mRNA_P-wetherbeei_contig20211.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20211.1.1
Unique NamemRNA_P-wetherbeei_contig20211.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20211.1.1 vs. uniprot
Match: A0A838SK75_9ACTN (Uncharacterized protein n=1 Tax=Acidothermales bacterium TaxID=2740546 RepID=A0A838SK75_9ACTN)

HSP 1 Score: 64.7 bits (156), Expect = 2.770e-11
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:  106 IARVNATARVQAEKAHAVGYVGSQGMQAVALVSQQESQLAQLVPLATGRLQAIADMTALGIAEVVATTVRRL 321
            +A   + A  +A     + YVG + MQ +AL++Q E QLA  VPLA  RLQAI DMTALG+A+VVA  VR+L
Sbjct:   32 VAATESVAEKEAAVVDGIAYVGQRAMQDIALLTQMEQQLATAVPLAASRLQAIGDMTALGMADVVAGAVRKL 103
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BLAST of mRNA_P-wetherbeei_contig20211.1.1 vs. uniprot
Match: A0A1C4FKA5_9ACTN (Uncharacterized protein n=1 Tax=Gordonia sp. v-85 TaxID=1761786 RepID=A0A1C4FKA5_9ACTN)

HSP 1 Score: 59.3 bits (142), Expect = 4.210e-9
Identity = 41/106 (38.68%), Postives = 59/106 (55.66%), Query Frame = 1 
Query:    4 VSGALSPFGGGVERRADRLEDRRTNALERSVRGDIARVNATARVQAEKAHAVGYVGSQGMQAVALVSQQESQLAQLVPLATGRLQAIADMTALGIAEVVATTVRRL 321
            +  A  P    +  R  R   R    LE  V  ++AR++ATA VQ E+  A+  + +  + A A +SQ E  LAQL P A+GRL AIAD+TA+  +E+V  + R L
Sbjct:    4 IQRAWRPSSDYLVPREARETRRELQRLEGRVARELARIDATAEVQQERVRALNSISTSALVATAQLSQAEVALAQLTPHASGRLAAIADLTAVLTSEIVVDSAREL 109
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BLAST of mRNA_P-wetherbeei_contig20211.1.1 vs. uniprot
Match: L7L0T1_9ACTN (Uncharacterized protein n=3 Tax=Gordonia TaxID=2053 RepID=L7L0T1_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 1.090e-6
Identity = 36/79 (45.57%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:   79 ALERSVRGDIARVNATARVQAEKAHAVGYVGSQGMQAVALVSQQESQLAQLVPLATGRLQAIADMTALGIAEVVATTVR 315
            A+  S     ARV A   VQ  +  AV   G+  MQ VALVSQ + QLA   P A+G L  I  MTA+GI ++VA T R
Sbjct:   34 AINHSTEVSTARVAAAGEVQQARIDAVARAGAYAMQQVALVSQMQQQLALAAPAASGDLDFIKTMTAVGIGQIVADTGR 112
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20211.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A838SK75_9ACTN2.770e-1151.39Uncharacterized protein n=1 Tax=Acidothermales bac... [more]
A0A1C4FKA5_9ACTN4.210e-938.68Uncharacterized protein n=1 Tax=Gordonia sp. v-85 ... [more]
L7L0T1_9ACTN1.090e-645.57Uncharacterized protein n=3 Tax=Gordonia TaxID=205... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20211contigP-wetherbeei_contig20211:750..1076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog526226.Gbro_1441
Model size327
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.36e-06
EggNOG OGs2B3IA@1|root,31W7E@2|Bacteria,2HXMA@201174|Actinobacteria,4GGFF@85026|Gordoniaceae
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186193.616876-CDS-P-wetherbeei_contig20211:749..10761683186193.616876-CDS-P-wetherbeei_contig20211:749..1076Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20211 750..1076 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20211.1.1prot_P-wetherbeei_contig20211.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20211 750..1076 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20211.1.1

>prot_P-wetherbeei_contig20211.1.1 ID=prot_P-wetherbeei_contig20211.1.1|Name=mRNA_P-wetherbeei_contig20211.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
LVSGALSPFGGGVERRADRLEDRRTNALERSVRGDIARVNATARVQAEKA
HAVGYVGSQGMQAVALVSQQESQLAQLVPLATGRLQAIADMTALGIAEVV
ATTVRRLA*
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mRNA from alignment at P-wetherbeei_contig20211:750..1076-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20211.1.1 ID=mRNA_P-wetherbeei_contig20211.1.1|Name=mRNA_P-wetherbeei_contig20211.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig20211:750..1076- (Phaeothamnion wetherbeei SAG_119_79)
CTCGTGAGCGGCGCGCTGAGCCCATTCGGCGGTGGCGTCGAGCGCCGCGC
CGATCGCCTTGAGGATCGCAGAACTAACGCCCTGGAGCGCTCGGTGCGAG
GCGATATCGCACGCGTGAACGCCACGGCTCGCGTTCAGGCCGAGAAGGCC
CACGCGGTCGGGTACGTCGGCTCGCAGGGCATGCAGGCGGTGGCGCTGGT
GTCACAGCAGGAGTCGCAGCTGGCACAGCTCGTACCGCTCGCGACCGGGC
GGCTGCAGGCCATCGCCGACATGACGGCCCTCGGTATCGCCGAGGTCGTC
GCCACCACGGTGAGGAGGCTCGCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20211:750..1076-

>mRNA_P-wetherbeei_contig20211.1.1 ID=mRNA_P-wetherbeei_contig20211.1.1|Name=mRNA_P-wetherbeei_contig20211.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig20211:750..1076- (Phaeothamnion wetherbeei SAG_119_79)
CTCGTGAGCGGCGCGCTGAGCCCATTCGGCGGTGGCGTCGAGCGCCGCGC
CGATCGCCTTGAGGATCGCAGAACTAACGCCCTGGAGCGCTCGGTGCGAG
GCGATATCGCACGCGTGAACGCCACGGCTCGCGTTCAGGCCGAGAAGGCC
CACGCGGTCGGGTACGTCGGCTCGCAGGGCATGCAGGCGGTGGCGCTGGT
GTCACAGCAGGAGTCGCAGCTGGCACAGCTCGTACCGCTCGCGACCGGGC
GGCTGCAGGCCATCGCCGACATGACGGCCCTCGGTATCGCCGAGGTCGTC
GCCACCACGGTGAGGAGGCTCGCATGA
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