mRNA_P-wetherbeei_contig20256.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20256.1.1
Unique NamemRNA_P-wetherbeei_contig20256.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20256.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20256contigP-wetherbeei_contig20256:2..1236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5693.XP_808106.1
Model size1106
Max annot lvl5653|Kinetoplastida
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.29e-08
EggNOG OGs28HHA@1|root,2QPV7@2759|Eukaryota,3XSXV@5653|Kinetoplastida
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186194.746877-CDS-P-wetherbeei_contig20256:1..1241683186194.746877-CDS-P-wetherbeei_contig20256:1..124Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20256 2..124 +
1683186194.755171-CDS-P-wetherbeei_contig20256:253..4931683186194.755171-CDS-P-wetherbeei_contig20256:253..493Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20256 254..493 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186194.763095-UTR-P-wetherbeei_contig20256:493..12361683186194.763095-UTR-P-wetherbeei_contig20256:493..1236Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20256 494..1236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20256.1.1prot_P-wetherbeei_contig20256.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20256 2..493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20256.1.1

>prot_P-wetherbeei_contig20256.1.1 ID=prot_P-wetherbeei_contig20256.1.1|Name=mRNA_P-wetherbeei_contig20256.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MDEGLRHTDGFKRWSAFASAFHTLRESFLASKEVERRLIARCEEIKAELV
DSGTRLQLALLVRAEDERTMARLRRETEASLRTAKLAQRKEKDAREVALQ
LKAECDQLRAQVGSSVLDEG*
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mRNA from alignment at P-wetherbeei_contig20256:2..1236+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20256.1.1 ID=mRNA_P-wetherbeei_contig20256.1.1|Name=mRNA_P-wetherbeei_contig20256.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1235bp|location=Sequence derived from alignment at P-wetherbeei_contig20256:2..1236+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGAAGGCTTGCGGCACACCGACGGCTTCAAGCGGTGGTCAGCGTT
CGCGTCCGCGTTCCACACGCTCCGCGAAAGCTTCCTCGCCTCCAAAGAGG
TCGAGCGTCGTCTTATCGCCAGAGTGAGCGACTTCTTTCCTAACCAGACG
GATCTACCTTTCCAGCGACTTATGCGTAGTGCTGCTTGCTCAACTTGTTT
CTGCGGCTTTACTTACGCAACAAGTTAATTTGCCTTTGCGCTCACCCTGC
AGTGTGAGGAGATCAAGGCTGAGCTGGTCGACAGCGGGACGCGATTGCAG
CTGGCGTTGCTGGTGCGAGCGGAAGACGAAAGGACAATGGCCCGATTGAG
GCGCGAAACCGAAGCTTCTTTGCGCACGGCCAAGTTGGCACAGCGGAAAG
AGAAGGACGCCAGAGAAGTCGCGTTGCAACTCAAGGCGGAGTGCGATCAA
CTGCGAGCACAGGTAGGAAGTAGCGTTCTTGATGAAGGATAACAGAATCC
CTTCCGCCTGTGCACCGTTCGGCGGTGATAAAGGTTTGATACTTGATTAG
GATGGTGGGCTTTCATTGGACATAATGTACTTTCAGCCGTTTCTTGCCCA
TAAGACATAATGTCGACCGCTAGACCACAACAATCTCCTCGTTGAATAGG
TCGCCGTCCTGAGTGACTCTCGGGTGCTCGATAGAGAGGCTTTGAGAAAC
ACGGGCGCAACAGGCAGCAGCGGCGGCGGCTGCGGCACAGGTGCGGTCCT
TGCCAGCGTTGGTGCGGGTCCTAGCGGCACCGGCGGGAGTGGCTGGGAGG
GCAGCCACCCGGCCCTTTCGGGAGAAGCGCCGGTGGGTGAGGGAATTTCG
TCCCCCGGCGGGAGCTTCGGCGGCGGCGGCCAAAGGGATCCTTCCGGCGG
CCATCCGGCGTGCGACGGAAGGCAACGAGCCAGCGGGAGCCACTGCGGGA
ACCTCGGCGGCGGCCGACAGCCCAGCCGCGAGGCGCCCCTGCTGAGCCCG
GTGCGCACAACGGCGGACGGGGGGAGGCGTGGCGTGCACACACACCAGGC
AGGCATCCGCGCCGCGACCCTGGATCCCGTCAACCAGTTTCAGGGCGGTC
ATGGCGTCTTGAGGGATGCACCGTCCGCGCCGCCATCGTTCCAGCGCTTC
AAGAGGTCGGCGACCGATATTTGGACACCGGGGCGGTAGAAATACATTCT
TAGCCTCGTCATTTTAAAGTCAACGAGACGCAATA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20256:2..1236+

>mRNA_P-wetherbeei_contig20256.1.1 ID=mRNA_P-wetherbeei_contig20256.1.1|Name=mRNA_P-wetherbeei_contig20256.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig20256:2..1236+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGAAGGCTTGCGGCACACCGACGGCTTCAAGCGGTGGTCAGCGTT
CGCGTCCGCGTTCCACACGCTCCGCGAAAGCTTCCTCGCCTCCAAAGAGG
TCGAGCGTCGTCTTATCGCCAGATGTGAGGAGATCAAGGCTGAGCTGGTC
GACAGCGGGACGCGATTGCAGCTGGCGTTGCTGGTGCGAGCGGAAGACGA
AAGGACAATGGCCCGATTGAGGCGCGAAACCGAAGCTTCTTTGCGCACGG
CCAAGTTGGCACAGCGGAAAGAGAAGGACGCCAGAGAAGTCGCGTTGCAA
CTCAAGGCGGAGTGCGATCAACTGCGAGCACAGGTAGGAAGTAGCGTTCT
TGATGAAGGATAA
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