mRNA_P-wetherbeei_contig2027.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2027.5.1
Unique NamemRNA_P-wetherbeei_contig2027.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2027.5.1 vs. uniprot
Match: D7G9B1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B1_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 8.220e-18
Identity = 57/150 (38.00%), Postives = 82/150 (54.67%), Query Frame = 1
Query:  601 PAGETPLLAPAQVWALGLVLLKVWMRCVTIGGFGGXXXXXXGLSWRRRLDRVRRNGVWGVNFTETMRDVVLPALNSVGEFYFMPLMFAKGLLPLTFTDPVRLAQLQRLTFPAFVGLKAAAAAGAAGLQFLQSCHDSIRDEMYLLGTQLRN 1050
            P  ET  L   ++WALGLV +K+W RCV  G            +W+ RL R+R NG  GV+F  TM +V  P L+ VG+FYF P +  +  LPL   +   L  +Q+     F+ LKA  +A    +  +++ HD IRD+ YL+G +L N
Sbjct: 1489 PTEETAALTWGKIWALGLVCVKLWARCVLAGAVRDE-------AWQGRLRRLRENGFRGVDFKFTMLEVCFPLLDVVGQFYFWPHLLNRFALPLLVANQRDLRVIQKGMPFVFLLLKALWSAAMFVVNKMKALHDLIRDDEYLVGLELEN 1631          
BLAST of mRNA_P-wetherbeei_contig2027.5.1 vs. uniprot
Match: A0A6H5L475_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L475_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.100e-17
Identity = 55/150 (36.67%), Postives = 82/150 (54.67%), Query Frame = 1
Query:  601 PAGETPLLAPAQVWALGLVLLKVWMRCVTIGGFGGXXXXXXGLSWRRRLDRVRRNGVWGVNFTETMRDVVLPALNSVGEFYFMPLMFAKGLLPLTFTDPVRLAQLQRLTFPAFVGLKAAAAAGAAGLQFLQSCHDSIRDEMYLLGTQLRN 1050
            P  ET  L   ++WALGLV +K+W RCV  G            +W+ RL R+R NG  GV+F  T+ +V  P L+ VG+FYF P +  +  LPL   +   L  +Q+     F+ L+A  +A    +  +++ HD IRD+ YL+G +L N
Sbjct:  121 PTEETAALTWGKIWALGLVCVKLWARCVLAGAVRHE-------AWQGRLRRLRDNGFRGVDFKFTILEVCFPLLDVVGQFYFWPHLLNRFALPLLVANQRDLRVIQKGMPFVFLLLRALWSAAMFVVNKMKALHDLIRDDEYLVGLELEN 263          
BLAST of mRNA_P-wetherbeei_contig2027.5.1 vs. uniprot
Match: W7TZ38_9STRA (Ring u-box domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZ38_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.740e-14
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  553 MIGSVAQAVTVIPLRVPAGETPLLAPAQVWALGLVLLKVWMRCVTIGGFGGXXXXXXGLSWRRRLDRVRRNGVWGVNFTETMRDVVLPALNSVGEFYFMPLMFAKG 870
            ++G + +   ++P RVP  ETPL+   + W LGLV LK+ +RC+ +G  G          W+R+ +RV  NG W ++FT T+R VVLP L         P  F+K 
Sbjct:   41 LVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLGNDH------PWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKS 140          
BLAST of mRNA_P-wetherbeei_contig2027.5.1 vs. uniprot
Match: A0A4D9D9P7_9STRA (RING-CH-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9P7_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 8.710e-14
Identity = 59/211 (27.96%), Postives = 94/211 (44.55%), Query Frame = 1
Query:  553 MIGSVAQAVTVIPLRVPAGETPLLAPAQVWALGLVLLKVWMRCVTIGGFGGXXXXXXGLSWRRRLDRVRRNGVWGVNFTETMRDVVLPAL-----------------NSVGEFY----------------FMPLMFAKGLLPLTFTDPVR-----------LAQLQRLTFPAFVGLKAAAAAGAAGLQF-LQSCHDSIRDEMYLLGTQLRN 1050
            ++G + +   ++P RVP  ETPL+   + W LGLV LK+ +RC+ +G  G          W+R+ +RV  NG W ++F  T+R VVLP +                   +G  Y                F+P    + L P                   +A L+R+ + A++ L   +  GA GL    +  HD +RD++YL+G +LRN
Sbjct:  735 LVGLLFELAVILPARVPMDETPLIPLYEAWVLGLVFLKISVRCLLLGLLGNDH------PWKRKFERVGANGFWNLDFAWTLRHVVLPVICLFLSLLLPPYFFSKSVERLGYLYLRHVVLPAPLHPALPRFLPRFLLRVLAPAWHAQEQERDAYVSLVLYMIAGLKRMVYVAYL-LWRLSVYGARGLHSGFRHLHDKLRDDVYLVGVELRN 938          
BLAST of mRNA_P-wetherbeei_contig2027.5.1 vs. uniprot
Match: A0A388KVE1_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KVE1_CHABU)

HSP 1 Score: 77.4 bits (189), Expect = 1.040e-11
Identity = 55/183 (30.05%), Postives = 83/183 (45.36%), Query Frame = 1
Query:  553 MIGSVAQAVTVIPLRVPAGETPLLAPAQVWALGLVLLKVWMRCVTIG-----GFGGXXXXXXGLSWRRRLDRVRRNGVWGVNFTETMRDVVLPALNSVGEFYFMPLMFAKGLLPLTFTDPVRLAQLQRLTFPAFVGLKAAAAAGAAGL-----QFLQSCHDSIRDEMYLLGTQLRNADAITEG 1071
            +IG +   + V+PL  P  E   L   Q WA+GL+LL++WMR V +G     G G          WR + +R+R +G   ++    +++V+ P +  +     +P   AKGL+ L    P        L  P F  L    A     L      +L   HDSIRD+ YL+G +L N   +  G
Sbjct: 1131 LIGLLFDLLVVVPLHTPLDERLKLLYYQDWAVGLLLLEIWMRLVMLGQVMPFGIGDD-------RWRNKFERIRNDGFMRLHGMWVLKEVIAPIVGYLLTLLCLPYACAKGLMALISPSPQ-----MALLVPRFACLGTVVAVVLWRLLQKSRAWLIELHDSIRDDRYLIGQRLHNYTRVVGG 1301          
BLAST of mRNA_P-wetherbeei_contig2027.5.1 vs. uniprot
Match: A0A8J2QEB6_9NEOP ((African queen) hypothetical protein n=1 Tax=Danaus chrysippus TaxID=151541 RepID=A0A8J2QEB6_9NEOP)

HSP 1 Score: 66.6 bits (161), Expect = 1.230e-8
Identity = 44/161 (27.33%), Postives = 79/161 (49.07%), Query Frame = 1
Query:  574 AVTVIPLRVPAGETPLLAPAQVWALGLVLLKVWMRCVTIGGFGGXXXXXXGLSWRRRLDRVRRNGVWGVNFTETMRDVVLPALNSVGEFYFMPLMFAKGLLPLTFTDPVRLAQLQRLTFPAFVGLKAAAAAGAAGLQFLQSCHDSIRDEMYLLGTQLRNAD 1056
            A TVIPLRVP  ++P+L   Q WALG++  K+    + +G            S RR +++  R+G+  ++    +R V  P +  +G    +P + A  + PL  +   +   L R  +PA + +   AA     ++     ++ I+++ YL+G +L N D
Sbjct:  165 AGTVIPLRVPLEQSPVLFVLQDWALGVLYTKIVCALIMMGS---------DWSLRRAIEKAYRDGIREMDLQFILRSVAAPLVRWLGLALVVPYVLAHSVAPLVLSAHAQRNLLVRRVYPALLLIALLAALALFQIRQFTKLYEHIKNDKYLVGQRLVNYD 316          
BLAST of mRNA_P-wetherbeei_contig2027.5.1 vs. uniprot
Match: A0A6V7V400_9BILA (Hypothetical protein n=1 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7V400_9BILA)

HSP 1 Score: 58.9 bits (141), Expect = 1.960e-6
Identity = 42/168 (25.00%), Postives = 76/168 (45.24%), Query Frame = 1
Query:  553 MIGSVAQAVTVIPLRVPAGETPLLAPAQVWALGLVLLKVWMRCVTIGGFGGXXXXXXGLSW--RRRLDRVRRNGVWGVNFTETMRDVVLPALNSVGEFYFMPLMFAKGLLPLTFTDPVRLAQLQRLTFPAFVGLKAAAAAGAAGLQFLQSCHDSIRDEMYLLGTQLRN 1050
            M+G   Q + + PLRV   ++PL  P + WA+G+V  K+    V +G             W  +   +++  +G+W     E   ++V+P  N++      P + +K ++     D      + R ++P F+G     A      + L+     IR++ YL+GTQL N
Sbjct:   41 MLGFYFQMLVISPLRVAIFQSPLFFPWKEWAMGVVHFKIICASVLMGP-----------DWWLKTAFEQIYADGIWNFQLKELYINMVIPIGNALSFLIAFPYVASKFIMLFVEADRENQVIIIRYSYPFFLGSICIVAFLIWQWKKLKMLAQKIRNDKYLIGTQLVN 197          
BLAST of mRNA_P-wetherbeei_contig2027.5.1 vs. uniprot
Match: A0A6V7ULD7_9BILA (Hypothetical protein n=1 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7ULD7_9BILA)

HSP 1 Score: 57.8 bits (138), Expect = 2.100e-5
Identity = 41/168 (24.40%), Postives = 76/168 (45.24%), Query Frame = 1
Query:  553 MIGSVAQAVTVIPLRVPAGETPLLAPAQVWALGLVLLKVWMRCVTIGGFGGXXXXXXGLSW--RRRLDRVRRNGVWGVNFTETMRDVVLPALNSVGEFYFMPLMFAKGLLPLTFTDPVRLAQLQRLTFPAFVGLKAAAAAGAAGLQFLQSCHDSIRDEMYLLGTQLRN 1050
            M+G   Q + + PLRV   ++PL  P + WA+G+V  K+    V +G             W  +   +++  +G+W     +   ++V+P  N++      P + +K ++     D      + R ++P F+G     A      + L+     IR++ YL+GTQL N
Sbjct:  847 MLGFYFQMLVISPLRVAIFQSPLFFPWKEWAMGVVHFKIICASVLMGP-----------DWWLKTAFEQIYADGIWNFQLKDLYINMVIPIGNALSFLIAFPYVASKFIMLFVEADRENQVIIIRYSYPFFLGSICIVAFLIWQWKKLKMLAQKIRNDKYLIGTQLVN 1003          
BLAST of mRNA_P-wetherbeei_contig2027.5.1 vs. uniprot
Match: A0A1W2W027_CIOIN (E3 ubiquitin-protein ligase MARCH6 n=1 Tax=Ciona intestinalis TaxID=7719 RepID=A0A1W2W027_CIOIN)

HSP 1 Score: 56.2 bits (134), Expect = 6.250e-5
Identity = 42/166 (25.30%), Postives = 78/166 (46.99%), Query Frame = 1
Query:  553 MIGSVAQAVTVIPLRVPAGETPLLAPAQVWALGLVLLKVWMRCVTIGGFGGXXXXXXGLSWRRRLDRVRRNGVWGVNFTETMRDVVLPALNSVGEFYFMPLMFAKG-LLPLTF-TDPVRLAQLQRLTFPAFVGLKAAAAAGAAGLQFLQSCHDSIRDEMYLLGTQL 1044
            M+G +   V +IPLRVPA +TP++   Q WALG++L K+   C+  G            + +  ++     G+  ++   T+ D V P + ++     +P  +  G ++P+ F T+    A     T+P  +   +        ++  Q   D I++E YL+G +L
Sbjct:  723 MMGVLFDLVVIIPLRVPAHQTPVIFLWQDWALGVLLFKLVTACLIFGPDN---------TIKTAIEEAYNQGLQRMSLKTTLTDTVFPVIKTLALCLTIP--YVTGHIIPVIFSTNETLTAFFYWRTYPLMISCASFICFCIFEIKQFQRLCDRIKNERYLIGKRL 877          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2027.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G9B1_ECTSI8.220e-1838.00RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5L475_9PHAE1.100e-1736.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TZ38_9STRA1.740e-1436.79Ring u-box domain-containing protein (Fragment) n=... [more]
A0A4D9D9P7_9STRA8.710e-1427.96RING-CH-type domain-containing protein n=1 Tax=Nan... [more]
A0A388KVE1_CHABU1.040e-1130.05Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A8J2QEB6_9NEOP1.230e-827.33(African queen) hypothetical protein n=1 Tax=Danau... [more]
A0A6V7V400_9BILA1.960e-625.00Hypothetical protein n=1 Tax=Meloidogyne enterolob... [more]
A0A6V7ULD7_9BILA2.100e-524.40Hypothetical protein n=1 Tax=Meloidogyne enterolob... [more]
A0A1W2W027_CIOIN6.250e-525.30E3 ubiquitin-protein ligase MARCH6 n=1 Tax=Ciona i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2027contigP-wetherbeei_contig2027:3210..4358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G9B1
PFAMsRINGv
Model size1075
Max annot lvl2759|Eukaryota
KEGG koko:K10661
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.35e-18
EggNOG OGsCOG5183@1|root,KOG1609@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-03_004330.1
EC2.3.2.27
Descriptionzinc ion binding
Cds size1074
COG categoryA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.2174485-CDS-P-wetherbeei_contig2027:3209..35571683186195.2174485-CDS-P-wetherbeei_contig2027:3209..3557Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2027 3210..3557 -
1683186195.227017-CDS-P-wetherbeei_contig2027:3632..43581683186195.227017-CDS-P-wetherbeei_contig2027:3632..4358Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2027 3633..4358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2027.5.1prot_P-wetherbeei_contig2027.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2027 3210..4358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2027.5.1

>prot_P-wetherbeei_contig2027.5.1 ID=prot_P-wetherbeei_contig2027.5.1|Name=mRNA_P-wetherbeei_contig2027.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=358bp
AAAAAAAAAAGVPAAPGRAPPAWVPVDPVAVAGGGPIPLRPAAAAGFAPA
NAAAVAPAAAPLGGSNSWHSQLSLHLRLAALVLVTAVAMVVAAALGYHVP
VLCGRAAFVAFGLSVGNDLYCSLAGCVLTWGMWLAAGAACAHANAVLRRG
RAALGTAAAAVAASVAVAAKWLVILSLWLAALPLMIGSVAQAVTVIPLRV
PAGETPLLAPAQVWALGLVLLKVWMRCVTIGGFGGGGGAGGGLSWRRRLD
RVRRNGVWGVNFTETMRDVVLPALNSVGEFYFMPLMFAKGLLPLTFTDPV
RLAQLQRLTFPAFVGLKAAAAAGAAGLQFLQSCHDSIRDEMYLLGTQLRN
ADAITEG*
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mRNA from alignment at P-wetherbeei_contig2027:3210..4358-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2027.5.1 ID=mRNA_P-wetherbeei_contig2027.5.1|Name=mRNA_P-wetherbeei_contig2027.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1149bp|location=Sequence derived from alignment at P-wetherbeei_contig2027:3210..4358- (Phaeothamnion wetherbeei SAG_119_79)
GCTGCTGCCGCGGCCGCCGCCGCCGCAGCGGGAGTGCCCGCTGCTCCTGG TCGGGCCCCCCCCGCCTGGGTGCCTGTGGATCCTGTTGCCGTGGCGGGTG GGGGCCCGATTCCTTTGCGCCCCGCCGCTGCGGCCGGCTTCGCCCCAGCC AACGCCGCCGCCGTTGCTCCCGCCGCTGCGCCACTCGGCGGCAGCAACTC GTGGCACTCCCAGCTGAGCCTGCACCTGCGCCTCGCCGCGCTGGTGTTGG TGACGGCAGTCGCGATGGTGGTAGCGGCGGCACTGGGCTACCATGTCCCC GTGCTCTGCGGGCGCGCCGCCTTCGTCGCATTTGGCCTGAGCGTCGGCAA CGATCTCTACTGCAGCCTCGCCGGCTGCGTCCTGACCTGGGGCATGTGGC TGGCGGCCGGCGCCGCCTGCGCCCACGCCAATGCTGTGCTCCGGCGCGGC CGCGCGGCGCTGGGCACCGCCGCCGCCGCCGTGGCGGCCTCGGTGGCAGT GGCGGCTAAATGGCTGGTGATTCTGTCGCTGTGGCTGGCGGCGCTGCCGC TCATGATCGGGTCGGTAGCGCAGGCCGTGACGGTCATCCCGCTGCGCGTG CCGGCGGGGGAGACGCCACTGTTGGCGCCGGCGCAGGTGTGGGCGCTCGG CCTCGTCCTGCTCAAGGTGTGGATGCGCTGCGTAACCATTGGTGGGTTTG GCGGAGGCGGTGGCGCTGGAGGCGGCGTCGGTGGCGGCGGCGGCGGCGGC GACGGTGGTGCCGGTGGGGGGGGCGGCGGCGGCGCCGGCGGGGTTCCGGA GCTGAGCTGGCGGCGGCGGCTGGATCGGGTGCGGCGCAACGGCGTGTGGG GGGTCAACTTCACGGAGACGATGCGCGACGTGGTGTTGCCGGCGCTCAAC AGCGTCGGCGAGTTCTACTTCATGCCGCTCATGTTCGCGAAGGGCCTCCT GCCGCTGACGTTCACGGACCCTGTCCGGCTGGCGCAGCTGCAGCGGCTGA CGTTCCCGGCGTTTGTCGGGCTTAAGGCGGCGGCGGCAGCGGGGGCGGCG GGCCTACAGTTTTTGCAGAGCTGCCACGACAGCATCCGCGACGAGATGTA CCTGCTTGGGACGCAGCTGCGGAACGCCGACGCCATCACGGAAGGATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2027:3210..4358-

>mRNA_P-wetherbeei_contig2027.5.1 ID=mRNA_P-wetherbeei_contig2027.5.1|Name=mRNA_P-wetherbeei_contig2027.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1074bp|location=Sequence derived from alignment at P-wetherbeei_contig2027:3210..4358- (Phaeothamnion wetherbeei SAG_119_79)
GCTGCTGCCGCGGCCGCCGCCGCCGCAGCGGGAGTGCCCGCTGCTCCTGG
TCGGGCCCCCCCCGCCTGGGTGCCTGTGGATCCTGTTGCCGTGGCGGGTG
GGGGCCCGATTCCTTTGCGCCCCGCCGCTGCGGCCGGCTTCGCCCCAGCC
AACGCCGCCGCCGTTGCTCCCGCCGCTGCGCCACTCGGCGGCAGCAACTC
GTGGCACTCCCAGCTGAGCCTGCACCTGCGCCTCGCCGCGCTGGTGTTGG
TGACGGCAGTCGCGATGGTGGTAGCGGCGGCACTGGGCTACCATGTCCCC
GTGCTCTGCGGGCGCGCCGCCTTCGTCGCATTTGGCCTGAGCGTCGGCAA
CGATCTCTACTGCAGCCTCGCCGGCTGCGTCCTGACCTGGGGCATGTGGC
TGGCGGCCGGCGCCGCCTGCGCCCACGCCAATGCTGTGCTCCGGCGCGGC
CGCGCGGCGCTGGGCACCGCCGCCGCCGCCGTGGCGGCCTCGGTGGCAGT
GGCGGCTAAATGGCTGGTGATTCTGTCGCTGTGGCTGGCGGCGCTGCCGC
TCATGATCGGGTCGGTAGCGCAGGCCGTGACGGTCATCCCGCTGCGCGTG
CCGGCGGGGGAGACGCCACTGTTGGCGCCGGCGCAGGTGTGGGCGCTCGG
CCTCGTCCTGCTCAAGGTGTGGATGCGCTGCGTAACCATTGGTGGGTTTG
GCGGAGGCGGTGGCGCTGGAGGCGGCCTGAGCTGGCGGCGGCGGCTGGAT
CGGGTGCGGCGCAACGGCGTGTGGGGGGTCAACTTCACGGAGACGATGCG
CGACGTGGTGTTGCCGGCGCTCAACAGCGTCGGCGAGTTCTACTTCATGC
CGCTCATGTTCGCGAAGGGCCTCCTGCCGCTGACGTTCACGGACCCTGTC
CGGCTGGCGCAGCTGCAGCGGCTGACGTTCCCGGCGTTTGTCGGGCTTAA
GGCGGCGGCGGCAGCGGGGGCGGCGGGCCTACAGTTTTTGCAGAGCTGCC
ACGACAGCATCCGCGACGAGATGTACCTGCTTGGGACGCAGCTGCGGAAC
GCCGACGCCATCACGGAAGGATAG
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