mRNA_P-wetherbeei_contig20242.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig20242.1.1
Unique Name	mRNA_P-wetherbeei_contig20242.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig20242.1.1 vs. uniprot
Match: D8LJS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS2_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 9.040e-39
Identity = 69/99 (69.70%), Postives = 76/99 (76.77%), Query Frame = 1

Query:    1 EYMKSKSFCEDLTEGKFSFPIIHCVRVQPADRRLLHILQQRTGDIDVKKHAVAWMRQCGSIDYTRAATRMLKQEILDDISALGGHAQLSRLIEELDNQL 297
            EYMK KSFCEDLTEGKFSFPIIHCVR +P D RLL+IL+QRT D+DVKKHAV WM+Q GS  YTR     LK+ I + I  LGGH  LSRLIE LD QL
Sbjct:  208 EYMKGKSFCEDLTEGKFSFPIIHCVRAKPNDHRLLNILKQRTEDVDVKKHAVVWMKQAGSFVYTRHRLVSLKESIAEGIQLLGGHLGLSRLIEGLDRQL 306

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BLAST of mRNA_P-wetherbeei_contig20242.1.1 vs. uniprot
Match: A0A7S2G6Q7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G6Q7_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.860e-36
Identity = 64/98 (65.31%), Postives = 76/98 (77.55%), Query Frame = 1

Query:    4 YMKSKSFCEDLTEGKFSFPIIHCVRVQPADRRLLHILQQRTGDIDVKKHAVAWMRQCGSIDYTRAATRMLKQEILDDISALGGHAQLSRLIEELDNQL 297
            YMKSKSFCEDLTEGKFSFPIIH VR  P D RLL+IL+QRT D+ +K HAV +MR  GS DYTRA  R L +E+ ++I+ALGGH QL  L  ELD+Q+
Sbjct:  114 YMKSKSFCEDLTEGKFSFPIIHAVRTVPQDTRLLNILKQRTEDVRIKLHAVEFMRSVGSFDYTRATLRRLGEEVQEEITALGGHPQLMALFNELDSQI 211

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BLAST of mRNA_P-wetherbeei_contig20242.1.1 vs. uniprot
Match: A0A7S0SV02_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SV02_9STRA)

HSP 1 Score: 121 bits (304), Expect = 7.050e-32
Identity = 54/99 (54.55%), Postives = 74/99 (74.75%), Query Frame = 1

Query:    1 EYMKSKSFCEDLTEGKFSFPIIHCVRVQPADRRLLHILQQRTGDIDVKKHAVAWMRQCGSIDYTRAATRMLKQEILDDISALGGHAQLSRLIEELDNQL 297
            +Y +SKSFCEDLTEGK+SFPIIH + ++P D RL  IL+QRT DI+VKKHAV W+  CGS+DYT+     LK +++++I+ LGGH  L  +I +L N +
Sbjct:  174 QYQQSKSFCEDLTEGKYSFPIIHALTIRPLDTRLTAILRQRTEDINVKKHAVEWLISCGSLDYTKTKLNELKDQLINEINQLGGHETLCSVINDLHNTI 272

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BLAST of mRNA_P-wetherbeei_contig20242.1.1 vs. uniprot
Match: A0A8J2WNE4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WNE4_9STRA)

HSP 1 Score: 120 bits (302), Expect = 3.030e-31
Identity = 58/99 (58.59%), Postives = 76/99 (76.77%), Query Frame = 1

Query:    1 EYMKSKSFCEDLTEGKFSFPIIHCVRVQPADRRLLHILQQRTGDIDVKKHAVAWMRQCGSIDYTRAATRMLKQEILDDISALGGHAQLSRLIEELDNQL 297
            EY  SKS+CEDLTEGKFS+PI+H +R +P D RLL+IL+Q+T +IDVKKHAV +M   GS + TRAA   +K +I   I+ALGGH QL +L+E+LD Q+
Sbjct:  200 EYALSKSYCEDLTEGKFSYPILHAIRARPDDTRLLNILKQKTENIDVKKHAVEFMESVGSFEKTRAALAAIKGDIASAIAALGGHDQLVKLVEKLDAQV 298

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BLAST of mRNA_P-wetherbeei_contig20242.1.1 vs. uniprot
Match: A0A7R9WV59_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WV59_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.060e-30
Identity = 59/99 (59.60%), Postives = 76/99 (76.77%), Query Frame = 1

Query:    1 EYMKSKSFCEDLTEGKFSFPIIHCVRVQPADRRLLHILQQRTGDIDVKKHAVAWMRQCGSIDYTRAATRMLKQEILDDISALGGHAQLSRLIEELDNQL 297
            EYMKSKSFCED TEGKFSFPIIH +R  P D R+L IL++RT D+DVKK+A + M + GS++YTRA  R+LK EI++ I  LGG+  L +L++ LD QL
Sbjct:  230 EYMKSKSFCEDFTEGKFSFPIIHSIRSNPDDTRVLSILKKRTEDVDVKKYAQSLMIEHGSLEYTRAKCRVLKTEIVEQIEVLGGNEPLMKLMDLLDVQL 328

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BLAST of mRNA_P-wetherbeei_contig20242.1.1 vs. uniprot
Match: F0Y476_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y476_AURAN)

HSP 1 Score: 118 bits (296), Expect = 2.830e-30
Identity = 58/99 (58.59%), Postives = 74/99 (74.75%), Query Frame = 1

Query:    1 EYMKSKSFCEDLTEGKFSFPIIHCVRVQPADRRLLHILQQRTGDIDVKKHAVAWMRQCGSIDYTRAATRMLKQEILDDISALGGHAQLSRLIEELDNQL 297
            +YM+SKS+CEDLTEGKFSFPI+H V   P D RLL+IL+QRT + DVKKHAV  M   GS  YTR A   LK +I  +I+ LGGHA+L+ L+++LD Q+
Sbjct:  197 DYMRSKSYCEDLTEGKFSFPILHAVHAAPGDTRLLNILKQRTENPDVKKHAVEHMASLGSFAYTRTALAKLKADIGAEIALLGGHARLAALMDKLDAQI 295

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BLAST of mRNA_P-wetherbeei_contig20242.1.1 vs. uniprot
Match: A0A448ZSE5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSE5_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.180e-30
Identity = 57/99 (57.58%), Postives = 70/99 (70.71%), Query Frame = 1

Query:    1 EYMKSKSFCEDLTEGKFSFPIIHCVRVQPADRRLLHILQQRTGDIDVKKHAVAWMRQCGSIDYTRAATRMLKQEILDDISALGGHAQLSRLIEELDNQL 297
            EYMKSKSFCEDLTEGKFSFP+IHC+   P D RL  IL+QRT D DVK++A   M + GS+ YTR     LK+EI  +I  LGG+  L +L+E LD Q+
Sbjct:   37 EYMKSKSFCEDLTEGKFSFPVIHCIWSFPEDHRLSSILKQRTDDTDVKRYAQQIMVESGSLQYTREKCTSLKREITTEIERLGGNPPLMQLVELLDIQI 135

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BLAST of mRNA_P-wetherbeei_contig20242.1.1 vs. uniprot
Match: A0A1E7FFZ8_9STRA (Geranylgeranyl pyrophosphate synthase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFZ8_9STRA)

HSP 1 Score: 117 bits (293), Expect = 9.560e-30
Identity = 56/99 (56.57%), Postives = 75/99 (75.76%), Query Frame = 1

Query:    1 EYMKSKSFCEDLTEGKFSFPIIHCVRVQPADRRLLHILQQRTGDIDVKKHAVAWMRQCGSIDYTRAATRMLKQEILDDISALGGHAQLSRLIEELDNQL 297
            EYMKSK FCED++EGKFS+P+IHC+R  P D+RL  IL+QRT + DVK++A   M + GS++YTRA    LK EI+ +I +LGG+ QL +LIE LD Q+
Sbjct:  237 EYMKSKCFCEDISEGKFSYPVIHCIRFNPDDKRLSSILKQRTDNTDVKRYAQQIMVESGSMEYTRAKCTSLKGEIMAEIKSLGGNPQLVKLIEALDVQI 335

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BLAST of mRNA_P-wetherbeei_contig20242.1.1 vs. uniprot
Match: A0A3G5BBX9_HASOS (Trans-prenyltransferase 3 n=1 Tax=Haslea ostrearia TaxID=67476 RepID=A0A3G5BBX9_HASOS)

HSP 1 Score: 117 bits (293), Expect = 9.730e-30
Identity = 60/99 (60.61%), Postives = 73/99 (73.74%), Query Frame = 1

Query:    1 EYMKSKSFCEDLTEGKFSFPIIHCVRVQPADRRLLHILQQRTGDIDVKKHAVAWMRQCGSIDYTRAATRMLKQEILDDISALGGHAQLSRLIEELDNQL 297
            EYMKSKSFCEDLTEGKFS+PIIHCVR   +D RLL IL+QRT DIDVK++A   MR  GS+ +TR     LK+ I+D I A GG+  L +LI+ LD Q+
Sbjct:  210 EYMKSKSFCEDLTEGKFSYPIIHCVRKDESDSRLLSILKQRTEDIDVKRYAQRLMRDSGSLKHTREKCIELKRTIVDQIKAFGGNDPLLKLIQMLDIQV 308

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BLAST of mRNA_P-wetherbeei_contig20242.1.1 vs. uniprot
Match: A0A7S1ZPT9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZPT9_TRICV)

HSP 1 Score: 116 bits (290), Expect = 3.130e-29
Identity = 57/99 (57.58%), Postives = 73/99 (73.74%), Query Frame = 1

Query:    1 EYMKSKSFCEDLTEGKFSFPIIHCVRVQPADRRLLHILQQRTGDIDVKKHAVAWMRQCGSIDYTRAATRMLKQEILDDISALGGHAQLSRLIEELDNQL 297
            EY KSKSFCEDLTEGKFSFPIIHCVR   +D+RLL IL+QRT D DVK++A + M+Q GS+ YT      +K+EI+  +  LGG+  L +LIE+L  Q+
Sbjct:  213 EYFKSKSFCEDLTEGKFSFPIIHCVRKDKSDKRLLSILKQRTDDDDVKRYAQSLMKQAGSLHYTWEKCMRIKEEIVAQVKDLGGNPPLLKLIEKLHTQV 311

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig20242.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig20242.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LJS2_ECTSI	9.040e-39	69.70	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S2G6Q7_9STRA	1.860e-36	65.31	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S0SV02_9STRA	7.050e-32	54.55	Hypothetical protein n=1 Tax=Chromulina nebulosa T...	[more]
A0A8J2WNE4_9STRA	3.030e-31	58.59	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
A0A7R9WV59_9STRA	1.060e-30	59.60	Hypothetical protein n=2 Tax=Craspedostauros austr...	[more]
F0Y476_AURAN	2.830e-30	58.59	Uncharacterized protein n=1 Tax=Aureococcus anopha...	[more]
A0A448ZSE5_9STRA	3.180e-30	57.58	Uncharacterized protein n=1 Tax=Pseudo-nitzschia m...	[more]
A0A1E7FFZ8_9STRA	9.560e-30	56.57	Geranylgeranyl pyrophosphate synthase n=1 Tax=Frag...	[more]
A0A3G5BBX9_HASOS	9.730e-30	60.61	Trans-prenyltransferase 3 n=1 Tax=Haslea ostrearia...	[more]
A0A7S1ZPT9_TRICV	3.130e-29	57.58	Hypothetical protein n=1 Tax=Trieres chinensis Tax...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig20242	contig	P-wetherbeei_contig20242:178..890 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	2880.D8LJS2
PFAMs	JmjC,polyprenyl_synt
Model size	297
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00279
KEGG ko	ko:K00804
KEGG Reaction	R01658,R02003,R02061
KEGG Pathway	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG Module	M00367
Hectar predicted targeting category	other localisation
GOs	GO:0003674,GO:0003824,GO:0004311,GO:0004337,GO:0004659,GO:0016740,GO:0016765
Exons	2
Evalue	8.33e-38
EggNOG OGs	COG0142@1\|root,KOG0777@2759\|Eukaryota
EC	2.5.1.1,2.5.1.10,2.5.1.29
Description	geranylgeranyl diphosphate biosynthetic process
Cds size	291
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000,ko01006

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186194.4060066-CDS-P-wetherbeei_contig20242:177..235	1683186194.4060066-CDS-P-wetherbeei_contig20242:177..235	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig20242 178..235 -
1683186194.419047-CDS-P-wetherbeei_contig20242:651..884	1683186194.419047-CDS-P-wetherbeei_contig20242:651..884	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig20242 652..884 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186194.431285-UTR-P-wetherbeei_contig20242:884..890	1683186194.431285-UTR-P-wetherbeei_contig20242:884..890	Phaeothamnion wetherbeei SAG_119_79	UTR	P-wetherbeei_contig20242 885..890 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig20242.1.1	prot_P-wetherbeei_contig20242.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig20242 178..884 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig20242:178..890-
coding sequence from alignment at P-wetherbeei_contig20242:178..890-

protein sequence of mRNA_P-wetherbeei_contig20242.1.1

>prot_P-wetherbeei_contig20242.1.1 ID=prot_P-wetherbeei_contig20242.1.1|Name=mRNA_P-wetherbeei_contig20242.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
MKSKSFCEDLTEGKFSFPIIHCVRVQPADRRLLHILQQRTGDIDVKKHAV
AWMRQCGSIDYTRAATRMLKQEILDDISALGGHAQLSRLIEELDNQL

mRNA from alignment at P-wetherbeei_contig20242:178..890-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig20242.1.1 ID=mRNA_P-wetherbeei_contig20242.1.1|Name=mRNA_P-wetherbeei_contig20242.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=713bp|location=Sequence derived from alignment at P-wetherbeei_contig20242:178..890- (Phaeothamnion wetherbeei SAG_119_79)
GAGTACATGAAGAGCAAGAGCTTCTGCGAGGACCTGACCGAGGGCAAGTT
CTCCTTTCCCATCATCCACTGCGTGCGCGTGCAGCCGGCCGACCGCCGCC
TGCTGCACATCCTGCAGCAGCGGACAGGCGATATCGACGTCAAGAAGCAC
GCTGTCGCCTGGATGCGGCAGTGCGGCTCGATCGACTACACGCGCGCGGC
GACGCGCATGCTCAAGCAGGAGATCCTCGATGACATCAGGTAACGTAGTG
GGTGCGACTGCTAGTAGGAGTTGCCACCGTTTTGTTGGGTTCGTGCAAAG
TATCATGTTGTGCGGTATTTATATGCGCATCTCGAGGTTGTGAGCGTATT
TTTGTTGTTTGATGGAGCAGCAGAACAGGATGCGTGGTGGCTTTTAGCTT
CTTGCTGGTTCGCACGTGGAAACTTGCAAGGACCGTGTGCTTGCCGCTTC
AGTCTGGCGCAAAGCTTTAAGGTAGAGGCATTTCATCCCGTTCCAGTGTG
CTGACGATCGTTCCTTCCTTTCCTTTCCTTCCGCGTTTTCTCTCCTGATA
TCTGGTTGGGTCCAACCTGTCATGCCCTGTCCTTTCCACTCCCGGCCCGG
TCTGACTTTGCCACTGTCGCCGCCGCCGACTGCCGTCATTGCTGCCGTAA
TTCAGCGCGCTGGGCGGGCATGCGCAGCTGTCGCGGCTCATCGAGGAGCT
CGACAACCAACTC

Coding sequence (CDS) from alignment at P-wetherbeei_contig20242:178..890-

>mRNA_P-wetherbeei_contig20242.1.1 ID=mRNA_P-wetherbeei_contig20242.1.1|Name=mRNA_P-wetherbeei_contig20242.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig20242:178..890- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGAGCAAGAGCTTCTGCGAGGACCTGACCGAGGGCAAGTTCTCCTT
TCCCATCATCCACTGCGTGCGCGTGCAGCCGGCCGACCGCCGCCTGCTGC
ACATCCTGCAGCAGCGGACAGGCGATATCGACGTCAAGAAGCACGCTGTC
GCCTGGATGCGGCAGTGCGGCTCGATCGACTACACGCGCGCGGCGACGCG
CATGCTCAAGCAGGAGATCCTCGATGACATCAGCGCGCTGGGCGGGCATG
CGCAGCTGTCGCGGCTCATCGAGGAGCTCGACAACCAACTC