mRNA_P-wetherbeei_contig2025.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2025.3.1
Unique NamemRNA_P-wetherbeei_contig2025.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig2025.3.1 vs. uniprot
Match: A0A835ZEM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEM9_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.270e-22
Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:    4 GKTSLLFDFAYRRALRGQRVAFICDKHKVERSLPAPFLQSKCGGSASSAGAHHGDLEWEPSALELIGLKYVESREDLLWYLGSLQLLPPDARPAVLVVDDIDVI 315
            G++SLLFD AYR A RG RV +IC K ++ER LP    Q++          H     W+P+ALE IG+KYV SREDLLW+LGS+Q+L  +A P  L+VDDIDVI
Sbjct:   53 GRSSLLFDHAYRLARRGLRVTYICMKARIERQLPLQCAQAQ--------EPHDAPQGWDPAALERIGMKYVASREDLLWFLGSVQMLRREAFPCALLVDDIDVI 148
[Close]
BLAST of mRNA_P-wetherbeei_contig2025.3.1 vs. uniprot
Match: UPI000CE26717 (uncharacterized protein LOC111988766 isoform X4 n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE26717)

HSP 1 Score: 54.3 bits (129), Expect = 7.150e-5
Identity = 37/102 (36.27%), Postives = 51/102 (50.00%), Query Frame = 1 
Query:    1 CGKTSLLFDFAYRRALRGQR-VAFICDKHKVERSLPAPFLQSKCGGSASSAGAHHGDLEWEPSALELIGLKYVESREDLLWYLGSLQLLPPDARPAVLVVDD 303
            CGK+SLLF FA+  AL G R V FIC++ K+E +   PFL      S+ +               + I +KYV+  E +  Y  +  L   D  PA +VVDD
Sbjct:   36 CGKSSLLFQFAFNSALDGNRNVVFICNRRKLESN--PPFLSQGIDPSSDT--------------FQSIQMKYVDDDEGIKNYFAAFHL--HDTFPAAVVVDD 119
[Close]
BLAST of mRNA_P-wetherbeei_contig2025.3.1 vs. uniprot
Match: UPI000CE21580 (uncharacterized protein LOC111988766 isoform X2 n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE21580)

HSP 1 Score: 54.3 bits (129), Expect = 9.370e-5
Identity = 37/102 (36.27%), Postives = 51/102 (50.00%), Query Frame = 1 
Query:    1 CGKTSLLFDFAYRRALRGQR-VAFICDKHKVERSLPAPFLQSKCGGSASSAGAHHGDLEWEPSALELIGLKYVESREDLLWYLGSLQLLPPDARPAVLVVDD 303
            CGK+SLLF FA+  AL G R V FIC++ K+E +   PFL      S+ +               + I +KYV+  E +  Y  +  L   D  PA +VVDD
Sbjct:   36 CGKSSLLFQFAFNSALDGNRNVVFICNRRKLESN--PPFLSQGIDPSSDT--------------FQSIQMKYVDDDEGIKNYFAAFHL--HDTFPAAVVVDD 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2025.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZEM9_9STRA1.270e-2252.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI000CE267177.150e-536.27uncharacterized protein LOC111988766 isoform X4 n=... [more]
UPI000CE215809.370e-536.27uncharacterized protein LOC111988766 isoform X2 n=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2025contigP-wetherbeei_contig2025:4778..6280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4565.Traes_1AL_F3CFD43EB.2
PFAMsF-box,FBA_1
Model size1349
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.58e-07
EggNOG OGs28PVH@1|root,2QWI4@2759|Eukaryota,37PJ0@33090|Viridiplantae,3GFEC@35493|Streptophyta,3KTGV@4447|Liliopsida,3ICFW@38820|Poales
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-07_004360.1
Cds size978
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186194.5389397-UTR-P-wetherbeei_contig2025:4777..51471683186194.5389397-UTR-P-wetherbeei_contig2025:4777..5147Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2025 4778..5147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186194.5531678-CDS-P-wetherbeei_contig2025:5147..60001683186194.5531678-CDS-P-wetherbeei_contig2025:5147..6000Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2025 5148..6000 -
1683186194.5688343-CDS-P-wetherbeei_contig2025:6155..62801683186194.5688343-CDS-P-wetherbeei_contig2025:6155..6280Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2025 6156..6280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2025.3.1prot_P-wetherbeei_contig2025.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2025 5148..6280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2025.3.1

>prot_P-wetherbeei_contig2025.3.1 ID=prot_P-wetherbeei_contig2025.3.1|Name=mRNA_P-wetherbeei_contig2025.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=326bp
CGKTSLLFDFAYRRALRGQRVAFICDKHKVERSLPAPFLQSKCGGSASSA
GAHHGDLEWEPSALELIGLKYVESREDLLWYLGSLQLLPPDARPAVLVVD
DIDVIAATTAGAASRAAGAAAASGGPGVTPRRGKAAAEQSADILHVSALL
QDAANALQQAGAPLPWIERRSCRAAVPPPSERLSSRREAMANSGGGYGDG
GGSCGDTGSNGGGVGCDGGGGGGGGEVAVAVSCCTTSALLLGLMRRSLPL
CVRVRRTTNVETYSLGPDETLPPVAGVSAVAAAGAGTGMDGATGAAGVLL
DKTGRQWGDRFFEHRDGAFVHVPVT*
back to top

mRNA from alignment at P-wetherbeei_contig2025:4778..6280-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2025.3.1 ID=mRNA_P-wetherbeei_contig2025.3.1|Name=mRNA_P-wetherbeei_contig2025.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1503bp|location=Sequence derived from alignment at P-wetherbeei_contig2025:4778..6280- (Phaeothamnion wetherbeei SAG_119_79)
TGCGGCAAGACCTCGCTGCTGTTCGACTTCGCCTACCGCCGCGCCTTGCG
TGGCCAGCGCGTGGCGTTCATCTGCGACAAGCACAAGGTCGAGCGATCCC
TCCCGGCGCCCTTCCTCCAATCAAAGTGAGCGGAGCCATTGTTGTAACAC
TTCATTTCGTTTACACGGTTGCGGACTGTGCGATCATCGAATCAAAAATG
GCCTCCTTCCTTTCCCACACAGAATTCTCCTCTCGCCTCGACCTCTGCGC
GCCTTCCCTTGTTCTTTGATTTTGCCGCAGATGCGGCGGCTCTGCATCTT
CCGCGGGCGCCCACCACGGCGACTTGGAGTGGGAACCGAGCGCCCTGGAG
CTGATCGGCCTGAAATACGTCGAGAGCCGAGAAGACCTATTGTGGTACCT
CGGCAGCCTCCAGCTGCTGCCGCCGGACGCCCGCCCGGCCGTCCTCGTCG
TCGATGACATTGACGTCATCGCCGCGACTACTGCCGGTGCCGCTTCTCGC
GCGGCCGGCGCGGCCGCCGCTTCTGGCGGCCCCGGCGTGACGCCGAGAAG
GGGCAAGGCGGCGGCGGAGCAATCTGCCGACATTTTGCATGTGTCGGCGC
TGCTTCAGGACGCCGCGAACGCCTTGCAGCAGGCGGGAGCTCCTCTGCCG
TGGATCGAACGGCGTTCCTGCCGCGCCGCGGTGCCCCCGCCGTCGGAGCG
GCTTTCGTCCCGCAGGGAAGCGATGGCAAATAGCGGCGGCGGCTACGGCG
ATGGCGGCGGCAGCTGCGGCGACACCGGCAGCAACGGTGGCGGCGTAGGC
TGCGACGGCGGCGGCGGCGGCGGCGGCGGTGAGGTGGCAGTGGCAGTGTC
GTGCTGCACAACTAGCGCGCTCCTGCTGGGGTTGATGCGGCGGTCGCTAC
CGCTGTGCGTACGCGTCCGCCGCACGACAAACGTCGAGACGTACTCGCTG
GGCCCCGACGAGACGCTGCCGCCGGTCGCTGGCGTCTCGGCGGTTGCCGC
TGCGGGAGCCGGAACCGGAATGGATGGAGCCACTGGAGCCGCTGGAGTCC
TATTAGACAAGACCGGACGCCAGTGGGGCGATCGCTTTTTTGAGCATCGC
GACGGCGCGTTTGTGCACGTGCCGGTGACGTGAAAAACGTGGCAACAGGT
GCTGCAGAGACTTGCTAAAGCCAGACTTTGGGTCTATTGAATCGTAGGGA
CTTCTCGAATCTCGCCAGTCCCAATCGAATTGCGATCTGACAGTGTTGGG
AAAAGACGAAGACGTGCGGAAAGAGGGTTCATAAAGGTGTAGTGTGGCGA
AACGGACGGTGTTGGCACCGTATACCATCAATCTGGAGCACTGATGGGGC
ACGGGAGAAAGGGAGGCACGGCAGCGAGCGGAAAGGCGCCAAAATGAAGC
ATACCTACTGGTTGATGTCCTTGAAAAACATAGACTTAAGGTCAGCCTTA
GTGAATGGAATAAGATGCACAGACCTGAGACGAGAGCAGATGTAGTAAAC
GCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig2025:4778..6280-

>mRNA_P-wetherbeei_contig2025.3.1 ID=mRNA_P-wetherbeei_contig2025.3.1|Name=mRNA_P-wetherbeei_contig2025.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=978bp|location=Sequence derived from alignment at P-wetherbeei_contig2025:4778..6280- (Phaeothamnion wetherbeei SAG_119_79)
TGCGGCAAGACCTCGCTGCTGTTCGACTTCGCCTACCGCCGCGCCTTGCG
TGGCCAGCGCGTGGCGTTCATCTGCGACAAGCACAAGGTCGAGCGATCCC
TCCCGGCGCCCTTCCTCCAATCAAAATGCGGCGGCTCTGCATCTTCCGCG
GGCGCCCACCACGGCGACTTGGAGTGGGAACCGAGCGCCCTGGAGCTGAT
CGGCCTGAAATACGTCGAGAGCCGAGAAGACCTATTGTGGTACCTCGGCA
GCCTCCAGCTGCTGCCGCCGGACGCCCGCCCGGCCGTCCTCGTCGTCGAT
GACATTGACGTCATCGCCGCGACTACTGCCGGTGCCGCTTCTCGCGCGGC
CGGCGCGGCCGCCGCTTCTGGCGGCCCCGGCGTGACGCCGAGAAGGGGCA
AGGCGGCGGCGGAGCAATCTGCCGACATTTTGCATGTGTCGGCGCTGCTT
CAGGACGCCGCGAACGCCTTGCAGCAGGCGGGAGCTCCTCTGCCGTGGAT
CGAACGGCGTTCCTGCCGCGCCGCGGTGCCCCCGCCGTCGGAGCGGCTTT
CGTCCCGCAGGGAAGCGATGGCAAATAGCGGCGGCGGCTACGGCGATGGC
GGCGGCAGCTGCGGCGACACCGGCAGCAACGGTGGCGGCGTAGGCTGCGA
CGGCGGCGGCGGCGGCGGCGGCGGTGAGGTGGCAGTGGCAGTGTCGTGCT
GCACAACTAGCGCGCTCCTGCTGGGGTTGATGCGGCGGTCGCTACCGCTG
TGCGTACGCGTCCGCCGCACGACAAACGTCGAGACGTACTCGCTGGGCCC
CGACGAGACGCTGCCGCCGGTCGCTGGCGTCTCGGCGGTTGCCGCTGCGG
GAGCCGGAACCGGAATGGATGGAGCCACTGGAGCCGCTGGAGTCCTATTA
GACAAGACCGGACGCCAGTGGGGCGATCGCTTTTTTGAGCATCGCGACGG
CGCGTTTGTGCACGTGCCGGTGACGTGA
back to top