mRNA_P-wetherbeei_contig20199.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20199.1.1
Unique NamemRNA_P-wetherbeei_contig20199.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Match: UPI001390035B (metalloregulator ArsR/SmtB family transcription factor n=3 Tax=Gemmata TaxID=113 RepID=UPI001390035B)

HSP 1 Score: 94.4 bits (233), Expect = 7.820e-23
Identity = 52/98 (53.06%), Postives = 68/98 (69.39%), Query Frame = 1
Query:   10 EQSHMEAVARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVSKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELVTEKLRADAEHQV 303
            +++ +EAV+RLF VL++  RLAILQ L+  P AV +LVD+L   Q  +SK L +LY AGLL RER    V YSI E M+F+L ELV  KLR DAE ++
Sbjct:    7 DRNALEAVSRLFAVLAEPTRLAILQCLKSGPKAVSELVDELGAKQANISKQLGILYAAGLLSRERDGNLVRYSIAESMIFELCELVCGKLRRDAERRL 104          
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Match: UPI001D06D710 (metalloregulator ArsR/SmtB family transcription factor n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=UPI001D06D710)

HSP 1 Score: 90.9 bits (224), Expect = 1.330e-20
Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = 1
Query:   22 MEAVARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVSKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELVTEKLRADAEHQV 303
            +EAVARLF VL++  RL +LQ L+  P +V +LV++L+  Q  VSK L +L+ AGL+ R R    + YSI EPM+F+L ELV +KLR DAE Q+
Sbjct:   88 LEAVARLFGVLAEPTRLGLLQDLKAGPRSVSELVERLQAKQANVSKQLGILHAAGLVARARDGNVIRYSIAEPMIFELCELVCDKLRRDAERQL 181          
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Match: A0A142XD56_9BACT (Putative HTH-type transcriptional regulator n=1 Tax=Gemmata sp. SH-PL17 TaxID=1630693 RepID=A0A142XD56_9BACT)

HSP 1 Score: 88.2 bits (217), Expect = 1.460e-20
Identity = 49/91 (53.85%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   31 VARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVSKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELVTEKLRADAEHQV 303
            ++RLF VL++  RLAILQ L+  P AV +LVD+L   Q  +SK L +LY AGLL RER    V YSI E M+F+L ELV  KLR DAE ++
Sbjct:    1 MSRLFAVLAEPTRLAILQCLKSGPKAVSELVDELGAKQANISKQLGILYAAGLLSRERDGNLVRYSIAESMIFELCELVCGKLRRDAERRL 91          
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Match: A0A2E0QZV8_9BACT (Transcriptional regulator n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E0QZV8_9BACT)

HSP 1 Score: 88.6 bits (218), Expect = 1.820e-20
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 1
Query:   22 MEAVARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVSKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELVTEKLRADAEHQ 300
            +E +A LF+V ++  RLAILQ LR  PH+V ++V+ L  SQ  VSK L +LY+A LL RE+R   V YS+ EP+V++L ELV +KL   A+ +
Sbjct:   24 LEKIAALFKVFAEPTRLAILQLLRRGPHSVNEIVEALPTSQANVSKQLRLLYDADLLSREQRGNQVIYSVHEPLVYELCELVCDKLNRQAKSE 116          
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Match: A0A2E2B2L1_9BACT (Transcriptional regulator n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E2B2L1_9BACT)

HSP 1 Score: 88.2 bits (217), Expect = 2.190e-20
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 1
Query:   22 MEAVARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVSKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELVTEKLRADAEHQVR 306
            ++ VAR+F+VL D  RLAIL+ L +QP  V ++V+ L+  Q  +SKHL +L++AGL+ RER    V Y+I EPMVF L +LV  KL+ DA  Q R
Sbjct:   13 IKTVARMFKVLGDPTRLAILKMLFDQPLTVTEMVEALEAKQANISKHLGMLHDAGLVSRERNGNQVIYAICEPMVFDLCQLVCCKLQKDAVQQAR 107          
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Match: A0A7V2D0E5_9BACT (ArsR family transcriptional regulator n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A7V2D0E5_9BACT)

HSP 1 Score: 85.1 bits (209), Expect = 5.430e-19
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 1
Query:   22 MEAVARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVSKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELVTEKLRADAEHQVRLF 312
            + AVARLF VL++ +RLA+LQ+L+  P +V  LV+   + Q  VSKHLAVL    L+ RER+ + VFYSI +PM+F L  LV  K+  DA     LF
Sbjct:   14 LRAVARLFGVLAEPSRLALLQTLQSGPRSVTDLVESTGMKQANVSKHLAVLLHHRLVERERQGSTVFYSIADPMIFPLCRLVCGKMERDAAAAAALF 110          
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Match: K9U4N0_CHRTP (Transcriptional regulator, ArsR family n=4 Tax=Cyanobacteria TaxID=1117 RepID=K9U4N0_CHRTP)

HSP 1 Score: 81.6 bits (200), Expect = 8.180e-18
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   22 MEAVARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVSKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELVTEKLRADAEHQVRLF 312
            M+ VA  F +LS+  RL +L  LR+    V +LVD  + SQ  VSKHL ++++AG+L R    T  +Y + + M+F+LW LV  +L    EHQ R F
Sbjct:   12 MQQVAEYFSLLSEPMRLRLLSLLRDGEKCVQELVDATQTSQANVSKHLKIMWQAGILSRRSEGTSAYYRVEDDMIFQLWNLVCHRLATRVEHQARQF 108          
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Match: E8V633_TERSS (Regulatory protein ArsR n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) TaxID=401053 RepID=E8V633_TERSS)

HSP 1 Score: 80.9 bits (198), Expect = 1.600e-17
Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 1
Query:    1 SMPEQSHMEAVARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVSKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELV----TEKLRADAE 294
            SM  +  +E VAR F  L +  RL ILQ L     +VG+LV  L+ +QP VSKHL +L +AGL+ R R  T +FY+I +PMVFKL  LV    T+K R + E
Sbjct:    4 SMMSEKMLELVARRFRTLGEPFRLRILQELEAGEKSVGELVAALEGNQPNVSKHLQILSDAGLIARRREGTSIFYTISDPMVFKLCALVCSSETQKSRREFE 105          
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Match: A0A3M1SH54_9BACT (ArsR family transcriptional regulator n=2 Tax=Acidobacteria TaxID=57723 RepID=A0A3M1SH54_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 2.740e-17
Identity = 42/98 (42.86%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   25 EAVARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVSKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELVTEKLRADAEHQVRLFNS 318
            E +A  F++LS+  RL I+ SL+E+  +V QL +++K SQP VSKHL +L +AGL+HR ++   V+YSI +  VF L E V   L    ++Q ++F S
Sbjct:   11 EIIALRFKILSEPLRLRIIHSLQEKEKSVNQLREEVKTSQPNVSKHLRILQDAGLVHRRQQGNVVYYSIADESVFDLCETVCNSLEKRFKNQAKIFAS 108          
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Match: A0A2T2RHU2_9CYAN (Transcriptional regulator n=1 Tax=Cyanobacteria bacterium SW_9_44_58 TaxID=1919144 RepID=A0A2T2RHU2_9CYAN)

HSP 1 Score: 79.0 bits (193), Expect = 9.830e-17
Identity = 40/95 (42.11%), Postives = 63/95 (66.32%), Query Frame = 1
Query:   31 VARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMVSKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELVTEKLRADAEHQVRLFN 315
            VA  F+VLS+V+RL IL +LRE+P    ++ +   L Q  +SKHL VL +AG+L RE++    +YSI++PM+F+L ELV + +  + + +   FN
Sbjct:   15 VADYFKVLSEVSRLQILNALREKPMNGKEIAEATGLGQANLSKHLKVLTQAGILKREQKGVSAYYSIKDPMIFELCELVCDTISNEFQERAESFN 109          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20199.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001390035B7.820e-2353.06metalloregulator ArsR/SmtB family transcription fa... [more]
UPI001D06D7101.330e-2051.06metalloregulator ArsR/SmtB family transcription fa... [more]
A0A142XD56_9BACT1.460e-2053.85Putative HTH-type transcriptional regulator n=1 Ta... [more]
A0A2E0QZV8_9BACT1.820e-2048.39Transcriptional regulator n=1 Tax=Verrucomicrobial... [more]
A0A2E2B2L1_9BACT2.190e-2049.47Transcriptional regulator n=1 Tax=Phycisphaeraceae... [more]
A0A7V2D0E5_9BACT5.430e-1948.45ArsR family transcriptional regulator n=1 Tax=Chth... [more]
K9U4N0_CHRTP8.180e-1841.24Transcriptional regulator, ArsR family n=4 Tax=Cya... [more]
E8V633_TERSS1.600e-1747.06Regulatory protein ArsR n=1 Tax=Terriglobus saanen... [more]
A0A3M1SH54_9BACT2.740e-1742.86ArsR family transcriptional regulator n=2 Tax=Acid... [more]
A0A2T2RHU2_9CYAN9.830e-1742.11Transcriptional regulator n=1 Tax=Cyanobacteria ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20199contigP-wetherbeei_contig20199:490..813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1210884.HG799468_gene13637
PFAMsHTH_20,HTH_5
Model size324
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.62e-21
EggNOG OGsCOG0640@1|root,COG0640@2|Bacteria
DescriptionDNA-binding transcription factor activity
Cds size321
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186193.2348099-UTR-P-wetherbeei_contig20199:489..4921683186193.2348099-UTR-P-wetherbeei_contig20199:489..492Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20199 490..492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186193.2455056-CDS-P-wetherbeei_contig20199:492..8131683186193.2455056-CDS-P-wetherbeei_contig20199:492..813Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20199 493..813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20199.1.1prot_P-wetherbeei_contig20199.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20199 493..813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20199.1.1

>prot_P-wetherbeei_contig20199.1.1 ID=prot_P-wetherbeei_contig20199.1.1|Name=mRNA_P-wetherbeei_contig20199.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=107bp
MPEQSHMEAVARLFEVLSDVNRLAILQSLREQPHAVGQLVDQLKLSQPMV
SKHLAVLYEAGLLHRERRRTHVFYSIREPMVFKLWELVTEKLRADAEHQV
RLFNSN*
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mRNA from alignment at P-wetherbeei_contig20199:490..813+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20199.1.1 ID=mRNA_P-wetherbeei_contig20199.1.1|Name=mRNA_P-wetherbeei_contig20199.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig20199:490..813+ (Phaeothamnion wetherbeei SAG_119_79)
AGCATGCCTGAACAATCACATATGGAAGCGGTCGCCCGCCTCTTCGAAGT CCTTAGCGACGTCAACCGGCTCGCTATCTTGCAGAGTCTCCGAGAACAGC CCCACGCAGTAGGTCAGCTCGTAGATCAACTCAAGCTCTCTCAACCGATG GTTTCCAAGCACCTTGCGGTGCTCTACGAGGCCGGCCTGCTGCATCGCGA AAGACGTCGCACCCACGTCTTCTACAGCATACGAGAACCGATGGTTTTCA AGCTCTGGGAGCTGGTGACCGAAAAACTGAGAGCCGACGCCGAGCACCAG GTCCGTCTCTTCAACTCGAACTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20199:490..813+

>mRNA_P-wetherbeei_contig20199.1.1 ID=mRNA_P-wetherbeei_contig20199.1.1|Name=mRNA_P-wetherbeei_contig20199.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig20199:490..813+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTGAACAATCACATATGGAAGCGGTCGCCCGCCTCTTCGAAGTCCT
TAGCGACGTCAACCGGCTCGCTATCTTGCAGAGTCTCCGAGAACAGCCCC
ACGCAGTAGGTCAGCTCGTAGATCAACTCAAGCTCTCTCAACCGATGGTT
TCCAAGCACCTTGCGGTGCTCTACGAGGCCGGCCTGCTGCATCGCGAAAG
ACGTCGCACCCACGTCTTCTACAGCATACGAGAACCGATGGTTTTCAAGC
TCTGGGAGCTGGTGACCGAAAAACTGAGAGCCGACGCCGAGCACCAGGTC
CGTCTCTTCAACTCGAACTAA
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