mRNA_P-wetherbeei_contig20264.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20264.1.1
Unique NamemRNA_P-wetherbeei_contig20264.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20264.1.1 vs. uniprot
Match: UPI0019C50E1F (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=UPI0019C50E1F)

HSP 1 Score: 134 bits (337), Expect = 2.060e-39
Identity = 69/81 (85.19%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:    1 MIKSALLATAITLAFVVPAYAQQTVKCDEASLTQMRKDIDTMTDKEKQAKSVESWTAAEAAFKANKLDDCNARIGDTGKNM 243
            MIKSALLATAI  AFVVPAYAQQTVKCDEASLTQMRKDID +TD++K+AKS+ESWTAA+AAFKAN LD+CNARIGDTGK+M
Sbjct:    1 MIKSALLATAICFAFVVPAYAQQTVKCDEASLTQMRKDIDALTDQDKKAKSIESWTAADAAFKANNLDECNARIGDTGKSM 81
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20264.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0019C50E1F2.060e-3985.19Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20264contigP-wetherbeei_contig20264:399..641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog794846.AJQU01000083_gene5498
Model size243
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue0.000142
EggNOG OGs2BJ1B@1|root,32D9X@2|Bacteria,1QSCC@1224|Proteobacteria,2V1DR@28211|Alphaproteobacteria,4BHPT@82115|Rhizobiaceae
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.0141723-CDS-P-wetherbeei_contig20264:398..6411683186195.0141723-CDS-P-wetherbeei_contig20264:398..641Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20264 399..641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20264.1.1prot_P-wetherbeei_contig20264.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20264 399..641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20264.1.1

>prot_P-wetherbeei_contig20264.1.1 ID=prot_P-wetherbeei_contig20264.1.1|Name=mRNA_P-wetherbeei_contig20264.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
MIKSALLATAITLAFVVPAYAQQTVKCDEASLTQMRKDIDTMTDKEKQAK
SVESWTAAEAAFKANKLDDCNARIGDTGKNM
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mRNA from alignment at P-wetherbeei_contig20264:399..641+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20264.1.1 ID=mRNA_P-wetherbeei_contig20264.1.1|Name=mRNA_P-wetherbeei_contig20264.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig20264:399..641+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATTAAATCAGCTCTTTTGGCCACCGCCATTACTCTTGCCTTCGTTGT
TCCGGCCTATGCCCAGCAGACGGTCAAGTGCGATGAAGCCTCCCTGACGC
AGATGCGCAAGGACATTGATACAATGACCGACAAGGAAAAGCAGGCAAAG
TCTGTTGAAAGCTGGACTGCCGCCGAAGCCGCCTTCAAGGCCAACAAACT
CGATGATTGCAACGCGCGCATCGGCGACACCGGCAAGAACATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20264:399..641+

>mRNA_P-wetherbeei_contig20264.1.1 ID=mRNA_P-wetherbeei_contig20264.1.1|Name=mRNA_P-wetherbeei_contig20264.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig20264:399..641+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATTAAATCAGCTCTTTTGGCCACCGCCATTACTCTTGCCTTCGTTGT
TCCGGCCTATGCCCAGCAGACGGTCAAGTGCGATGAAGCCTCCCTGACGC
AGATGCGCAAGGACATTGATACAATGACCGACAAGGAAAAGCAGGCAAAG
TCTGTTGAAAGCTGGACTGCCGCCGAAGCCGCCTTCAAGGCCAACAAACT
CGATGATTGCAACGCGCGCATCGGCGACACCGGCAAGAACATG
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