mRNA_P-wetherbeei_contig2027.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2027.6.1
Unique NamemRNA_P-wetherbeei_contig2027.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2027.6.1 vs. uniprot
Match: A0A7S2SRU5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRU5_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.310e-9
Identity = 75/226 (33.19%), Postives = 105/226 (46.46%), Query Frame = 1 
Query:   79 TAALRNMCKCGILSMFMLGLLPTYVGMLADCATAETFGSTPLKRLRAFGDADGAGLVTRYLAG--AAFYLVLQEVAMELRKMLRPQLRQLRRLLP--------RPRPALDMPALVAAVEAQPLLPQLLRMAALVT-IVLPVCAVLLLLVPLRVGC---LVPHWGPLRVRHEDSFEELQLPLQLLLFHVVLPTVIERCNAQAVVRRALRAWFLNVSQQLGLRAFLFR 714
            +AAL    K G++    L + P  +G L   +TA   G++  +RL  F       L   +L G  A ++ V   VA+ELR  L P +  L   LP             L   AL   + A  L   LLR  AL T + +P+   LL  V   + C   +VP   PL +R  +   E+QLPL+L+LFHV+LP  +ER   +  +  ALR W    S+  GL A L R
Sbjct:  634 SAALALATKIGLVLALELLVFPVVLGALVSASTAAPMGTSVHERLALFTQRPDLALFLHWLLGLVATWWQVF--VALELRATLHPSI--LGNFLPDLVGEEENEAAARLANEALFKRLRASSLATLLLRDIALFTGLSVPL---LLATVWFPLNCAHRMVPGASPLVLRLSEPLMEVQLPLELILFHVLLPIAVERMQVRRPLSAALRWWLETTSRMFGLDAQLLR 852
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BLAST of mRNA_P-wetherbeei_contig2027.6.1 vs. uniprot
Match: A0A7R9TSR1_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TSR1_9VIRI)

HSP 1 Score: 58.9 bits (141), Expect = 7.350e-6
Identity = 62/236 (26.27%), Postives = 99/236 (41.95%), Query Frame = 1 
Query:   94 NMCKCGILSMFMLGLLPTYVGMLADCATAETFGSTPLKRLRAFGDADGAGLVTRYLAGAAFYLVLQEVAMELRKMLRPQLRQLRR--LLPRPRPALDMPALVAAVEAQPLLPQLLRMAALVTIVLPVCAVLLLLVPLRVG-CLVPHWGPLRVRHEDSFEELQLPLQLLLFHVVLPTVIERCNAQAVVRRALRAWFLNVSQQLGLRAFLFRPDLP------------GGVENPAIRA 756
             + K  +L +  LGL P   G   D  T    G+T  +R   +  +        +L G AF L +      LR++LRP +    R    P   P  D+         +  + + LR   +   +     VLL+ +P+++   L P   P+++R  D F E+  P+ +LLFH+V+P   E    +  +RR    W    +   G+ A L  PD+P            GGV+ P  RA
Sbjct:  325 TLLKVTVLLVMELGLFPLMCGWWVDFCTLPLLGATLAERFEFWSSSPVTSTNVHWLVGIAFMLNMSIFVALLREVLRPGVLSFLRDPADPNYNPFRDL--------VEDSVSKHLRRVVVSKAIYGTLTVLLVYIPIQLALALAPSLFPVQLRFTDPFAEV--PVDMLLFHLVVPFTAEHVRPRRALRRLFSEWVTWAATAFGVDAQLL-PDVPVHVGGDPNGEDGGGVDVPLERA 549
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2027.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2SRU5_9STRA3.310e-933.19Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9TSR1_9VIRI7.350e-626.27Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2027contigP-wetherbeei_contig2027:4376..6254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7370.XP_005179067.1
Preferred nameMARCH6
PFAMsRINGv
Model size1009
Max annot lvl33208|Metazoa
KEGG koko:K10661
KEGG Pathwayko04141,map04141
Hectar predicted targeting categorysignal peptide
GOsGO:0000151,GO:0000153,GO:0000209,GO:0000835,GO:0002020,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006508,GO:0006511,GO:0006517,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009100,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0016020,GO:0016021,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0030176,GO:0030433,GO:0031224,GO:0031227,GO:0031624,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034976,GO:0035264,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0040007,GO:0042175,GO:0042221,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044390,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0048589,GO:0050896,GO:0051603,GO:0051716,GO:0061630,GO:0061659,GO:0070647,GO:0070936,GO:0071704,GO:0098796,GO:0098827,GO:0140096,GO:1901135,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1902494,GO:1904380,GO:1990234,GO:1990381
Exons3
Evalue9.47e-09
EggNOG OGsCOG5183@1|root,KOG1609@2759|Eukaryota,38GYJ@33154|Opisthokonta,3BCF4@33208|Metazoa,3CWNX@33213|Bilateria,41VBR@6656|Arthropoda,3SKRY@50557|Insecta,45238@7147|Diptera
EC2.3.2.27
DescriptionZinc ion binding
Cds size1008
COG categoryA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.25224-CDS-P-wetherbeei_contig2027:4376..47861683186195.25224-CDS-P-wetherbeei_contig2027:4376..4786Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2027 4377..4786 -
1683186195.2672062-CDS-P-wetherbeei_contig2027:5204..56241683186195.2672062-CDS-P-wetherbeei_contig2027:5204..5624Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2027 5205..5624 -
1683186195.2765613-CDS-P-wetherbeei_contig2027:6076..62541683186195.2765613-CDS-P-wetherbeei_contig2027:6076..6254Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2027 6077..6254 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2027.6.1prot_P-wetherbeei_contig2027.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2027 4377..6254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2027.6.1

>prot_P-wetherbeei_contig2027.6.1 ID=prot_P-wetherbeei_contig2027.6.1|Name=mRNA_P-wetherbeei_contig2027.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=336bp
GAAGAAGAAAAAGAVAVPMRERVRELTAALRNMCKCGILSMFMLGLLPTY
VGMLADCATAETFGSTPLKRLRAFGDADGAGLVTRYLAGAAFYLVLQEVA
MELRKMLRPQLRQLRRLLPRPRPALDMPALVAAVEAQPLLPQLLRMAALV
TIVLPVCAVLLLLVPLRVGCLVPHWGPLRVRHEDSFEELQLPLQLLLFHV
VLPTVIERCNAQAVVRRALRAWFLNVSQQLGLRAFLFRPDLPGGVENPAI
RAVVAAGVVRLVQEGVGAIHGVNAAIREAQDAALAAAALRNPAALAGANP
LPPQQQQQPPPAAFLIRVGAGGGQPAAVAAAAADPA
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mRNA from alignment at P-wetherbeei_contig2027:4376..6254-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2027.6.1 ID=mRNA_P-wetherbeei_contig2027.6.1|Name=mRNA_P-wetherbeei_contig2027.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1879bp|location=Sequence derived from alignment at P-wetherbeei_contig2027:4376..6254- (Phaeothamnion wetherbeei SAG_119_79)
GGTGCGGCTGGGGCCGCGGGGGCTGCCGCCGCGGCAGGGGCGGTGGCGGT
GCCGATGCGGGAGCGGGTGCGAGAGCTGACGGCGGCGCTGCGCAACATGT
GCAAGTGCGGCATTCTTTCGATGTTCATGCTCGGGCTGCTGCCGACCTAT
GTGGGCATGTTGGCCGACTGCGCCACAGGTGCCTTGGTGCTTCCTTTCTT
TGTTCGTTGGCGTGTTTGTCGGTTTGTTTGCTTGCTGGTGTGGTTCGTCT
ATTCGTCGTCAAGTCGTTTGTTTGTTCGTTCATTGAACATACCTTTATTC
AGTTTGCCGGGCGCGTTCGTTCCATGTGTTCGTTCCATGTGCTGTTGAGT
TGTCTGCCTCCTTGAGTCAGGGGTCTTGCAGATGGGCAGAGTCGCCGACG
TGGAAGAGGCCTTTTTTGGTGATTGTTGAACAGTGGTGCAATTTTGCTGT
TTGCCGGTGCGCATACGCTGTCCATTTTGCTGTTTTTCTTCCGCTGTCGT
GCTGCAAGAGAGAATTCTCACTTTTTGTGTACTGTTCCCCCCCACTCGTT
GCCGCTCCGCCACACACCCGCGCGCCGGATCTATTTCCCACGATCTTTGC
CGCGCGGCGCCGTGCCGGCCATGGCAACAGCCGAGACGTTTGGGTCGACC
CCGCTCAAGCGGCTACGCGCCTTCGGCGATGCCGACGGCGCCGGCCTCGT
CACCCGCTACCTGGCGGGCGCCGCCTTCTACCTCGTGCTGCAGGAGGTCG
CCATGGAGCTGCGCAAGATGCTGCGGCCGCAGCTGCGGCAGCTGCGGCGG
CTGCTGCCACGGCCGCGGCCGGCGCTCGACATGCCGGCACTCGTGGCGGC
GGTGGAGGCGCAGCCGCTGCTGCCGCAGTTGCTGCGGATGGCGGCACTGG
TAACGATCGTGTTGCCGGTGTGCGCGGTCCTGCTGCTGCTGGTGCCGCTG
CGGGTCGGCTGCCTGGTGCCGCACTGGGGGCCATTGCGGGTGCGCCATGA
GGACAGCTTCGAGGAGCTGCAGTTGCCTCTACAGCTCCTGCTCTTTCACG
GTGAGAGCGGCGCAAGCAGATTAGACGTGGCGAGTTGGCGAGCGTGCGGC
TGCTGATGTGGCGATCGACCTGATTTGGTTGATTCATTGGCTGGTTTGGT
TGTTGGCCCTTGGTTCTGTTTGTGGATTTGGTGGTTTGCGCTTTGATTTG
TCGAAATCAAAATCGATTTAATGACGTCGCGGCTCGGTTTTACTTATTGG
TGGGGCGGCGGCAGGCCTCATGGGCGGCTGCGTTCGAACTTGCGGGCCGG
CTTGAAATTCTAAAGTCTTCTTTTGACATCAGTCCGACATCAGTCCGACC
TGGTTACTATAGATAATGCAGTGCACAAATCAGCCCTAAGATGTCTCCTT
TCCGCTCCTTCCCCTCCCGCCCCTGTCGTTCTTTTTGCCTCTGCTCTTGC
CACCCCCCCGGTCCGCAGTGGTGCTGCCGACCGTCATCGAGCGGTGCAAC
GCCCAGGCCGTCGTCCGCCGCGCGCTGCGCGCGTGGTTTCTCAACGTCTC
GCAGCAGCTCGGGCTGCGGGCCTTCCTGTTCCGGCCGGACCTTCCCGGCG
GTGTGGAAAACCCAGCCATCCGCGCCGTGGTCGCCGCCGGGGTTGTCAGG
CTGGTCCAGGAGGGCGTTGGCGCCATCCACGGCGTCAACGCCGCGATCCG
CGAGGCGCAGGATGCCGCCCTCGCCGCCGCCGCGTTGAGGAACCCCGCAG
CACTGGCCGGTGCGAATCCGCTGCCGCCGCAGCAGCAGCAGCAGCCGCCG
CCAGCAGCTTTCCTGATTCGAGTCGGTGCCGGCGGAGGGCAACCGGCTGC
GGTAGCCGCCGCTGCGGCCGATCCCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2027:4376..6254-

>mRNA_P-wetherbeei_contig2027.6.1 ID=mRNA_P-wetherbeei_contig2027.6.1|Name=mRNA_P-wetherbeei_contig2027.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1008bp|location=Sequence derived from alignment at P-wetherbeei_contig2027:4376..6254- (Phaeothamnion wetherbeei SAG_119_79)
GGTGCGGCTGGGGCCGCGGGGGCTGCCGCCGCGGCAGGGGCGGTGGCGGT
GCCGATGCGGGAGCGGGTGCGAGAGCTGACGGCGGCGCTGCGCAACATGT
GCAAGTGCGGCATTCTTTCGATGTTCATGCTCGGGCTGCTGCCGACCTAT
GTGGGCATGTTGGCCGACTGCGCCACAGCCGAGACGTTTGGGTCGACCCC
GCTCAAGCGGCTACGCGCCTTCGGCGATGCCGACGGCGCCGGCCTCGTCA
CCCGCTACCTGGCGGGCGCCGCCTTCTACCTCGTGCTGCAGGAGGTCGCC
ATGGAGCTGCGCAAGATGCTGCGGCCGCAGCTGCGGCAGCTGCGGCGGCT
GCTGCCACGGCCGCGGCCGGCGCTCGACATGCCGGCACTCGTGGCGGCGG
TGGAGGCGCAGCCGCTGCTGCCGCAGTTGCTGCGGATGGCGGCACTGGTA
ACGATCGTGTTGCCGGTGTGCGCGGTCCTGCTGCTGCTGGTGCCGCTGCG
GGTCGGCTGCCTGGTGCCGCACTGGGGGCCATTGCGGGTGCGCCATGAGG
ACAGCTTCGAGGAGCTGCAGTTGCCTCTACAGCTCCTGCTCTTTCACGTG
GTGCTGCCGACCGTCATCGAGCGGTGCAACGCCCAGGCCGTCGTCCGCCG
CGCGCTGCGCGCGTGGTTTCTCAACGTCTCGCAGCAGCTCGGGCTGCGGG
CCTTCCTGTTCCGGCCGGACCTTCCCGGCGGTGTGGAAAACCCAGCCATC
CGCGCCGTGGTCGCCGCCGGGGTTGTCAGGCTGGTCCAGGAGGGCGTTGG
CGCCATCCACGGCGTCAACGCCGCGATCCGCGAGGCGCAGGATGCCGCCC
TCGCCGCCGCCGCGTTGAGGAACCCCGCAGCACTGGCCGGTGCGAATCCG
CTGCCGCCGCAGCAGCAGCAGCAGCCGCCGCCAGCAGCTTTCCTGATTCG
AGTCGGTGCCGGCGGAGGGCAACCGGCTGCGGTAGCCGCCGCTGCGGCCG
ATCCCGCC
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