mRNA_P-wetherbeei_contig20279.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Match: A0A7X9KJK0_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9KJK0_9ACTN) HSP 1 Score: 119 bits (297), Expect = 2.160e-32 Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 1
Query: 1 EVERQQVWSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGEEAD 198
+VERQQVWSEVG LPARQ AVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLG EAD
Sbjct: 121 DVERQQVWSEVGCLPARQCAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGGEAD 186
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Match: A0A2W5XQW0_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W5XQW0_9CHLR) HSP 1 Score: 73.9 bits (180), Expect = 1.450e-14 Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1
Query: 22 WSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGEE 192
WSEV RLPARQR VL+LR+R DLAF+ IG LGI ++ARS+ + +A LR RLGEE
Sbjct: 157 WSEVDRLPARQRQVLYLRYRTDLAFEAIGEVLGIDPASARSNAARGIARLRERLGEE 213
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Match: A0A2W5XJ19_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W5XJ19_9CHLR) HSP 1 Score: 68.6 bits (166), Expect = 1.110e-12 Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 1
Query: 1 EVERQQVWSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGE 189
E +R VW V RLP RQR VL+LR++ADL F++IG LGI A +ARSH ++ L LR RL E
Sbjct: 122 ETDRIAVWDAVDRLPHRQRTVLYLRYQADLPFEQIGNVLGIAAVSARSHASRGLDALRRRLRE 184
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Match: A0A535XRA9_9CHLR (RNA polymerase sigma factor n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535XRA9_9CHLR) HSP 1 Score: 68.2 bits (165), Expect = 1.870e-12 Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query: 19 VWSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGEEAD 198
VW V RLPARQR ++LR+RADL F+EIG LGI A +ARSH ++AL TLR E +
Sbjct: 139 VWDAVERLPARQRLAVYLRYRADLPFEEIGAILGIQAVSARSHVSRALETLRESFAGERE 198
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Match: A0A535A5K1_9CHLR (Sigma-70 family RNA polymerase sigma factor (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535A5K1_9CHLR) HSP 1 Score: 66.6 bits (161), Expect = 1.040e-11 Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1
Query: 7 ERQQVWSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGEE 192
+R +W V LP RQR ++LR+RADL ++EIG LGI ++ARSH ++AL LR LGEE
Sbjct: 162 DRMAIWEAVEGLPERQRLAIYLRYRADLPYEEIGAILGIVPASARSHVSRALDALRAELGEE 223
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Match: UPI001F0E7BDB (SigE family RNA polymerase sigma factor n=1 Tax=Planosporangium thailandense TaxID=765197 RepID=UPI001F0E7BDB) HSP 1 Score: 64.7 bits (156), Expect = 1.920e-11 Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1
Query: 4 VERQQVWSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGEE 192
+ER +W+ V LPARQRAVL LRF DL+ + LG++ +S C++ALATLR RLGE+
Sbjct: 80 LERDALWAHVKELPARQRAVLVLRFYEDLSEVDTAALLGVSVGTVKSQCSRALATLRRRLGEQ 142
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Match: A0A521RZW0_9CHLR (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A521RZW0_9CHLR) HSP 1 Score: 65.1 bits (157), Expect = 2.040e-11 Identity = 29/61 (47.54%), Postives = 47/61 (77.05%), Query Frame = 1
Query: 7 ERQQVWSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGE 189
+R +W V RLPAR+RA L+LR+RADL+F++IG +GIT ++AR++ ++ + LR+ +GE
Sbjct: 115 DRLSLWPLVDRLPARERATLYLRYRADLSFEQIGEVMGITTASARTYASRGVERLRSTVGE 175
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Match: A0A7W7I3E7_9ACTN (RNA polymerase sigma-70 factor (Sigma-E family) n=2 Tax=Actinoplanes digitatis TaxID=1868 RepID=A0A7W7I3E7_9ACTN) HSP 1 Score: 64.3 bits (155), Expect = 3.640e-11 Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 4 VERQQVWSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGEEAD 198
+E+ +WS + LPA+QRAVL LR+ LA EI LGI+ +SH ++ LATLR RLGEE D
Sbjct: 104 IEQDAMWSHLRALPAKQRAVLVLRYYEGLAEAEIAEVLGISRGTVKSHASRGLATLRQRLGEERD 168
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Match: A0A7W1R3C5_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Geodermatophilaceae bacterium TaxID=1882271 RepID=A0A7W1R3C5_9ACTN) HSP 1 Score: 64.7 bits (156), Expect = 3.660e-11 Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 1
Query: 19 VWSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGE 189
VW++V RLP RQR VL+LR+RADL FD+I LGIT AAR+ ++AL +R L +
Sbjct: 136 VWAQVDRLPTRQRHVLYLRYRADLCFDDIAAVLGITPGAARTLASRALERVRRELAD 192
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Match: A0A534ZRX0_9CHLR (Sigma-70 family RNA polymerase sigma factor n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A534ZRX0_9CHLR) HSP 1 Score: 63.5 bits (153), Expect = 8.110e-11 Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query: 19 VWSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCTQALATLRNRLGEEAD 198
VWS V RLP RQR ++LR+RADL F+EI LGI +ARSH ++AL TLR +E +
Sbjct: 120 VWSAVERLPERQRLAIYLRYRADLPFEEIAAILGIQPVSARSHVSRALDTLRASFEDERE 179 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20279.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig20279.2.1 >prot_P-wetherbeei_contig20279.2.1 ID=prot_P-wetherbeei_contig20279.2.1|Name=mRNA_P-wetherbeei_contig20279.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp EVERQQVWSEVGRLPARQRAVLFLRFRADLAFDEIGMTLGITASAARSHCback to top mRNA from alignment at P-wetherbeei_contig20279:961..1161- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig20279.2.1 ID=mRNA_P-wetherbeei_contig20279.2.1|Name=mRNA_P-wetherbeei_contig20279.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig20279:961..1161- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig20279:961..1161- >mRNA_P-wetherbeei_contig20279.2.1 ID=mRNA_P-wetherbeei_contig20279.2.1|Name=mRNA_P-wetherbeei_contig20279.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig20279:961..1161- (Phaeothamnion wetherbeei SAG_119_79)back to top |