mRNA_P-wetherbeei_contig2028.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2028.5.1
Unique NamemRNA_P-wetherbeei_contig2028.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2028.5.1 vs. uniprot
Match: A0A059LFL6_9CHLO (Transcription initiation factor IIA subunit 2 n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LFL6_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 1.040e-5
Identity = 30/82 (36.59%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:  220 IYESLPLGDTFIEALNSMVEDYGLPPEQAEELLAAYNDVIATKYNQLDKKRKDLKASMQGKIRSFNRLDDTWRLDLKDVEIK 465
            +Y    +GD+ +EAL+S+V +  +PPE A  +L  ++  IA     LD  R   KASM+G++ ++  LD+ W   L +V IK
Sbjct:    5 LYRKTTIGDSLVEALDSLVSEGKIPPELAYRVLHEFDRSIA---KSLDT-RVTAKASMKGQLATYRYLDNVWNFVLSNVSIK 82
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2028.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A059LFL6_9CHLO1.040e-536.59Transcription initiation factor IIA subunit 2 n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2028contigP-wetherbeei_contig2028:5191..6238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4952.CAG78549
Preferred nametoa2
PFAMsTFIIA_gamma_C,TFIIA_gamma_N
Model size714
Max annot lvl4751|Fungi
KEGG koko:K03123
KEGG Pathwayko03022,ko05203,map03022,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0000988,GO:0000990,GO:0000991,GO:0003674,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005672,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016591,GO:0017025,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051123,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2001141
Exons3
Evalue0.000127
EggNOG OGsCOG5123@1|root,KOG3463@2759|Eukaryota,3A3NT@33154|Opisthokonta,3P3X2@4751|Fungi,3QW73@4890|Ascomycota,3RV27@4891|Saccharomycetes
DescriptionTFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation
Cds size543
COG categoryK
BRITEko00000,ko00001,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.5150397-UTR-P-wetherbeei_contig2028:5190..53611683186195.5150397-UTR-P-wetherbeei_contig2028:5190..5361Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2028 5191..5361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.5267649-CDS-P-wetherbeei_contig2028:5361..55231683186195.5267649-CDS-P-wetherbeei_contig2028:5361..5523Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2028 5362..5523 +
1683186195.5357933-CDS-P-wetherbeei_contig2028:5698..57611683186195.5357933-CDS-P-wetherbeei_contig2028:5698..5761Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2028 5699..5761 +
1683186195.545392-CDS-P-wetherbeei_contig2028:5920..62381683186195.545392-CDS-P-wetherbeei_contig2028:5920..6238Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2028 5921..6238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2028.5.1prot_P-wetherbeei_contig2028.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2028 5362..6238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2028.5.1

>prot_P-wetherbeei_contig2028.5.1 ID=prot_P-wetherbeei_contig2028.5.1|Name=mRNA_P-wetherbeei_contig2028.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
MSGSEPASSESPPGRPIYESLPLGDTFIEALNSMVEDYGLPPEQAEELLA
AYNDVIATKYNQLDKKRKDLKASMQGKIRSFNRLDDTWRLDLKDVEIKYA
SGAVIKTDCISVYAEREKPALVTSRTSGVAAVAAAATTIGTGAGATACRR
APKQPVAAAMASAGRRGSGGGGSGDGSGGGS
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mRNA from alignment at P-wetherbeei_contig2028:5191..6238+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2028.5.1 ID=mRNA_P-wetherbeei_contig2028.5.1|Name=mRNA_P-wetherbeei_contig2028.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1048bp|location=Sequence derived from alignment at P-wetherbeei_contig2028:5191..6238+ (Phaeothamnion wetherbeei SAG_119_79)
TGGCATTTCAACGGTGTGGGGTAACTAGACGATCCAAAGAGATCTCACGA
GAGAGAAAGGGAAACGAAGAGGGGCAGAAAGGAGGAGTATCGGCAGAGTT
GCAAGCTTTAAAAAGATATTCTGTTTGTCGGATTACAGGAAAAAGATCCT
TGTTCCTTCCCGCAACAGCAAATGAGCGGCTCAGAGCCAGCATCGTCGGA
GTCGCCGCCAGGACGACCGATCTATGAGTCTCTTCCGCTGGGGGACACTT
TCATCGAGGCGCTCAACAGCATGGTGGAAGACTACGGACTGCCTCCAGAG
CAGGCGGAGGAGCTCCTCGCGGCGTACAATGATGTACGTTTCTCCGCTTT
TCACCCTTGATTCATGCAACGGCATTGCCAGTCTCGAGTTTTTTGAAGAC
ACTCATGTATTCCACGCCGCTTGTGATTCCGCTCACGGTTTCATATTTCA
CAAGCTCTTCCGCAACACAACTCGCCTGAACGCTCTCGTTTCGTGGTGGC
TTTCGCAGGTCATCGCCACAAAGTACAACCAGCTGGACAAGAAACGCAAG
GACCTGAAAGCGAGCATGCAGGCGAGGAAAGGGGTGAACGGGCCGAAAGA
CAGCGATATAATCCTGCGGTTGCGCTTTAAACCCTCTCTCCTGCGCCATT
CTTCCTTTTTATCGTTTCAGCAAACATTTCGTTCCTGTTCTCCTTCGTCC
TGACATAACACTCACGTGGGCGGCCCTCAGGGGAAGATCCGCAGCTTTAA
CAGGCTGGACGACACCTGGCGGCTGGACCTTAAAGACGTGGAGATCAAGT
ACGCCAGCGGTGCCGTCATAAAAACCGATTGCATCTCAGTGTACGCGGAG
CGGGAGAAACCGGCCCTTGTGACGAGTAGGACGTCGGGCGTCGCCGCCGT
CGCCGCCGCTGCCACGACGATTGGGACGGGCGCGGGTGCGACTGCATGCC
GACGGGCGCCGAAGCAGCCGGTGGCCGCTGCCATGGCATCAGCCGGCCGC
AGAGGCAGCGGCGGCGGCGGCAGCGGCGACGGCAGCGGCGGCGGCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2028:5191..6238+

>mRNA_P-wetherbeei_contig2028.5.1 ID=mRNA_P-wetherbeei_contig2028.5.1|Name=mRNA_P-wetherbeei_contig2028.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig2028:5191..6238+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGGCTCAGAGCCAGCATCGTCGGAGTCGCCGCCAGGACGACCGAT
CTATGAGTCTCTTCCGCTGGGGGACACTTTCATCGAGGCGCTCAACAGCA
TGGTGGAAGACTACGGACTGCCTCCAGAGCAGGCGGAGGAGCTCCTCGCG
GCGTACAATGATGTCATCGCCACAAAGTACAACCAGCTGGACAAGAAACG
CAAGGACCTGAAAGCGAGCATGCAGGGGAAGATCCGCAGCTTTAACAGGC
TGGACGACACCTGGCGGCTGGACCTTAAAGACGTGGAGATCAAGTACGCC
AGCGGTGCCGTCATAAAAACCGATTGCATCTCAGTGTACGCGGAGCGGGA
GAAACCGGCCCTTGTGACGAGTAGGACGTCGGGCGTCGCCGCCGTCGCCG
CCGCTGCCACGACGATTGGGACGGGCGCGGGTGCGACTGCATGCCGACGG
GCGCCGAAGCAGCCGGTGGCCGCTGCCATGGCATCAGCCGGCCGCAGAGG
CAGCGGCGGCGGCGGCAGCGGCGACGGCAGCGGCGGCGGCAGC
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