mRNA_P-wetherbeei_contig20140.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20140.1.1
Unique NamemRNA_P-wetherbeei_contig20140.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20140.1.1 vs. uniprot
Match: A0A6N7GKQ6_9HYPH (MFS transporter n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GKQ6_9HYPH)

HSP 1 Score: 343 bits (879), Expect = 2.530e-114
Identity = 185/264 (70.08%), Postives = 219/264 (82.95%), Query Frame = 1
Query:    1 EDLDTVLPLFAGYLPLGSVVMMLAGPYVMAYGWQALWLVNGAAALLWALVVARLAIQEPPPTQNPGRALLPNIRAVLGAPGPLLLALAFGIYTFQYMAMAGLLPTLLVDRMGLSISAAGTISALTVAANAAGNMSAGALLRWGVSTWAIAASAFVVVGLAGFGIFSNAMPVAVVAVLAALSLGLTGLIPGSIHAAAPKLAPTSALLAIVLGLIGQVTNIGNLLGPAAMALVVERLGWNGAPLLFAGVAVAGVAVALMLRIVMRR 792
            +DL+ VL +FA +LP GSVVMMLAGPY M +GWQALWL+NGA  L +ALVVAR+   E   TQ    ++L N+ AVLGAPGP+LLALAFG YTFQY+A+AGLLP LLVDRMGLSI+AAGT+SA+ VAANA GNMSAGALLR+GV  W+I A AF  VGLA  GIFS+A PV +VA+LAA SLGLTGL+PGSI+AAAP+LAPTSA+LAI LGLI QVTN+GNL GP +MA  V+ LGW+GAPLLFAGVA+AGV +AL+LR V+RR
Sbjct:  128 KDLEPVLAVFAAHLPFGSVVMMLAGPYAMTFGWQALWLINGAIVLGYALVVARMQFDETATTQAAAPSVLSNLGAVLGAPGPVLLALAFGTYTFQYLALAGLLPALLVDRMGLSIAAAGTVSAIAVAANAVGNMSAGALLRFGVPVWSIMAGAFTFVGLAAVGIFSSAAPVMLVAILAAASLGLTGLVPGSIYAAAPRLAPTSAVLAIALGLINQVTNLGNLAGPTSMAFTVQALGWSGAPLLFAGVAIAGVTIALLLRAVLRR 391          
BLAST of mRNA_P-wetherbeei_contig20140.1.1 vs. uniprot
Match: A0A1W6ZSV0_9HYPH (MFS domain-containing protein n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZSV0_9HYPH)

HSP 1 Score: 319 bits (817), Expect = 6.210e-105
Identity = 167/264 (63.26%), Postives = 207/264 (78.41%), Query Frame = 1
Query:    1 EDLDTVLPLFAGYLPLGSVVMMLAGPYVMAYGWQALWLVNGAAALLWALVVARLAIQEPPPTQNPGRALLPNIRAVLGAPGPLLLALAFGIYTFQYMAMAGLLPTLLVDRMGLSISAAGTISALTVAANAAGNMSAGALLRWGVSTWAIAASAFVVVGLAGFGIFSNAMPVAVVAVLAALSLGLTGLIPGSIHAAAPKLAPTSALLAIVLGLIGQVTNIGNLLGPAAMALVVERLGWNGAPLLFAGVAVAGVAVALMLRIVMRR 792
             D +TVL +F  Y+P+GSV+MM+AGP+++AYGWQ LW+VNG   L++A +VA L + E  P  NPGRA+LPNI+ VLGAPGP+LLALAFGIYTFQY AMAGLLPTLLVDRMGLSIS AG I+A TVAANA GNM AGAL+R+G   W I A  F  VGLA FG+FS  +PVAV+AV+A+ SL +TG+IP SI AAAP+ A +SALLAIVLGL+ Q TN+GNL GPA MA +V+  GW  AP+LF GV +AG+ ++L+LR  M+ 
Sbjct:  128 RDRETVLAVFGAYMPIGSVIMMVAGPHLVAYGWQTLWIVNGVVVLVYAALVAFLPLHEEAPPANPGRAVLPNIKQVLGAPGPILLALAFGIYTFQYAAMAGLLPTLLVDRMGLSISTAGAITAATVAANAVGNMFAGALVRFGAPLWGITAFGFSFVGLASFGVFSEGLPVAVIAVMASASLAVTGVIPASIFAAAPRFAASSALLAIVLGLVNQATNLGNLTGPAVMAFIVQHFGWVRAPMLFVGVTIAGLTISLLLRQAMKH 391          
BLAST of mRNA_P-wetherbeei_contig20140.1.1 vs. uniprot
Match: A0A521VU73_9HYPH (MFS transporter n=1 Tax=Xanthobacteraceae bacterium TaxID=2021379 RepID=A0A521VU73_9HYPH)

HSP 1 Score: 282 bits (722), Expect = 1.460e-90
Identity = 158/261 (60.54%), Postives = 193/261 (73.95%), Query Frame = 1
Query:   10 DTVLPLFAGYLPLGSVVMMLAGPYVMAYGWQALWLVNGAAALLWALVVARLAIQEPPPTQNPGRALLPNIRAVLGAPGPLLLALAFGIYTFQYMAMAGLLPTLLVDRMGLSISAAGTISALTVAANAAGNMSAGALLRWGVSTWAIAASAFVVVGLAGFGIFSNAMPVAVVAVLAALSLGLTGLIPGSIHAAAPKLAPTSALLAIVLGLIGQVTNIGNLLGPAAMALVVERLGWNGAPLLFAGVAVAGVAVALMLRIVMRR 792
              V  L+  YLP G+  MML GPY+MA+GWQALW+VNG  AL++A+ ++RL I EPP  +  GRA+L N R VLGAPGP LL L FGIYTFQY A+ GL+PTLLV ++GLSI AAG ISALTVAANA GN+SAGAL+R GV  WA+ A +F   GLA FGIFS A+PV +VA+LA LSL LTG IPGSI AAAP  AP+ ALLA+ +GL+ Q +NIG L GPAA+   V+  GW  APL+F    VAG+A AL+LR + +R
Sbjct:  131 QAVFALWGVYLPGGAAAMMLGGPYLMAFGWQALWIVNGVVALIFAVGLSRLDIAEPPLPRVDGRAILANARRVLGAPGPALLGLTFGIYTFQYAALTGLMPTLLVHQLGLSIPAAGFISALTVAANAFGNLSAGALMRLGVPIWAVIAVSFGFQGLAAFGIFSQALPVWMVALLACLSLALTGAIPGSIFAAAPNYAPSPALLAVAIGLVNQTSNIGALAGPAALGAFVQAFGWAQAPLVFVAATVAGIAAALLLRRLRQR 391          
BLAST of mRNA_P-wetherbeei_contig20140.1.1 vs. uniprot
Match: A0A833LM88_9HYPH (MFS transporter n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833LM88_9HYPH)

HSP 1 Score: 261 bits (667), Expect = 2.870e-82
Identity = 147/264 (55.68%), Postives = 187/264 (70.83%), Query Frame = 1
Query:    1 EDLDTVLPLFAGYLPLGSVVMMLAGPYVMAYGWQALWLVNGAAALLWALVVARLAIQEPPPTQNPGRALLPNIRAVLGAPGPLLLALAFGIYTFQYMAMAGLLPTLLVDRMGLSISAAGTISALTVAANAAGNMSAGALLRWGVSTWAIAASAFVVVGLAGFGIFSNAMPVAVVAVLAALSLGLTGLIPGSIHAAAPKLAPTSALLAIVLGLIGQVTNIGNLLGPAAMALVVERLGWNGAPLLFAGVAVAGVAVALMLRIVMRR 792
             D D V   +  YLP GS +MML GP + A GW+ LWLVNG  AL +A  VAR+   +PP  +   RAL  NI  V+ APGPLLLA  FGIYTF Y A+ GLLP LLVDR+GL I+AAG +SALT  AN  GN+ AGAL+R G   WA+AA+ FVV+G++GF IFS+ +PV V+A +AA +L ++GLIP SI AAAP+L  ++ALL+I +GL    +N+G LLGP A+A  V+R GW+GAP LF GV VAG+A A+ LR V+RR
Sbjct:  128 SDSDRVFACWGVYLPAGSALMMLLGPLIAAPGWRMLWLVNGVLALAYAAAVARVVAAQPPAAETT-RALT-NIARVIRAPGPLLLATIFGIYTFHYFALTGLLPALLVDRLGLGIAAAGMVSALTALANGIGNLLAGALIRMGAPLWAVAAAGFVVMGISGFAIFSSQLPVVVIATVAAATLVISGLIPASIFAAAPRLTASAALLSITIGLAMNGSNLGQLLGPVALAAFVQRFGWDGAPFLFVGVMVAGLAAAMTLRAVLRR 389          
BLAST of mRNA_P-wetherbeei_contig20140.1.1 vs. uniprot
Match: A0A127ETJ2_9HYPH (Major facilitator transporter n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127ETJ2_9HYPH)

HSP 1 Score: 241 bits (615), Expect = 1.560e-74
Identity = 139/265 (52.45%), Postives = 183/265 (69.06%), Query Frame = 1
Query:    1 EDLDTVLPLFAGYLPLGSVVMMLAGPYVMAYGWQALWLVNGAAALLWALVVARLAIQEPPPTQNPGRALLPNIRAVLGAPGPLLLALAFGIYTFQYMAMAGLLPTLLVDRMGLSISAAGTISALTVAANAAGNMSAGALLRWGVSTWAIAASAFVVVGLAGFGIFSNAMPVAVVAVLAALSLGLTGLIPGSIHAAAPKLAPTSALLAIVLGLIGQVTNIGNLLGPAAMALVVERLGWNGAPLLFAGVAVAGVAVALMLRIVMRRV 795
             DLDT+L L+A YLP G+ +MML GP V+  GW+ LWL NGA  L  A+++  LA+  P     PG     N   VL +   LLLA  FG+YTFQ+MAMAGLLPTLL++R GLS++ AG I+ALT  ANAAGN SAG LLR GV  W +   AF ++G+A FGIFS  + +  V +LA  SLGLTGLIPGS+ AAAP++AP  A+L + LGLI Q +N+G+LLGPA +  +V+  GW+ A +LFA +A+ G+A AL LR+ + +V
Sbjct:  129 RDLDTILSLWAAYLPSGAAIMMLVGPTVLEQGWRMLWLGNGALCLAAAMLLFFLAL--PDVAAQPGGRRFGNAGIVLRSKAALLLATTFGLYTFQFMAMAGLLPTLLIERAGLSVATAGMITALTWVANAAGNASAGLLLRAGVPMWTVPLGAFSLMGVAAFGIFSAGLSLTTVVILACTSLGLTGLIPGSVFAAAPRVAP--AMLVLTLGLINQGSNVGSLLGPAVLGSLVQHFGWDSAWILFAAIALCGIAAALGLRVALGKV 389          
BLAST of mRNA_P-wetherbeei_contig20140.1.1 vs. uniprot
Match: A0A537MSS2_9PROT (MFS transporter n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537MSS2_9PROT)

HSP 1 Score: 225 bits (573), Expect = 3.430e-68
Identity = 126/259 (48.65%), Postives = 179/259 (69.11%), Query Frame = 1
Query:    1 EDLDTVLPLFAGYLPLGSVVMMLAGPYVMAYGWQALWLVNGAAALLWALVVARLAIQEPPPTQNPGRALLPNIRAVLGAPGPLLLALAFGIYTFQYMAMAGLLPTLLVDRMGLSISAAGTISALTVAANAAGNMSAGALLRWGVSTWAIAASAFVVVGLAGFGIFSNAMPVAVVAVLAALSLGLTGLIPGSIHAAAPKLAPTSALLAIVLGLIGQVTNIGNLLGPAAMALVVERLGWNGAPLLFAGVAVAGVAVALMLR 777
            +D D V   +A Y   GSV++MLAGP +  +GW++LW   G  AL +ALVV  +A   P      G+ L  +IR ++  PGP+LLALAFG Y+ QY A+ GLLPTLLV+R+GL++++AG ISA+ + AN  G +SAG +LR G   WA+ A+AF  +  A FGIF  +M VA VAVLA  SLG+TG++P SI+AAAP+ AP  ALLA+ +G++ Q +++G+++GP+ +   VERLGW+ +P LFA +   G+AVAL +R
Sbjct:  129 KDRDVVFGCWAVYFAAGSVIVMLAGPLLAVFGWRSLWFSTGLLALAYALVVWWIAPAPPAAAPASGQGL-GDIRRIIRMPGPILLALAFGFYSIQYHALTGLLPTLLVERLGLTLASAGLISAIAIIANGIGGVSAGFMLRRGFRLWALFAAAFAFMAAAAFGIFGASMTVAGVAVLATASLGITGMLPASIYAAAPRFAPQPALLALTVGIVVQASHLGHVVGPSMLGAWVERLGWSSSPALFAAIGCGGLAVALGIR 386          
BLAST of mRNA_P-wetherbeei_contig20140.1.1 vs. uniprot
Match: A0A1Q4D9Y3_9HYPH (MFS domain-containing protein n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4D9Y3_9HYPH)

HSP 1 Score: 204 bits (519), Expect = 6.330e-60
Identity = 119/262 (45.42%), Postives = 172/262 (65.65%), Query Frame = 1
Query:    1 EDLDTVLPLFAGYLPLGSVVMMLAGPYVMAYGWQALWLVNGAAALLWALVVARLA--IQEPPPTQN-PGRALLPNIRAVLGAPGPLLLALAFGIYTFQYMAMAGLLPTLLVDRMGLSISAAGTISALTVAANAAGNMSAGALLRWGVSTWAIAASAFVVVGLAGFGIFSNAMPVAVVAVLAALSLGLTGLIPGSIHAAAPKLAPTSALLAIVLGLIGQVTNIGNLLGPAAMALVVERLGWNGAPLLFAGVAVAGVAVALMLR 777
             D D V+ +++ Y+P+G V++MLAGP+V A GW+ LWL NG  A+L+A V+A +A  +      Q+ P R+ L N R VL   GP++LAL+F +YT  Y A+ GL+PTL++DR+GLSI+ AG + ALT+  NA GN+SAG L R GV  W + A +FV++     GIFS   P A+VA LA +S+G +G++PGS+   AP   P   LL++ LG+I Q + IG  LGPAA+    +  GW+ AP+LF  + V G+A++  LR
Sbjct:  141 RDDDMVMSVWSSYVPIGMVMIMLAGPWVAAGGWRLLWLGNGVLAILYAGVLALVAPTVAVRSGVQSAPRRSALDNARDVLRLRGPVVLALSFCLYTVHYHALVGLMPTLMIDRLGLSITTAGALVALTIFFNAIGNLSAGWLNRVGVPPWMLLAISFVLMATMSLGIFSPYAPAALVAALACVSVGFSGVVPGSVFVCAPSYTPRPELLSVTLGVIVQASTIGQFLGPAALGAWADNFGWSSAPILFVTLGVMGLALSFALR 402          
BLAST of mRNA_P-wetherbeei_contig20140.1.1 vs. uniprot
Match: UPI000E311A95 (MFS transporter n=1 Tax=Pelagibacterium sediminicola TaxID=2248761 RepID=UPI000E311A95)

HSP 1 Score: 192 bits (489), Expect = 1.310e-55
Identity = 109/253 (43.08%), Postives = 159/253 (62.85%), Query Frame = 1
Query:   16 VLPLFAGYLPLGSVVMMLAGPYVMAYGWQALWLVNGAAALLWALVVARLAIQEPPPTQNPGRALLPNIRAVLGAPGPLLLALAFGIYTFQYMAMAGLLPTLLVDRMGLSISAAGTISALTVAANAAGNMSAGALLRWGVSTWAIAASAFVVVGLAGFGIFSNAMPVAVVAVLAALSLGLTGLIPGSIHAAAPKLAPTSALLAIVLGLIGQVTNIGNLLGPAAMALVVERLGWNGAPLLFAGVAVAGVAVALML 774
            V  L+A Y+P+G+V +MLAGP++M   W+ LW++NG  A   A++V  L  +  P         + +I AV+ A  P+LLALAF +YT QY A+   LPT LVDRMGL ++ AGT+SAL +A N AGN++AG +LR G   WA+    F  +GL+ F IF    P+ +    A + LGL  L+P SI    P+L  ++  LA+ +G++ Q ++IG L GPA +AL +E  GW G P LFA +A+ G+A+A++L
Sbjct:  133 VFALWASYMPVGTVAIMLAGPWLMQGDWRLLWILNGLLAAGHAILVLTLGRRGQPVAGKRVNPSVKDILAVVRAGTPVLLALAFTLYTIQYFALTTFLPTFLVDRMGLPLATAGTVSALALAVNIAGNIAAGFILRMGAPLWALFVVVFSTIGLSSFAIFHAGSPLVLAVAAAGVCLGLAALLPSSIIVTMPRLLASNQQLALAMGMVQQASSIGQLAGPALLALCIEWQGWGGVPYLFAAIAIGGLAIAVVL 385          
BLAST of mRNA_P-wetherbeei_contig20140.1.1 vs. uniprot
Match: A0A562FDN8_9HYPH (Putative MFS family arabinose efflux permease n=2 Tax=unclassified Aminobacter TaxID=2644704 RepID=A0A562FDN8_9HYPH)

HSP 1 Score: 182 bits (461), Expect = 1.640e-51
Identity = 108/258 (41.86%), Postives = 151/258 (58.53%), Query Frame = 1
Query:   16 VLPLFAGYLPLGSVVMMLAGPYVMAYGWQALWLVNGAAALLWALVVARLAIQEPPPTQNPGRALLPNIRAVLGAPGPLLLALAFGIYTFQYMAMAGLLPTLLVDRMGLSISAAGTISALTVAANAAGNMSAGALLRWGVSTWAIAASAFVVVGLAGFGIFSNAMPVAVVAVLAALSLGLTGLIPGSIHAAAPKLAPTSALLAIVLGLIGQVTNIGNLLGPAAMALVVERLGWNGAPLLFAGVAVAGVAVALMLRIVMR 789
            V   +A Y+P+G+ VM+L GP +M   W+ LW +NG  A   A+++  L  +E           L +I AV  A  P+LLA  F +YT QY A+   LPT L+++MGLS+ AAGT+SAL V ANA GN+SAG +LR G   W+I A  F  +G+ G  IF  + PV V    A L LGL  L+P SI    P+L  ++  LA+ LG++ Q ++IG L GPA +A   E  GW G P LF  +A  G+ +A++ R  +R
Sbjct:  133 VFAFWAAYMPVGAAVMILLGPALMQGDWRWLWTLNGIVAAAHAVLIFALRPKEAVAVARRASPTLGDIAAVFRAGTPVLLAFTFALYTIQYFALTTFLPTFLIEKMGLSLEAAGTVSALAVVANAIGNISAGFILRMGAPLWSIFAVVFTTIGVCGVAIFHPSSPVEVSVTAAGLCLGLAALMPSSILVTMPRLLSSNQQLALALGIVQQASSIGQLGGPALLAFWTEWQGWGGVPYLFVLIAACGLTIAMVARKALR 390          
BLAST of mRNA_P-wetherbeei_contig20140.1.1 vs. uniprot
Match: A0A1H6GQB3_MAGFU (Predicted arabinose efflux permease, MFS family n=1 Tax=Magnetospirillum fulvum TaxID=1082 RepID=A0A1H6GQB3_MAGFU)

HSP 1 Score: 163 bits (413), Expect = 2.250e-44
Identity = 106/260 (40.77%), Postives = 144/260 (55.38%), Query Frame = 1
Query:    1 EDLDTVLPLFAGYLPLGSVVMMLAGPYVMAYGWQALWLVNGAAALLWALVV-ARLAIQEPPPTQNPGRALLPNIRAVLGAPGPLLLALAFGIYTFQYMAMAGLLPTLLVDRMGLSISAAGTISALTVAANAAGNMSAGALLRWGVSTWAIAASAFVVVGLAGFGIFSNAMPVAVVAVLAALSLGLTGLIPGSIHAAAPKLAPTSALLAIVLGLIGQVTNIGNLLGPAAMALVVERLGWNGAPLLFAGVAVAGVAVALMLR 777
            ED  T   L+A ++P G  V M+A P +   GW+ LWL   A   L+AL+   RL        Q+P R L  ++R    APGP+LLAL F  YT  Y+A+ G LPTLL++RMG++   AG ++A   AAN  GN++ G LLRWGV  W     A + +  + FGIF    PV +   L  L   + GL+PG +   AP  AP   L+ + LGLI Q +NIG + GP  +   V   GW+ A  L AGV + G A+ L+LR
Sbjct:  130 EDRHTAFGLWACFMPFGMAVSMMAAPLLPLIGWRGLWLGMAAFLALYALLAWVRLPAATGHGGQSPSR-LWHDLRQTASAPGPVLLALIFACYTTAYIALTGFLPTLLIERMGVTAGQAGMMTAAVAAANILGNLATGPLLRWGVPRWIPIILANLTIAGSAFGIFLPFTPVPLAYGLCLLLSAVGGLLPGCVLGGAPPYAPDPRLVPVTLGLIMQGSNIGQVTGPVLVGAAVAGWGWSAAAPLMAGVTLTGAALTLVLR 388          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20140.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N7GKQ6_9HYPH2.530e-11470.08MFS transporter n=1 Tax=Hyphomicrobiales bacterium... [more]
A0A1W6ZSV0_9HYPH6.210e-10563.26MFS domain-containing protein n=1 Tax=Pseudorhodop... [more]
A0A521VU73_9HYPH1.460e-9060.54MFS transporter n=1 Tax=Xanthobacteraceae bacteriu... [more]
A0A833LM88_9HYPH2.870e-8255.68MFS transporter n=1 Tax=Pseudorhodoplanes sp. TaxI... [more]
A0A127ETJ2_9HYPH1.560e-7452.45Major facilitator transporter n=1 Tax=Rhodoplanes ... [more]
A0A537MSS2_9PROT3.430e-6848.65MFS transporter n=1 Tax=Alphaproteobacteria bacter... [more]
A0A1Q4D9Y3_9HYPH6.330e-6045.42MFS domain-containing protein n=1 Tax=Rhizobiales ... [more]
UPI000E311A951.310e-5543.08MFS transporter n=1 Tax=Pelagibacterium sediminico... [more]
A0A562FDN8_9HYPH1.640e-5141.86Putative MFS family arabinose efflux permease n=2 ... [more]
A0A1H6GQB3_MAGFU2.250e-4440.77Predicted arabinose efflux permease, MFS family n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20140contigP-wetherbeei_contig20140:5..808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog935261.JAGL01000020_gene434
PFAMsMFS_1
Model size804
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.69e-52
EggNOG OGsCOG0477@1|root,COG2814@2|Bacteria,1PD60@1224|Proteobacteria,2TSMZ@28211|Alphaproteobacteria,43K5B@69277|Phyllobacteriaceae
DescriptionMajor Facilitator Superfamily
Cds size804
COG categoryEGP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186192.208203-CDS-P-wetherbeei_contig20140:4..8081683186192.208203-CDS-P-wetherbeei_contig20140:4..808Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20140 5..808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20140.1.1prot_P-wetherbeei_contig20140.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20140 5..808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20140.1.1

>prot_P-wetherbeei_contig20140.1.1 ID=prot_P-wetherbeei_contig20140.1.1|Name=mRNA_P-wetherbeei_contig20140.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=268bp
EDLDTVLPLFAGYLPLGSVVMMLAGPYVMAYGWQALWLVNGAAALLWALV
VARLAIQEPPPTQNPGRALLPNIRAVLGAPGPLLLALAFGIYTFQYMAMA
GLLPTLLVDRMGLSISAAGTISALTVAANAAGNMSAGALLRWGVSTWAIA
ASAFVVVGLAGFGIFSNAMPVAVVAVLAALSLGLTGLIPGSIHAAAPKLA
PTSALLAIVLGLIGQVTNIGNLLGPAAMALVVERLGWNGAPLLFAGVAVA
GVAVALMLRIVMRRVPV*
back to top

mRNA from alignment at P-wetherbeei_contig20140:5..808+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20140.1.1 ID=mRNA_P-wetherbeei_contig20140.1.1|Name=mRNA_P-wetherbeei_contig20140.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=804bp|location=Sequence derived from alignment at P-wetherbeei_contig20140:5..808+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGATCTCGACACGGTGCTGCCGCTGTTCGCCGGCTACCTGCCGCTCGG CTCGGTCGTCATGATGCTGGCCGGGCCATACGTGATGGCTTACGGCTGGC AGGCGCTGTGGCTGGTCAACGGCGCCGCCGCACTCCTCTGGGCGCTGGTG GTGGCCCGTCTCGCGATCCAGGAACCGCCGCCGACGCAAAATCCCGGCCG CGCGCTCTTGCCGAACATTCGCGCCGTGCTGGGCGCACCGGGCCCGCTCC TGCTGGCGCTCGCCTTCGGTATCTACACGTTCCAATACATGGCGATGGCC GGGCTGCTGCCGACGCTGCTCGTCGACCGCATGGGACTGTCGATTTCGGC GGCCGGCACGATCAGCGCACTAACGGTGGCGGCCAACGCCGCCGGCAACA TGTCGGCCGGCGCGCTGCTGCGCTGGGGCGTGTCGACATGGGCTATTGCC GCCAGCGCCTTCGTCGTGGTCGGGCTCGCCGGATTCGGAATTTTTTCGAA CGCCATGCCGGTCGCCGTCGTCGCGGTGCTGGCCGCGCTGAGCCTCGGGC TGACGGGGCTCATCCCGGGCTCGATCCACGCCGCCGCGCCGAAACTCGCG CCGACGTCGGCGCTACTGGCTATCGTCCTCGGGCTGATCGGCCAAGTCAC CAACATCGGAAACTTGCTGGGCCCGGCCGCGATGGCGCTGGTGGTCGAGC GGCTGGGCTGGAACGGCGCACCGTTGCTGTTCGCCGGAGTGGCTGTGGCC GGCGTGGCGGTTGCGCTGATGCTGCGGATCGTCATGCGGCGCGTGCCGGT GTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig20140:5..808+

>mRNA_P-wetherbeei_contig20140.1.1 ID=mRNA_P-wetherbeei_contig20140.1.1|Name=mRNA_P-wetherbeei_contig20140.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=804bp|location=Sequence derived from alignment at P-wetherbeei_contig20140:5..808+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGATCTCGACACGGTGCTGCCGCTGTTCGCCGGCTACCTGCCGCTCGG
CTCGGTCGTCATGATGCTGGCCGGGCCATACGTGATGGCTTACGGCTGGC
AGGCGCTGTGGCTGGTCAACGGCGCCGCCGCACTCCTCTGGGCGCTGGTG
GTGGCCCGTCTCGCGATCCAGGAACCGCCGCCGACGCAAAATCCCGGCCG
CGCGCTCTTGCCGAACATTCGCGCCGTGCTGGGCGCACCGGGCCCGCTCC
TGCTGGCGCTCGCCTTCGGTATCTACACGTTCCAATACATGGCGATGGCC
GGGCTGCTGCCGACGCTGCTCGTCGACCGCATGGGACTGTCGATTTCGGC
GGCCGGCACGATCAGCGCACTAACGGTGGCGGCCAACGCCGCCGGCAACA
TGTCGGCCGGCGCGCTGCTGCGCTGGGGCGTGTCGACATGGGCTATTGCC
GCCAGCGCCTTCGTCGTGGTCGGGCTCGCCGGATTCGGAATTTTTTCGAA
CGCCATGCCGGTCGCCGTCGTCGCGGTGCTGGCCGCGCTGAGCCTCGGGC
TGACGGGGCTCATCCCGGGCTCGATCCACGCCGCCGCGCCGAAACTCGCG
CCGACGTCGGCGCTACTGGCTATCGTCCTCGGGCTGATCGGCCAAGTCAC
CAACATCGGAAACTTGCTGGGCCCGGCCGCGATGGCGCTGGTGGTCGAGC
GGCTGGGCTGGAACGGCGCACCGTTGCTGTTCGCCGGAGTGGCTGTGGCC
GGCGTGGCGGTTGCGCTGATGCTGCGGATCGTCATGCGGCGCGTGCCGGT
GTGA
back to top