA+HLDGAFLTTRA L+ MY+ G GGS+IY+GSVHSKEASLLKAPYVTAKHGLIGL+KVVAKEGA+HGVRANVICPGFVRTPLVD+QIPEQAKALG++E  VIK +MLKET+DGEFTT++DVAE A+FFASF SNALTGQSL+VSHGW M+
Sbjct:    1 MKLQGKSAIITGAASGIGKEIAMTYAREGAKVAIADLNFDAANATADEIHAAGGQALGVAMDVTSEDAVNDGMAAAVAAFGGVDILVSNAGIQIVHPIEEFTHADWQKMLAIHLDGAFLTTRACLRHMYSSGRGGSIIYIGSVHSKEASLLKAPYVTAKHGLIGLSKVVAKEGAKHGVRANVICPGFVRTPLVDKQIPEQAKALGISEADVIKKVMLKETLDGEFTTLQDVAETALFFASFPSNALTGQSLIVSHGWFME 260          
BLAST of mRNA_P-wetherbeei_contig20306.1.1 vs. uniprot
Match: A4BTN1_9GAMM (3-hydroxybutyrate dehydrogenase n=2 Tax=Nitrococcus mobilis TaxID=35797 RepID=A4BTN1_9GAMM)

HSP 1 Score: 341 bits (875), Expect = 9.220e-116
Identity = 179/260 (68.85%), Postives = 204/260 (78.46%), Query Frame = 1
Query:    1 MRLLGKVAIISGAASGIGKEIARAYRREGAKVVIADLDR--AXXXXXXXXXXXXXXXXXXXXXXXXXXXETAMARAVSAFGRIDVLVSNAGIQIVSPLDELAFAQWKLMLAVHLDGAFLTTRAALKLMYAQGTGGSVIYVGSVHSKEASLLKAPYVTAKHGLIGLAKVVAKEGARHGVRANVICPGFVRTPLVDRQIPEQAKALGLTEQQVIKNIMLKETVDGEFTTIEDVAEAAVFFASFGSNALTGQSLVVSHGWSMQ 774
            MRL  KVAI++GAASGIGKEIA  + R GAKV IADLDR  A                           +    +   A G ID+LVSNAGIQIV P+++  F +WK +LA+HLDGAFLTTRAAL+ MY QG GGSVIY+GSVHSKEAS+LKAPYVTAKHGLIGLAKVVAKEGA+HGVRANVICPGFVRTPLVD+QIPEQA+ LG++E++V+KN+MLKETVDGEFTTIEDVAEAA+FFASF SNALTGQSLVVSHGW MQ
Sbjct:    7 MRLQDKVAIVTGAASGIGKEIAGCFARAGAKVAIADLDRSAAEQAAEELEAAGHQAIGVAMDVTDEAQVDAGTDKVAEALGGIDILVSNAGIQIVDPIEDFDFGKWKRLLAIHLDGAFLTTRAALRRMYRQGRGGSVIYMGSVHSKEASVLKAPYVTAKHGLIGLAKVVAKEGAQHGVRANVICPGFVRTPLVDKQIPEQAQDLGISEEEVVKNVMLKETVDGEFTTIEDVAEAALFFASFESNALTGQSLVVSHGWFMQ 266          
BLAST of mRNA_P-wetherbeei_contig20306.1.1 vs. uniprot
Match: A0A369AT09_9BURK (3-hydroxybutyrate dehydrogenase n=1 Tax=Extensimonas vulgaris TaxID=1031594 RepID=A0A369AT09_9BURK)

HSP 1 Score: 338 bits (866), Expect = 1.690e-114
Identity = 175/259 (67.57%), Postives = 205/259 (79.15%), Query Frame = 1
Query:    1 MRLLGKVAIISGAASGIGKEIARAYRREGAKVVIADLD-RAXXXXXXXXXXXXXXXXXXXXXXXXXXXETAMARAVSAFGRIDVLVSNAGIQIVSPLDELAFAQWKLMLAVHLDGAFLTTRAALKLMYAQGTGGSVIYVGSVHSKEASLLKAPYVTAKHGLIGLAKVVAKEGARHGVRANVICPGFVRTPLVDRQIPEQAKALGLTEQQVIKNIMLKETVDGEFTTIEDVAEAAVFFASFGSNALTGQSLVVSHGWSMQ 774
            MRL  KVA+++GAASGIGKEIAR +  EGAKVVIADL+ +                            +  M + V  FG+ID+LVSNAGIQ ++ +DEL  A+WK MLA+HLDGAFLTTRAAL+ MY QGTGGS+IY+GSVHSKEAS+LKAPYVTAKHGLIGLAKVVAKEGA+HGVRANVICPGFVRTPLVD+QIPEQAK  G++E+ VIK IMLK+TVDGEFTT +DVA+AA+FFA+F +NALTGQSLVVSHGW MQ
Sbjct:    1 MRLKDKVALVTGAASGIGKEIARTFVAEGAKVVIADLNAQGAQATAAELGGPAKALGVAMDVTDEAAVDAGMEQTVQTFGKIDILVSNAGIQTIAAVDELELAKWKQMLAIHLDGAFLTTRAALRHMYRQGTGGSIIYMGSVHSKEASMLKAPYVTAKHGLIGLAKVVAKEGAKHGVRANVICPGFVRTPLVDKQIPEQAKEFGISEEDVIKKIMLKDTVDGEFTTTQDVAQAALFFAAFETNALTGQSLVVSHGWFMQ 259          
BLAST of mRNA_P-wetherbeei_contig20306.1.1 vs. uniprot
Match: A0A534BXQ0_9GAMM (3-hydroxybutyrate dehydrogenase n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534BXQ0_9GAMM)

HSP 1 Score: 337 bits (864), Expect = 3.410e-114
Identity = 176/260 (67.69%), Postives = 207/260 (79.62%), Query Frame = 1
Query:    1 MRLLGKVAIISGAASGIGKEIARAYRREGAKVVIADLDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXET--AMARAVSAFGRIDVLVSNAGIQIVSPLDELAFAQWKLMLAVHLDGAFLTTRAALKLMYAQGTGGSVIYVGSVHSKEASLLKAPYVTAKHGLIGLAKVVAKEGARHGVRANVICPGFVRTPLVDRQIPEQAKALGLTEQQVIKNIMLKETVDGEFTTIEDVAEAAVFFASFGSNALTGQSLVVSHGWSMQ 774
            MRL  KVA+++GAASGIGKEIAR++   GAKVVIADL+ A                           +    +A AV  FGR+D+LVSNAGIQIV+PL++L FA WK +LA+HLDGAFLTTRAAL+ MY QG GGS+IY+GSVHSKEAS+LKAPYVTAKHGLIGLAKVVAKEGA+HGVRANVICPGFVRTPLVD+QIPEQA  LG++E+ V+K +MLKETVDGEFTT++DVA AA+FFA+F SNALTGQSL+VSHGW MQ
Sbjct:    1 MRLKDKVAVVTGAASGIGKEIARSFAEAGAKVVIADLNLAGAQSAAAEPDSSKRRAIGVVMDVTSESQVDAGIATAVGVFGRLDILVSNAGIQIVAPLEDLPFAAWKQLLAIHLDGAFLTTRAALRHMYRQG-GGSIIYMGSVHSKEASVLKAPYVTAKHGLIGLAKVVAKEGAKHGVRANVICPGFVRTPLVDKQIPEQAHKLGISEEAVVKEVMLKETVDGEFTTVQDVAAAALFFAAFDSNALTGQSLIVSHGWFMQ 259          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20306.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q7BCD3_9PROT3.990e-12070.663-hydroxybutyrate dehydrogenase n=4 Tax=unclassifi... [more]
A0A1H5PPH1_9HYPH5.860e-12070.383-hydroxybutyrate dehydrogenase n=1 Tax=Rhizobiale... [more]
A0A5J6MG39_9PROT1.950e-11870.003-hydroxybutyrate dehydrogenase n=1 Tax=Hypericiba... [more]
D3NRC7_AZOS15.370e-11870.003-hydroxybutyrate dehydrogenase n=18 Tax=Azospiril... [more]
UPI001BCB2A812.180e-11769.113-hydroxybutyrate dehydrogenase n=1 Tax=Roseococcu... [more]
A0A1G0H8B5_9GAMM2.360e-11667.833-hydroxybutyrate dehydrogenase n=1 Tax=Gammaprote... [more]
A0A5B0G241_9BURK5.280e-11668.463-hydroxybutyrate dehydrogenase n=2 Tax=Paraburkho... [more]
A4BTN1_9GAMM9.220e-11668.853-hydroxybutyrate dehydrogenase n=2 Tax=Nitrococcu... [more]
A0A369AT09_9BURK1.690e-11467.573-hydroxybutyrate dehydrogenase n=1 Tax=Extensimon... [more]
A0A534BXQ0_9GAMM3.410e-11467.693-hydroxybutyrate dehydrogenase n=2 Tax=Gammaprote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20306contigP-wetherbeei_contig20306:261..1037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog314278.NB231_00340
PFAMsadh_short,adh_short_C2
Model size777
Max annot lvl135613|Chromatiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.51e-116
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1MU5Y@1224|Proteobacteria,1RP7D@1236|Gammaproteobacteria,1X0U5@135613|Chromatiales
DescriptionBelongs to the short-chain dehydrogenases reductases (SDR) family
Cds size777
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.3023856-CDS-P-wetherbeei_contig20306:260..10371683186196.3023856-CDS-P-wetherbeei_contig20306:260..1037Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20306 261..1037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20306.1.1prot_P-wetherbeei_contig20306.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20306 261..1037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20306.1.1

>prot_P-wetherbeei_contig20306.1.1 ID=prot_P-wetherbeei_contig20306.1.1|Name=mRNA_P-wetherbeei_contig20306.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=259bp
MRLLGKVAIISGAASGIGKEIARAYRREGAKVVIADLDRAGAEATAAELD
SKDAIGVAMDVTNETAVETAMARAVSAFGRIDVLVSNAGIQIVSPLDELA
FAQWKLMLAVHLDGAFLTTRAALKLMYAQGTGGSVIYVGSVHSKEASLLK
APYVTAKHGLIGLAKVVAKEGARHGVRANVICPGFVRTPLVDRQIPEQAK
ALGLTEQQVIKNIMLKETVDGEFTTIEDVAEAAVFFASFGSNALTGQSLV
VSHGWSMQ*
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mRNA from alignment at P-wetherbeei_contig20306:261..1037-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20306.1.1 ID=mRNA_P-wetherbeei_contig20306.1.1|Name=mRNA_P-wetherbeei_contig20306.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig20306:261..1037- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTCTCCTAGGTAAAGTCGCGATCATTTCCGGCGCCGCGAGTGGCAT CGGCAAGGAAATCGCGCGCGCCTACCGGCGTGAAGGAGCCAAGGTCGTGA TCGCCGATCTAGATCGGGCTGGTGCCGAAGCAACCGCCGCAGAGCTTGAC AGCAAGGATGCGATCGGCGTCGCGATGGACGTGACGAACGAGACAGCGGT CGAGACCGCCATGGCCAGGGCAGTCTCGGCGTTCGGGCGCATCGATGTGC TCGTGAGCAATGCCGGCATTCAGATCGTGTCACCGCTGGATGAGCTCGCG TTCGCGCAATGGAAGCTGATGCTGGCCGTCCATCTCGACGGCGCCTTCCT CACCACGCGGGCGGCGTTGAAGCTCATGTATGCGCAGGGCACCGGCGGCA GTGTGATCTACGTGGGCTCGGTACACTCGAAGGAGGCCTCGTTGCTGAAG GCGCCCTACGTGACAGCCAAGCACGGGCTCATCGGGCTTGCCAAAGTCGT CGCCAAGGAGGGCGCCAGGCACGGCGTACGGGCGAACGTCATCTGTCCGG GCTTCGTCAGAACGCCGCTGGTCGATCGGCAGATTCCGGAGCAGGCCAAG GCACTCGGTCTCACTGAGCAGCAGGTCATCAAGAACATCATGCTCAAGGA AACGGTCGACGGCGAGTTCACGACGATCGAGGACGTCGCCGAGGCCGCCG TCTTCTTCGCGAGCTTCGGCTCGAACGCCTTGACCGGACAGTCTCTGGTT GTGAGCCACGGCTGGTCGATGCAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20306:261..1037-

>mRNA_P-wetherbeei_contig20306.1.1 ID=mRNA_P-wetherbeei_contig20306.1.1|Name=mRNA_P-wetherbeei_contig20306.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig20306:261..1037- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTCTCCTAGGTAAAGTCGCGATCATTTCCGGCGCCGCGAGTGGCAT
CGGCAAGGAAATCGCGCGCGCCTACCGGCGTGAAGGAGCCAAGGTCGTGA
TCGCCGATCTAGATCGGGCTGGTGCCGAAGCAACCGCCGCAGAGCTTGAC
AGCAAGGATGCGATCGGCGTCGCGATGGACGTGACGAACGAGACAGCGGT
CGAGACCGCCATGGCCAGGGCAGTCTCGGCGTTCGGGCGCATCGATGTGC
TCGTGAGCAATGCCGGCATTCAGATCGTGTCACCGCTGGATGAGCTCGCG
TTCGCGCAATGGAAGCTGATGCTGGCCGTCCATCTCGACGGCGCCTTCCT
CACCACGCGGGCGGCGTTGAAGCTCATGTATGCGCAGGGCACCGGCGGCA
GTGTGATCTACGTGGGCTCGGTACACTCGAAGGAGGCCTCGTTGCTGAAG
GCGCCCTACGTGACAGCCAAGCACGGGCTCATCGGGCTTGCCAAAGTCGT
CGCCAAGGAGGGCGCCAGGCACGGCGTACGGGCGAACGTCATCTGTCCGG
GCTTCGTCAGAACGCCGCTGGTCGATCGGCAGATTCCGGAGCAGGCCAAG
GCACTCGGTCTCACTGAGCAGCAGGTCATCAAGAACATCATGCTCAAGGA
AACGGTCGACGGCGAGTTCACGACGATCGAGGACGTCGCCGAGGCCGCCG
TCTTCTTCGCGAGCTTCGGCTCGAACGCCTTGACCGGACAGTCTCTGGTT
GTGAGCCACGGCTGGTCGATGCAGTGA
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