mRNA_P-wetherbeei_contig2021.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2021.5.1
Unique NamemRNA_P-wetherbeei_contig2021.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2021.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2021contigP-wetherbeei_contig2021:5112..5828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size717
Hectar predicted targeting categoryother localisation
Exons1
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186193.5686028-UTR-P-wetherbeei_contig2021:5111..52681683186193.5686028-UTR-P-wetherbeei_contig2021:5111..5268Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2021 5112..5268 -
1683186193.5869281-UTR-P-wetherbeei_contig2021:5673..58281683186193.5869281-UTR-P-wetherbeei_contig2021:5673..5828Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2021 5674..5828 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186193.577742-CDS-P-wetherbeei_contig2021:5268..56731683186193.577742-CDS-P-wetherbeei_contig2021:5268..5673Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2021 5269..5673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2021.5.1prot_P-wetherbeei_contig2021.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2021 5269..5673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2021.5.1

>prot_P-wetherbeei_contig2021.5.1 ID=prot_P-wetherbeei_contig2021.5.1|Name=mRNA_P-wetherbeei_contig2021.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
MVGSGCRPAAAQGAGTSFGRQKDSPDKAKAGKATYGMKQRFSVKLENSIP
WQVEEVLRWAVWRQRDLSVAAAKEEVLDRHVLREDVCQERAEAGEAVANL
LPFGCWGLYPAYERVGRTLRYKRARWSAKRCFGL*
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mRNA from alignment at P-wetherbeei_contig2021:5112..5828-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2021.5.1 ID=mRNA_P-wetherbeei_contig2021.5.1|Name=mRNA_P-wetherbeei_contig2021.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=717bp|location=Sequence derived from alignment at P-wetherbeei_contig2021:5112..5828- (Phaeothamnion wetherbeei SAG_119_79)
GCAGTTTGTGCCTCCTTGTGTGCAGGATGAAACCTATACGTATTCAGTGC
AAACATCCGACAATTTTTTTGTTTTTGTGACCAACAGCTCCTGGTTGCTG
GTGAAAATTCTTTGAGATAGAACTGGCTAATCCCGTTCGCAATGCATGGA
GGTTCATGGTCGGCTCGGGCTGCAGACCGGCGGCTGCTCAAGGTGCCGGC
ACTTCATTCGGTCGGCAGAAGGACAGCCCAGACAAGGCGAAGGCGGGAAA
GGCTACATATGGAATGAAGCAGCGGTTCTCAGTGAAGCTAGAAAACTCCA
TTCCATGGCAGGTGGAAGAGGTATTAAGATGGGCGGTATGGCGGCAACGG
GATCTGTCGGTAGCGGCGGCTAAGGAGGAAGTGCTTGATCGGCACGTTTT
GAGAGAGGACGTTTGTCAAGAGCGTGCGGAGGCTGGTGAGGCTGTTGCGA
ACCTGCTGCCTTTCGGTTGCTGGGGATTGTACCCTGCTTACGAGCGCGTG
GGTCGTACCCTACGTTACAAACGAGCACGATGGTCGGCAAAGCGCTGTTT
TGGTCTTTGATTCGGCGCCTTTTTGGTGGGGAAACCGTCGCATCAGGGTC
ATTCGCATCGAGCGGGGCCAGTCAAGGCGCCAGTACCGTGACTTGACTTG
AAGGCATGAAACCAGGAAAGTCGATGATGTGGAGTAAAACTTCCTCTTTC
AGAAAGGAAAAAGAGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2021:5112..5828-

>mRNA_P-wetherbeei_contig2021.5.1 ID=mRNA_P-wetherbeei_contig2021.5.1|Name=mRNA_P-wetherbeei_contig2021.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig2021:5112..5828- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGGCTCGGGCTGCAGACCGGCGGCTGCTCAAGGTGCCGGCACTTC
ATTCGGTCGGCAGAAGGACAGCCCAGACAAGGCGAAGGCGGGAAAGGCTA
CATATGGAATGAAGCAGCGGTTCTCAGTGAAGCTAGAAAACTCCATTCCA
TGGCAGGTGGAAGAGGTATTAAGATGGGCGGTATGGCGGCAACGGGATCT
GTCGGTAGCGGCGGCTAAGGAGGAAGTGCTTGATCGGCACGTTTTGAGAG
AGGACGTTTGTCAAGAGCGTGCGGAGGCTGGTGAGGCTGTTGCGAACCTG
CTGCCTTTCGGTTGCTGGGGATTGTACCCTGCTTACGAGCGCGTGGGTCG
TACCCTACGTTACAAACGAGCACGATGGTCGGCAAAGCGCTGTTTTGGTC
TTTGA
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