mRNA_P-wetherbeei_contig20199.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Match: UPI001390035B (metalloregulator ArsR/SmtB family transcription factor n=3 Tax=Gemmata TaxID=113 RepID=UPI001390035B) HSP 1 Score: 94.4 bits (233), Expect = 7.820e-23 Identity = 52/98 (53.06%), Postives = 68/98 (69.39%), Query Frame = 1
Query: 10 EQSHMEAVARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVSKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELVTEKLRADAEHQV 303
+++ +EAV+RLF VL++ RLAILQ L+ P AV +LVD+L Q +SK L +LY AGLL RER V YSI E M+F+L ELV KLR DAE ++
Sbjct: 7 DRNALEAVSRLFAVLAEPTRLAILQCLKSGPKAVSELVDELGAKQANISKQLGILYAAGLLSRERDGNLVRYSIAESMIFELCELVCGKLRRDAERRL 104
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Match: UPI001D06D710 (metalloregulator ArsR/SmtB family transcription factor n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=UPI001D06D710) HSP 1 Score: 90.9 bits (224), Expect = 1.330e-20 Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = 1
Query: 22 MEAVARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVSKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELVTEKLRADAEHQV 303
+EAVARLF VL++ RL +LQ L+ P +V +LV++L+ Q VSK L +L+ AGL+ R R + YSI EPM+F+L ELV +KLR DAE Q+
Sbjct: 88 LEAVARLFGVLAEPTRLGLLQDLKAGPRSVSELVERLQAKQANVSKQLGILHAAGLVARARDGNVIRYSIAEPMIFELCELVCDKLRRDAERQL 181
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Match: A0A142XD56_9BACT (Putative HTH-type transcriptional regulator n=1 Tax=Gemmata sp. SH-PL17 TaxID=1630693 RepID=A0A142XD56_9BACT) HSP 1 Score: 88.2 bits (217), Expect = 1.460e-20 Identity = 49/91 (53.85%), Postives = 62/91 (68.13%), Query Frame = 1
Query: 31 VARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVSKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELVTEKLRADAEHQV 303
++RLF VL++ RLAILQ L+ P AV +LVD+L Q +SK L +LY AGLL RER V YSI E M+F+L ELV KLR DAE ++
Sbjct: 1 MSRLFAVLAEPTRLAILQCLKSGPKAVSELVDELGAKQANISKQLGILYAAGLLSRERDGNLVRYSIAESMIFELCELVCGKLRRDAERRL 91
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Match: A0A2E0QZV8_9BACT (Transcriptional regulator n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E0QZV8_9BACT) HSP 1 Score: 88.6 bits (218), Expect = 1.820e-20 Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 1
Query: 22 MEAVARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVSKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELVTEKLRADAEHQ 300
+E +A LF+V ++ RLAILQ LR PH+V ++V+ L SQ VSK L +LY+A LL RE+R V YS+ EP+V++L ELV +KL A+ +
Sbjct: 24 LEKIAALFKVFAEPTRLAILQLLRRGPHSVNEIVEALPTSQANVSKQLRLLYDADLLSREQRGNQVIYSVHEPLVYELCELVCDKLNRQAKSE 116
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Match: A0A2E2B2L1_9BACT (Transcriptional regulator n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E2B2L1_9BACT) HSP 1 Score: 88.2 bits (217), Expect = 2.190e-20 Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 1
Query: 22 MEAVARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVSKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELVTEKLRADAEHQVR 306
++ VAR+F+VL D RLAIL+ L +QP V ++V+ L+ Q +SKHL +L++AGL+ RER V Y+I EPMVF L +LV KL+ DA Q R
Sbjct: 13 IKTVARMFKVLGDPTRLAILKMLFDQPLTVTEMVEALEAKQANISKHLGMLHDAGLVSRERNGNQVIYAICEPMVFDLCQLVCCKLQKDAVQQAR 107
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Match: A0A7V2D0E5_9BACT (ArsR family transcriptional regulator n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A7V2D0E5_9BACT) HSP 1 Score: 85.1 bits (209), Expect = 5.430e-19 Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 1
Query: 22 MEAVARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVSKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELVTEKLRADAEHQVRLF 312
+ AVARLF VL++ +RLA+LQ+L+ P +V LV+ + Q VSKHLAVL L+ RER+ + VFYSI +PM+F L LV K+ DA LF
Sbjct: 14 LRAVARLFGVLAEPSRLALLQTLQSGPRSVTDLVESTGMKQANVSKHLAVLLHHRLVERERQGSTVFYSIADPMIFPLCRLVCGKMERDAAAAAALF 110
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Match: K9U4N0_CHRTP (Transcriptional regulator, ArsR family n=4 Tax=Cyanobacteria TaxID=1117 RepID=K9U4N0_CHRTP) HSP 1 Score: 81.6 bits (200), Expect = 8.180e-18 Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 1
Query: 22 MEAVARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVSKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELVTEKLRADAEHQVRLF 312
M+ VA F +LS+ RL +L LR+ V +LVD + SQ VSKHL ++++AG+L R T +Y + + M+F+LW LV +L EHQ R F
Sbjct: 12 MQQVAEYFSLLSEPMRLRLLSLLRDGEKCVQELVDATQTSQANVSKHLKIMWQAGILSRRSEGTSAYYRVEDDMIFQLWNLVCHRLATRVEHQARQF 108
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Match: E8V633_TERSS (Regulatory protein ArsR n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) TaxID=401053 RepID=E8V633_TERSS) HSP 1 Score: 80.9 bits (198), Expect = 1.600e-17 Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 1
Query: 1 SMPEQSHMEAVARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVSKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELV----TEKLRADAE 294
SM + +E VAR F L + RL ILQ L +VG+LV L+ +QP VSKHL +L +AGL+ R R T +FY+I +PMVFKL LV T+K R + E
Sbjct: 4 SMMSEKMLELVARRFRTLGEPFRLRILQELEAGEKSVGELVAALEGNQPNVSKHLQILSDAGLIARRREGTSIFYTISDPMVFKLCALVCSSETQKSRREFE 105
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Match: A0A3M1SH54_9BACT (ArsR family transcriptional regulator n=2 Tax=Acidobacteria TaxID=57723 RepID=A0A3M1SH54_9BACT) HSP 1 Score: 80.1 bits (196), Expect = 2.740e-17 Identity = 42/98 (42.86%), Postives = 64/98 (65.31%), Query Frame = 1
Query: 25 EAVARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVSKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELVTEKLRADAEHQVRLFNS 318
E +A F++LS+ RL I+ SL+E+ +V QL +++K SQP VSKHL +L +AGL+HR ++ V+YSI + VF L E V L ++Q ++F S
Sbjct: 11 EIIALRFKILSEPLRLRIIHSLQEKEKSVNQLREEVKTSQPNVSKHLRILQDAGLVHRRQQGNVVYYSIADESVFDLCETVCNSLEKRFKNQAKIFAS 108
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Match: A0A2T2RHU2_9CYAN (Transcriptional regulator n=1 Tax=Cyanobacteria bacterium SW_9_44_58 TaxID=1919144 RepID=A0A2T2RHU2_9CYAN) HSP 1 Score: 79.0 bits (193), Expect = 9.830e-17 Identity = 40/95 (42.11%), Postives = 63/95 (66.32%), Query Frame = 1
Query: 31 VARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVSKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELVTEKLRADAEHQVRLFN 315
VA F+VLS+V+RL IL +LRE+P ++ + L Q +SKHL VL +AG+L RE++ +YSI++PM+F+L ELV + + + + + FN
Sbjct: 15 VADYFKVLSEVSRLQILNALREKPMNGKEIAEATGLGQANLSKHLKVLTQAGILKREQKGVSAYYSIKDPMIFELCELVCDTISNEFQERAESFN 109 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig20199.1.1 >prot_P-wetherbeei_contig20199.1.1 ID=prot_P-wetherbeei_contig20199.1.1|Name=mRNA_P-wetherbeei_contig20199.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=107bp MPEQSHMEAVARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVback to top mRNA from alignment at P-wetherbeei_contig20199:490..813+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig20199.1.1 ID=mRNA_P-wetherbeei_contig20199.1.1|Name=mRNA_P-wetherbeei_contig20199.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig20199:490..813+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig20199:490..813+ >mRNA_P-wetherbeei_contig20199.1.1 ID=mRNA_P-wetherbeei_contig20199.1.1|Name=mRNA_P-wetherbeei_contig20199.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig20199:490..813+ (Phaeothamnion wetherbeei SAG_119_79)back to top |