mRNA_P-wetherbeei_contig20279.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20279.2.1
Unique NamemRNA_P-wetherbeei_contig20279.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Match: A0A7X9KJK0_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9KJK0_9ACTN)

HSP 1 Score: 119 bits (297), Expect = 2.160e-32
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 1
Query:    1 EVERQQVWSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGEEAD 198
            +VERQQVWSEVG LPARQ AVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLG EAD
Sbjct:  121 DVERQQVWSEVGCLPARQCAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGGEAD 186          
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Match: A0A2W5XQW0_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W5XQW0_9CHLR)

HSP 1 Score: 73.9 bits (180), Expect = 1.450e-14
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1
Query:   22 WSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGEE 192
            WSEV RLPARQR VL+LR+R DLAF+ IG  LGI  ++ARS+  + +A LR RLGEE
Sbjct:  157 WSEVDRLPARQRQVLYLRYRTDLAFEAIGEVLGIDPASARSNAARGIARLRERLGEE 213          
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Match: A0A2W5XJ19_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W5XJ19_9CHLR)

HSP 1 Score: 68.6 bits (166), Expect = 1.110e-12
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 EVERQQVWSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGE 189
            E +R  VW  V RLP RQR VL+LR++ADL F++IG  LGI A +ARSH ++ L  LR RL E
Sbjct:  122 ETDRIAVWDAVDRLPHRQRTVLYLRYQADLPFEQIGNVLGIAAVSARSHASRGLDALRRRLRE 184          
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Match: A0A535XRA9_9CHLR (RNA polymerase sigma factor n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535XRA9_9CHLR)

HSP 1 Score: 68.2 bits (165), Expect = 1.870e-12
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   19 VWSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGEEAD 198
            VW  V RLPARQR  ++LR+RADL F+EIG  LGI A +ARSH ++AL TLR     E +
Sbjct:  139 VWDAVERLPARQRLAVYLRYRADLPFEEIGAILGIQAVSARSHVSRALETLRESFAGERE 198          
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Match: A0A535A5K1_9CHLR (Sigma-70 family RNA polymerase sigma factor (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535A5K1_9CHLR)

HSP 1 Score: 66.6 bits (161), Expect = 1.040e-11
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    7 ERQQVWSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGEE 192
            +R  +W  V  LP RQR  ++LR+RADL ++EIG  LGI  ++ARSH ++AL  LR  LGEE
Sbjct:  162 DRMAIWEAVEGLPERQRLAIYLRYRADLPYEEIGAILGIVPASARSHVSRALDALRAELGEE 223          
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Match: UPI001F0E7BDB (SigE family RNA polymerase sigma factor n=1 Tax=Planosporangium thailandense TaxID=765197 RepID=UPI001F0E7BDB)

HSP 1 Score: 64.7 bits (156), Expect = 1.920e-11
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    4 VERQQVWSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGEE 192
            +ER  +W+ V  LPARQRAVL LRF  DL+  +    LG++    +S C++ALATLR RLGE+
Sbjct:   80 LERDALWAHVKELPARQRAVLVLRFYEDLSEVDTAALLGVSVGTVKSQCSRALATLRRRLGEQ 142          
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Match: A0A521RZW0_9CHLR (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A521RZW0_9CHLR)

HSP 1 Score: 65.1 bits (157), Expect = 2.040e-11
Identity = 29/61 (47.54%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    7 ERQQVWSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGE 189
            +R  +W  V RLPAR+RA L+LR+RADL+F++IG  +GIT ++AR++ ++ +  LR+ +GE
Sbjct:  115 DRLSLWPLVDRLPARERATLYLRYRADLSFEQIGEVMGITTASARTYASRGVERLRSTVGE 175          
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Match: A0A7W7I3E7_9ACTN (RNA polymerase sigma-70 factor (Sigma-E family) n=2 Tax=Actinoplanes digitatis TaxID=1868 RepID=A0A7W7I3E7_9ACTN)

HSP 1 Score: 64.3 bits (155), Expect = 3.640e-11
Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    4 VERQQVWSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGEEAD 198
            +E+  +WS +  LPA+QRAVL LR+   LA  EI   LGI+    +SH ++ LATLR RLGEE D
Sbjct:  104 IEQDAMWSHLRALPAKQRAVLVLRYYEGLAEAEIAEVLGISRGTVKSHASRGLATLRQRLGEERD 168          
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Match: A0A7W1R3C5_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Geodermatophilaceae bacterium TaxID=1882271 RepID=A0A7W1R3C5_9ACTN)

HSP 1 Score: 64.7 bits (156), Expect = 3.660e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 1
Query:   19 VWSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGE 189
            VW++V RLP RQR VL+LR+RADL FD+I   LGIT  AAR+  ++AL  +R  L +
Sbjct:  136 VWAQVDRLPTRQRHVLYLRYRADLCFDDIAAVLGITPGAARTLASRALERVRRELAD 192          
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Match: A0A534ZRX0_9CHLR (Sigma-70 family RNA polymerase sigma factor n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A534ZRX0_9CHLR)

HSP 1 Score: 63.5 bits (153), Expect = 8.110e-11
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   19 VWSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGEEAD 198
            VWS V RLP RQR  ++LR+RADL F+EI   LGI   +ARSH ++AL TLR    +E +
Sbjct:  120 VWSAVERLPERQRLAIYLRYRADLPFEEIAAILGIQPVSARSHVSRALDTLRASFEDERE 179          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9KJK0_9ACTN2.160e-3293.94Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A2W5XQW0_9CHLR1.450e-1463.16Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A2W5XJ19_9CHLR1.110e-1255.56Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A535XRA9_9CHLR1.870e-1256.67RNA polymerase sigma factor n=1 Tax=Chloroflexi ba... [more]
A0A535A5K1_9CHLR1.040e-1151.61Sigma-70 family RNA polymerase sigma factor (Fragm... [more]
UPI001F0E7BDB1.920e-1150.79SigE family RNA polymerase sigma factor n=1 Tax=Pl... [more]
A0A521RZW0_9CHLR2.040e-1147.54Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A7W7I3E7_9ACTN3.640e-1150.77RNA polymerase sigma-70 factor (Sigma-E family) n=... [more]
A0A7W1R3C5_9ACTN3.660e-1154.39Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A534ZRX0_9CHLR8.110e-1153.33Sigma-70 family RNA polymerase sigma factor n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20279contigP-wetherbeei_contig20279:961..1161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog28042.GU90_10640
PFAMsSigma70_r2,Sigma70_r4,Sigma70_r4_2
Model size201
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.5e-09
EggNOG OGsCOG1595@1|root,COG1595@2|Bacteria,2GP81@201174|Actinobacteria,4E31R@85010|Pseudonocardiales
DescriptionBelongs to the sigma-70 factor family. ECF subfamily
Cds size201
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.4829717-CDS-P-wetherbeei_contig20279:960..11611683186195.4829717-CDS-P-wetherbeei_contig20279:960..1161Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20279 961..1161 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20279.2.1prot_P-wetherbeei_contig20279.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20279 961..1161 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20279.2.1

>prot_P-wetherbeei_contig20279.2.1 ID=prot_P-wetherbeei_contig20279.2.1|Name=mRNA_P-wetherbeei_contig20279.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp
EVERQQVWSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHC
TQALATLRNRLGEEAD*
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mRNA from alignment at P-wetherbeei_contig20279:961..1161-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20279.2.1 ID=mRNA_P-wetherbeei_contig20279.2.1|Name=mRNA_P-wetherbeei_contig20279.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig20279:961..1161- (Phaeothamnion wetherbeei SAG_119_79)
GAGGTCGAGCGTCAACAGGTTTGGTCCGAAGTTGGCCGCCTGCCAGCTCG CCAGCGCGCCGTACTGTTTCTGCGTTTTCGCGCCGATCTCGCGTTCGACG AAATCGGCATGACGTTGGGTATCACCGCCAGCGCTGCACGGAGCCATTGC ACGCAGGCGCTCGCGACGTTGCGAAACCGCCTCGGTGAGGAGGCCGACTG A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20279:961..1161-

>mRNA_P-wetherbeei_contig20279.2.1 ID=mRNA_P-wetherbeei_contig20279.2.1|Name=mRNA_P-wetherbeei_contig20279.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig20279:961..1161- (Phaeothamnion wetherbeei SAG_119_79)
GAGGTCGAGCGTCAACAGGTTTGGTCCGAAGTTGGCCGCCTGCCAGCTCG
CCAGCGCGCCGTACTGTTTCTGCGTTTTCGCGCCGATCTCGCGTTCGACG
AAATCGGCATGACGTTGGGTATCACCGCCAGCGCTGCACGGAGCCATTGC
ACGCAGGCGCTCGCGACGTTGCGAAACCGCCTCGGTGAGGAGGCCGACTG
A
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