mRNA_P-wetherbeei_contig20258.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20258.1.1
Unique NamemRNA_P-wetherbeei_contig20258.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20258.1.1 vs. uniprot
Match: A0A5C4RR88_9GAMM (Galactosyldiacylglycerol synthase n=1 Tax=Arenimonas terrae TaxID=2546226 RepID=A0A5C4RR88_9GAMM)

HSP 1 Score: 50.8 bits (120), Expect = 1.420e-6
Identity = 23/69 (33.33%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:   28 GEVLGTISDQDLHILQEVLADEGPFDTDYYLQEGTLELLSQAGLSPDSMLVLKESLEHRNGELEFGWER 234
            G  LG+IS+ DL +L +   +E   D DY++ E T++++ +AG SPD   +L++++   +G ++  W R
Sbjct:   10 GATLGSISEADLQVLLDQFEEESSTDRDYFIDEQTVQIIEEAGASPDLCALLRKAIAGTDG-IDIVWSR 77
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20258.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5C4RR88_9GAMM1.420e-633.33Galactosyldiacylglycerol synthase n=1 Tax=Arenimon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20258contigP-wetherbeei_contig20258:59..298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog926560.KE387027_gene552
PFAMsGlyco_tran_28_C,Glycos_transf_1,MGDG_synth
Model size240
Max annot lvl2|Bacteria
KEGG rclassRC00005,RC00059
KEGG koko:K03429
KEGG ReactionR02689,R04377
KEGG Pathwayko00561,ko01100,map00561,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.48e-05
EggNOG OGsCOG0707@1|root,COG0707@2|Bacteria
EC2.4.1.315
Descriptionundecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity
Cds size240
COG categoryM
CAZyGT28
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186194.794961-CDS-P-wetherbeei_contig20258:58..2981683186194.794961-CDS-P-wetherbeei_contig20258:58..298Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20258 59..298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20258.1.1prot_P-wetherbeei_contig20258.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20258 59..298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20258.1.1

>prot_P-wetherbeei_contig20258.1.1 ID=prot_P-wetherbeei_contig20258.1.1|Name=mRNA_P-wetherbeei_contig20258.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
MHTIVDRICGEVLGTISDQDLHILQEVLADEGPFDTDYYLQEGTLELLSQ
AGLSPDSMLVLKESLEHRNGELEFGWERNS
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mRNA from alignment at P-wetherbeei_contig20258:59..298-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20258.1.1 ID=mRNA_P-wetherbeei_contig20258.1.1|Name=mRNA_P-wetherbeei_contig20258.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig20258:59..298- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACACAATCGTTGACCGCATCTGCGGTGAAGTTCTGGGAACCATTTC
CGACCAGGACCTACACATTCTTCAAGAGGTTCTGGCCGACGAAGGACCGT
TCGACACCGACTACTACCTGCAGGAAGGCACTCTCGAGCTGCTTTCCCAG
GCCGGCCTCTCGCCCGACTCGATGCTCGTTCTCAAAGAGAGCCTCGAGCA
TCGCAACGGCGAACTTGAATTTGGCTGGGAACGCAACTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20258:59..298-

>mRNA_P-wetherbeei_contig20258.1.1 ID=mRNA_P-wetherbeei_contig20258.1.1|Name=mRNA_P-wetherbeei_contig20258.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig20258:59..298- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACACAATCGTTGACCGCATCTGCGGTGAAGTTCTGGGAACCATTTC
CGACCAGGACCTACACATTCTTCAAGAGGTTCTGGCCGACGAAGGACCGT
TCGACACCGACTACTACCTGCAGGAAGGCACTCTCGAGCTGCTTTCCCAG
GCCGGCCTCTCGCCCGACTCGATGCTCGTTCTCAAAGAGAGCCTCGAGCA
TCGCAACGGCGAACTTGAATTTGGCTGGGAACGCAACTCC
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