mRNA_P-wetherbeei_contig20220.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20220.1.1
Unique NamemRNA_P-wetherbeei_contig20220.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20220.1.1 vs. uniprot
Match: A0A523PCP6_9PROT (Carboxymuconolactone decarboxylase family protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523PCP6_9PROT)

HSP 1 Score: 155 bits (392), Expect = 5.180e-46
Identity = 78/127 (61.42%), Postives = 93/127 (73.23%), Query Frame = 1
Query:   13 DYRARGKQTLDVITGNTTAQALAGVAETSPDLAQWITDFAYGHVVSRPQLDLCTRELVTVASLTTQGNAPRQLAAHVNGALNAGCKPEAVVEVVTQMAVYAGFPAALNGIAVVKDVFTERNITPEQA 393
            D+ ARG  TLD+I G    + L  + + +P+L  WI DFAYG VVSRP LDL TREL TVA+LT  GNA  QL AH+NGALNAGC P  V+EV+ QMAVYAGFPA+LNGI+  ++VF ERNIT E A
Sbjct:   27 DHHARGMATLDIIVGGDVQRRLDSLTDIAPELGTWIADFAYGDVVSRPGLDLRTRELATVAALTALGNAQPQLKAHINGALNAGCTPTEVIEVIMQMAVYAGFPASLNGISAAREVFAERNITVENA 153          
BLAST of mRNA_P-wetherbeei_contig20220.1.1 vs. uniprot
Match: A0A0Q6WJ77_9BURK (Carboxymuconolactone decarboxylase n=1 Tax=Massilia sp. Root351 TaxID=1736522 RepID=A0A0Q6WJ77_9BURK)

HSP 1 Score: 145 bits (366), Expect = 3.000e-42
Identity = 69/128 (53.91%), Postives = 91/128 (71.09%), Query Frame = 1
Query:    1 STSPDYRARGKQTLDVITGNTTAQALAGVAETSPDLAQWITDFAYGHVVSRPQLDLCTRELVTVASLTTQGNAPRQLAAHVNGALNAGCKPEAVVEVVTQMAVYAGFPAALNGIAVVKDVFTERNITP 384
            S + D RA+G  TL  ITG+   Q +  + + +P+L  WI DFAYG V SRP + LCTREL T+++LT  GNA  QL  H+ GALN GCKPE ++E++TQMAVYAGFP+ALNGI+  ++VF +R I P
Sbjct:   10 SENADRRAKGNATLAKITGSEGKQVVESLRDMAPELGNWIVDFAYGDVFSRPGVALCTRELATISALTAMGNAQPQLKVHIEGALNVGCKPEEIIEIITQMAVYAGFPSALNGISAAREVFEKRGIKP 137          
BLAST of mRNA_P-wetherbeei_contig20220.1.1 vs. uniprot
Match: A0A3D5DCI7_9GAMM (Carboxymuconolactone decarboxylase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DCI7_9GAMM)

HSP 1 Score: 144 bits (362), Expect = 1.600e-41
Identity = 72/123 (58.54%), Postives = 90/123 (73.17%), Query Frame = 1
Query:   13 DYRARGKQTLDVITGNTTAQALAGVAETSPDLAQWITDFAYGHVVSRPQLDLCTRELVTVASLTTQGNAPRQLAAHVNGALNAGCKPEAVVEVVTQMAVYAGFPAALNGIAVVKDVFTERNIT 381
            D RARG  TLD+ITG  T + L  + + +P+L  WI +FAYG VVSRP LDL +REL TVA+LT  GNA  QL +H+ GALNAGCKP  ++EV+ QMAVYAGFPA+LNG++  + VF  R IT
Sbjct:   22 DNRARGMATLDIITGGDTKRRLDTLTDIAPELGVWIANFAYGDVVSRPGLDLRSRELATVAALTALGNAEPQLKSHIGGALNAGCKPTEILEVIMQMAVYAGFPASLNGLSAARTVFNNRGIT 144          
BLAST of mRNA_P-wetherbeei_contig20220.1.1 vs. uniprot
Match: A0A1N7EWE7_9PSED (4-carboxymuconolactone decarboxylase n=12 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A1N7EWE7_9PSED)

HSP 1 Score: 143 bits (361), Expect = 2.810e-41
Identity = 70/127 (55.12%), Postives = 92/127 (72.44%), Query Frame = 1
Query:    1 STSPDYR-ARGKQTLDVITGNTTAQALAGVAETSPDLAQWITDFAYGHVVSRPQLDLCTRELVTVASLTTQGNAPRQLAAHVNGALNAGCKPEAVVEVVTQMAVYAGFPAALNGIAVVKDVFTERNI 378
            +T PD R  +G +TL+ ITG T    +  +++ SP+L +WI DFAYG V SRP + LCTREL T+A+LT  GNA  QL  H+ GALN GCKPE +VE++ QMAVYAGFP+ALNGI+  ++VF +R I
Sbjct:   23 ATEPDSRRVKGVETLERITGTTGNNVVKSLSDISPELGEWIVDFAYGDVFSRPGVALCTRELATIAALTALGNAQPQLKVHIEGALNVGCKPEEIVEIIIQMAVYAGFPSALNGISAAREVFAKRGI 149          
BLAST of mRNA_P-wetherbeei_contig20220.1.1 vs. uniprot
Match: C1DH88_AZOVD (Carboxymuconolactone decarboxylase n=2 Tax=Azotobacter vinelandii TaxID=354 RepID=C1DH88_AZOVD)

HSP 1 Score: 142 bits (357), Expect = 6.380e-41
Identity = 68/127 (53.54%), Postives = 87/127 (68.50%), Query Frame = 1
Query:   13 DYRARGKQTLDVITGNTTAQALAGVAETSPDLAQWITDFAYGHVVSRPQLDLCTRELVTVASLTTQGNAPRQLAAHVNGALNAGCKPEAVVEVVTQMAVYAGFPAALNGIAVVKDVFTERNITPEQA 393
            D RARG+  L  I G      +  + + +P+LA WI DF+YG V SRP LD CTREL TVA+LT  GNA  QL  H+ GALN GC+P A+++V+ QMAVYAGFP+ALNG+A  ++VF +R I P  A
Sbjct:    9 DRRARGEAALTEIAGGAGRNVIDSLRDIAPELADWILDFSYGDVFSRPGLDYCTRELATVAALTAMGNAQPQLKVHIGGALNVGCEPAAIIDVILQMAVYAGFPSALNGVAAAREVFDDRGIDPRAA 135          
BLAST of mRNA_P-wetherbeei_contig20220.1.1 vs. uniprot
Match: UPI001F11A879 (carboxymuconolactone decarboxylase family protein n=1 Tax=Pseudomonas viridiflava TaxID=33069 RepID=UPI001F11A879)

HSP 1 Score: 141 bits (356), Expect = 1.610e-40
Identity = 71/135 (52.59%), Postives = 93/135 (68.89%), Query Frame = 1
Query:    1 STSPDYRA-RGKQTLDVITGNTTAQALAGVAETSPDLAQWITDFAYGHVVSRPQLDLCTRELVTVASLTTQGNAPRQLAAHVNGALNAGCKPEAVVEVVTQMAVYAGFPAALNGIAVVKDVFTERNITPEQAKQQ 402
            ++ PD R  +G +TL  ITG      +  +++ SP+L  WI DFAYG V SRP L LCTREL T+++LT  GNA  QL  H+ GALN GCKPE +VEV+ QMAVYAGFP+ALNGI+  ++VFT+R I    A+ +
Sbjct:   23 TSEPDARREKGSETLQKITGTAGITVVDSLSDISPELGDWIVDFAYGDVFSRPGLALCTRELTTISALTALGNAQPQLKVHIEGALNVGCKPEEIVEVIIQMAVYAGFPSALNGISAAREVFTKRGIKLTAARPE 157          
BLAST of mRNA_P-wetherbeei_contig20220.1.1 vs. uniprot
Match: A0A2R7SI68_9PSED (Carboxymuconolactone decarboxylase n=1 Tax=Pseudomonas sp. HMWF010 TaxID=2056847 RepID=A0A2R7SI68_9PSED)

HSP 1 Score: 140 bits (352), Expect = 4.540e-40
Identity = 70/135 (51.85%), Postives = 94/135 (69.63%), Query Frame = 1
Query:    1 STSPDYRA-RGKQTLDVITGNTTAQALAGVAETSPDLAQWITDFAYGHVVSRPQLDLCTRELVTVASLTTQGNAPRQLAAHVNGALNAGCKPEAVVEVVTQMAVYAGFPAALNGIAVVKDVFTERNITPEQAKQQ 402
            +T PD R  +G +TL+ ITG+T    +  +++ SP+L  WI DFAYG V SR  + LCTREL T+++LT  GNA  QL  H+ GALN GCKPE +VE++ QMA+YAGFP+ALNGI+  ++VFT+R I    A  Q
Sbjct:   11 ATVPDSRREKGIETLERITGDTGKSVVNSLSDISPELGDWIVDFAYGDVFSRSGVALCTRELATISALTALGNAQPQLKVHIEGALNVGCKPEEIVEIIIQMAIYAGFPSALNGISAAREVFTKRGIKLSSAPPQ 145          
BLAST of mRNA_P-wetherbeei_contig20220.1.1 vs. uniprot
Match: A0A1G7NGT4_9PSED (4-carboxymuconolactone decarboxylase n=4 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A1G7NGT4_9PSED)

HSP 1 Score: 140 bits (352), Expect = 6.320e-40
Identity = 69/127 (54.33%), Postives = 92/127 (72.44%), Query Frame = 1
Query:    1 STSPDYR-ARGKQTLDVITGNTTAQALAGVAETSPDLAQWITDFAYGHVVSRPQLDLCTRELVTVASLTTQGNAPRQLAAHVNGALNAGCKPEAVVEVVTQMAVYAGFPAALNGIAVVKDVFTERNI 378
            +T PD R A+G +TL+ ITG T    +  +++ SP+L +WI DFAYG V SR  + LCTREL T+++LT  GNA  QL  H+ GALN GCKPE +VE++ QMAVYAGFP+ALNGI+  ++VF +R I
Sbjct:   23 ATEPDSRRAKGTETLEKITGATGNTVVNSLSDISPELGEWIVDFAYGDVFSRSGVALCTRELATISALTALGNAQPQLKVHIEGALNVGCKPEEIVEIIIQMAVYAGFPSALNGISAAREVFAKRGI 149          
BLAST of mRNA_P-wetherbeei_contig20220.1.1 vs. uniprot
Match: UPI0010328EC8 (carboxymuconolactone decarboxylase family protein n=1 Tax=unclassified Pseudomonas TaxID=196821 RepID=UPI0010328EC8)

HSP 1 Score: 139 bits (350), Expect = 1.310e-39
Identity = 69/127 (54.33%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    1 STSPDYR-ARGKQTLDVITGNTTAQALAGVAETSPDLAQWITDFAYGHVVSRPQLDLCTRELVTVASLTTQGNAPRQLAAHVNGALNAGCKPEAVVEVVTQMAVYAGFPAALNGIAVVKDVFTERNI 378
            +T PD R  +G +TL+ ITG      +  + + SP+L  WI DFAYG V SRP L LCTREL T+++LT  GNA  QL  H+ GALN GCKPE +VE++ QMAVYAGFP+ALNGI+  ++VF +R I
Sbjct:   23 ATEPDSRRVKGLETLEKITGAAGNTVVNSLGDISPELGDWIVDFAYGDVFSRPGLALCTRELATISALTALGNAQPQLKVHIEGALNVGCKPEEIVEIIIQMAVYAGFPSALNGISAAREVFAKRGI 149          
BLAST of mRNA_P-wetherbeei_contig20220.1.1 vs. uniprot
Match: UPI000A73B6FA (carboxymuconolactone decarboxylase family protein n=1 Tax=Pseudomonas sp. Ant30-3 TaxID=1488328 RepID=UPI000A73B6FA)

HSP 1 Score: 139 bits (350), Expect = 1.310e-39
Identity = 69/132 (52.27%), Postives = 91/132 (68.94%), Query Frame = 1
Query:    7 SPDYRARGKQTLDVITGNTTAQALAGVAETSPDLAQWITDFAYGHVVSRPQLDLCTRELVTVASLTTQGNAPRQLAAHVNGALNAGCKPEAVVEVVTQMAVYAGFPAALNGIAVVKDVFTERNITPEQAKQQ 402
            S   R +G  TL+ ITG T    +  +++ SP+L +WI DFAYG V SRP + LC REL T+++LT  GNA  QL  H+ GALN GCKPE +VE++ QMAVYAGFP+ALNGI+  ++VF++R IT   A  Q
Sbjct:   26 SDSRREKGIVTLERITGATGNSVVESLSDISPELGEWIVDFAYGDVFSRPGVALCPRELATISALTALGNAQPQLKVHIEGALNVGCKPEEIVEIIIQMAVYAGFPSALNGISAAREVFSKRGITMGSAPPQ 157          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20220.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A523PCP6_9PROT5.180e-4661.42Carboxymuconolactone decarboxylase family protein ... [more]
A0A0Q6WJ77_9BURK3.000e-4253.91Carboxymuconolactone decarboxylase n=1 Tax=Massili... [more]
A0A3D5DCI7_9GAMM1.600e-4158.54Carboxymuconolactone decarboxylase n=1 Tax=Gammapr... [more]
A0A1N7EWE7_9PSED2.810e-4155.124-carboxymuconolactone decarboxylase n=12 Tax=Pseu... [more]
C1DH88_AZOVD6.380e-4153.54Carboxymuconolactone decarboxylase n=2 Tax=Azotoba... [more]
UPI001F11A8791.610e-4052.59carboxymuconolactone decarboxylase family protein ... [more]
A0A2R7SI68_9PSED4.540e-4051.85Carboxymuconolactone decarboxylase n=1 Tax=Pseudom... [more]
A0A1G7NGT4_9PSED6.320e-4054.334-carboxymuconolactone decarboxylase n=4 Tax=Pseud... [more]
UPI0010328EC81.310e-3954.33carboxymuconolactone decarboxylase family protein ... [more]
UPI000A73B6FA1.310e-3952.27carboxymuconolactone decarboxylase family protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20220contigP-wetherbeei_contig20220:2..406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog322710.Avin_02340
PFAMsCMD
Model size405
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00938
KEGG koko:K01607
KEGG ReactionR03470
KEGG Pathwayko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.05e-41
EggNOG OGsCOG0599@1|root,COG0599@2|Bacteria,1RH7V@1224|Proteobacteria,1S6K3@1236|Gammaproteobacteria
EC4.1.1.44
Descriptiondecarboxylase
Cds size405
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186193.8781176-CDS-P-wetherbeei_contig20220:1..4061683186193.8781176-CDS-P-wetherbeei_contig20220:1..406Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20220 2..406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20220.1.1prot_P-wetherbeei_contig20220.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20220 2..406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20220.1.1

>prot_P-wetherbeei_contig20220.1.1 ID=prot_P-wetherbeei_contig20220.1.1|Name=mRNA_P-wetherbeei_contig20220.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
STSPDYRARGKQTLDVITGNTTAQALAGVAETSPDLAQWITDFAYGHVVS
RPQLDLCTRELVTVASLTTQGNAPRQLAAHVNGALNAGCKPEAVVEVVTQ
MAVYAGFPAALNGIAVVKDVFTERNITPEQAKQQ*
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mRNA from alignment at P-wetherbeei_contig20220:2..406+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20220.1.1 ID=mRNA_P-wetherbeei_contig20220.1.1|Name=mRNA_P-wetherbeei_contig20220.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig20220:2..406+ (Phaeothamnion wetherbeei SAG_119_79)
AGCACCTCACCCGATTACCGCGCGCGCGGCAAACAGACGCTGGATGTCAT CACTGGCAATACCACCGCCCAGGCGCTGGCCGGTGTAGCCGAAACCTCAC CCGACCTCGCGCAATGGATTACCGACTTCGCTTACGGCCACGTAGTATCG CGTCCACAACTCGATCTGTGTACGCGTGAACTGGTCACGGTTGCCTCGCT GACCACCCAGGGCAATGCCCCCCGCCAGCTCGCCGCCCATGTCAATGGCG CACTGAATGCGGGTTGCAAGCCGGAGGCGGTGGTGGAAGTGGTGACGCAA ATGGCGGTCTATGCCGGCTTCCCGGCGGCGCTGAATGGCATCGCCGTGGT GAAGGATGTGTTCACCGAGCGCAACATCACGCCGGAGCAGGCGAAACAAC AGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20220:2..406+

>mRNA_P-wetherbeei_contig20220.1.1 ID=mRNA_P-wetherbeei_contig20220.1.1|Name=mRNA_P-wetherbeei_contig20220.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig20220:2..406+ (Phaeothamnion wetherbeei SAG_119_79)
AGCACCTCACCCGATTACCGCGCGCGCGGCAAACAGACGCTGGATGTCAT
CACTGGCAATACCACCGCCCAGGCGCTGGCCGGTGTAGCCGAAACCTCAC
CCGACCTCGCGCAATGGATTACCGACTTCGCTTACGGCCACGTAGTATCG
CGTCCACAACTCGATCTGTGTACGCGTGAACTGGTCACGGTTGCCTCGCT
GACCACCCAGGGCAATGCCCCCCGCCAGCTCGCCGCCCATGTCAATGGCG
CACTGAATGCGGGTTGCAAGCCGGAGGCGGTGGTGGAAGTGGTGACGCAA
ATGGCGGTCTATGCCGGCTTCCCGGCGGCGCTGAATGGCATCGCCGTGGT
GAAGGATGTGTTCACCGAGCGCAACATCACGCCGGAGCAGGCGAAACAAC
AGTAG
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