mRNA_P-wetherbeei_contig2013.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2013.1.1
Unique NamemRNA_P-wetherbeei_contig2013.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2013.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2013contigP-wetherbeei_contig2013:2486..5308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LL31
PFAMsPUB,UCH,USP7_C2,USP7_ICP0_bdg
Model size1742
Max annot lvl2759|Eukaryota
KEGG koko:K11838
KEGG Pathwayko04068,ko05168,ko05169,ko05203,map04068,map05168,map05169,map05203
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.39e-06
EggNOG OGsCOG5077@1|root,KOG1863@2759|Eukaryota
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
Cds size939
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2013.1.1prot_P-wetherbeei_contig2013.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2013 2869..4888 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186191.9323254-UTR-P-wetherbeei_contig2013:2485..28681683186191.9323254-UTR-P-wetherbeei_contig2013:2485..2868Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2013 2486..2868 +
1683186191.983167-UTR-P-wetherbeei_contig2013:4888..53081683186191.983167-UTR-P-wetherbeei_contig2013:4888..5308Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2013 4889..5308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186191.9440684-CDS-P-wetherbeei_contig2013:2868..31021683186191.9440684-CDS-P-wetherbeei_contig2013:2868..3102Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2013 2869..3102 +
1683186191.9539623-CDS-P-wetherbeei_contig2013:3435..37711683186191.9539623-CDS-P-wetherbeei_contig2013:3435..3771Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2013 3436..3771 +
1683186191.9639883-CDS-P-wetherbeei_contig2013:4149..43531683186191.9639883-CDS-P-wetherbeei_contig2013:4149..4353Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2013 4150..4353 +
1683186191.9737875-CDS-P-wetherbeei_contig2013:4723..48881683186191.9737875-CDS-P-wetherbeei_contig2013:4723..4888Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2013 4724..4888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2013.1.1

>prot_P-wetherbeei_contig2013.1.1 ID=prot_P-wetherbeei_contig2013.1.1|Name=mRNA_P-wetherbeei_contig2013.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=313bp
MPTMPAGEVLLFIRSYIPPKGPDGRGTVTEAEMTYCGSLEIALDLPASVL
ASRAAELAGCPGATVVLYEIVTNVNVNKIDLRQTLAEGELQHGDIICLQQ
LPQPTEEPERLPAPDAAMDADDDDDEDEDDAGGWNVGAMSQHMRRRRLHR
RHRRGRELGMSEWTPVEGVYRLQKDLSTADKYCFFKSSHMLVHFVPLGLR
EKDYLPKGSYTAETESPGPRPGMTVEMGVKTVCLATAEALVSLFQCRVDP
RRVRLLPTTPTGNPYMGREKPAFPPIDARDNQLARFLRKGSSDSLIGSYD
TLFFEVRMVPAC*
back to top

mRNA from alignment at P-wetherbeei_contig2013:2486..5308+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2013.1.1 ID=mRNA_P-wetherbeei_contig2013.1.1|Name=mRNA_P-wetherbeei_contig2013.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2823bp|location=Sequence derived from alignment at P-wetherbeei_contig2013:2486..5308+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCGCGGGTCCAGGGGAAGGACGGACAGGCATCAGGAGCTGCCGCCGAG
TGCCCCTCCCTGGAGCCGCCGGCTGCTCCAGCCGCCACCCTGCAGCCGCC
GCAACCGGATGCGGAAGAACGCGTTTCGGTGAAGCGCGACGGGACCCGGG
AGGCAGGAGCCACCGGATGTGCGGCCGGTGGGGCTGGTGAGGGTGCAATT
GAGGGTGATGCCGAGGGAGAGGCCGCCAGCGCCGCCGCCGCCGTCGCTGA
AGCTGCCAACTCTGACTCTGTGAAGGCAGAAACTGCGGACGACGACAACG
CCGCCGCCGCGGCGGCGGTGGTGCCGGCGGGGTTAGAGGAGGGCGGCGAT
GCCACAGGGGAGGCGCGATCGGTGGTGGCGAGGATGCCAACGATGCCAGC
GGGCGAGGTCCTGCTCTTCATAAGATCGTACATCCCGCCGAAGGGGCCGG
ACGGCCGCGGCACGGTGACGGAGGCGGAGATGACGTACTGCGGCTCGCTC
GAGATCGCCCTCGATCTGCCGGCATCAGTGCTCGCCTCACGGGCGGCCGA
GTTGGCCGGGTGTCCCGGTGCGACGGTCGTGCTGTACGAGATCGTCACCA
ATGTCAACGTCAACAAGGTGGGCGGAAAGCAGAGCAGAGAGCAGGTTGAC
GCTCTGCTACAACTGGGGCTCTTGGGGTTTCTCCGTCAGTACAAACTTGT
TTGTCTGCTTGGGATGGCTCTGATGTTGCGGCGCCGCTTCATCCGACCAA
CCTCTTTGCGTGTTCGACGTGAGTGTCGCTGTCGCTGTCCGCGTTCTGTT
CTTGTCCCTGTTGACGCTAAATTGCTCACAATTAATTGCTAACAGTCTTT
CGTCTCTATACACTTATTATGTTTTTCCCTTCCTTTTTTCGTCTCACTTT
CCGCGCACCGTCTCGACCTACCGGTCCATAACACCGTTGTAAAACGGCAG
ATCGACTTACGGCAGACGCTGGCGGAAGGGGAATTGCAGCATGGCGACAT
CATCTGCCTCCAGCAGCTTCCGCAGCCGACAGAGGAGCCAGAGCGATTGC
CGGCCCCGGACGCTGCGATGGACGCCGACGACGACGACGACGAGGACGAA
GACGATGCGGGGGGCTGGAACGTGGGCGCCATGTCGCAGCACATGCGACG
GCGCCGGCTGCATCGCCGGCATCGGCGTGGGCGCGAGCTGGGGATGTCCG
AATGGACGCCGGTGGAAGGCGTGTACCGGCTGCAAAAAGACCTTTCGACG
GCCGACAAATACTGCTTCTTCAAGAGCTCGCACATGGTGAGGCGGCCGCC
TCGCCTGGTTTGGCTTTCCTACTGTTGGCGTTGGAGGCGTGCCGTGGTGT
CTGTCATCCACCAGCATTACACCGTCTTCTCTTTTCTTTTTTAATTCGTG
CCTGGACAAAAGAACGAACTTTCGTGCTTCTGGACGCGTCGGACTTGGTT
GGAGCTTGCACCGTTTTGCGGCTGGTGTCGTTCTGATATTCTGTTCTTGA
TCACACACAGCGTCACTTCCAGTCCATCGAATTTTCATCAACACTATATT
AAACTGTTCCATCCGACCCGCTCCAACTCCAGTACCCGCCCATCAACCCA
ATCTTGGCGCCATCTTTCCCCCTTTCTGTGGCCGAACGAACGGCAAATGG
AACGACCCGGTCAGCTGGTGCACTTTGTGCCCCTGGGGCTGCGCGAAAAG
GACTATCTTCCGAAGGGCAGCTACACCGCCGAGACGGAGAGCCCAGGGCC
GCGGCCGGGCATGACGGTGGAGATGGGCGTCAAGACGGTCTGCTTGGCCA
CGGCCGAAGCCCTTGTCTCGCTCTTCCAGTGCCGGGTCGACCCGCGCCGG
GTCCGGCTGCTGCCAACGGTGAGCGAGCGAGACCCAGCCCGGCTGGCGGG
CTCATGGGGCAGGCGGATGGCGCACGTTGCGTGTTTACCGGCGGTCGGGA
CTGGCAAACCAGTTCCTCTCAAACCCTCTAGTGCCCCTTTTCCTCTTGTT
TCCGATCTCTTTCGCTGCGGCCGCTTGCGGAGTCTTCCCGGGACGTTTGG
ATGAGGAATGCCTACGCTGCGGCTGCGCTGTAGCCCTTAAATGTTTTTTG
GCAGCTCTTCTAACCCTTTCATTGTTTGGGCTGACTCGCTTGAAAAACTT
GGTCAGAAAGCATGGTTCCCTGGGCTGATGGTGCTCGCTCGCCGCTCTTT
TTGCTTTTGTGCGTGCTCCCGGCGGGTTTCCGCGCCAGACTCCGACGGGC
AATCCGTACATGGGGCGAGAGAAGCCTGCCTTTCCCCCGATCGACGCTCG
GGACAATCAGCTGGCCCGGTTCCTGCGAAAGGGCTCTTCGGACAGCCTTA
TCGGGAGCTACGACACGCTTTTTTTCGAGGTTAGAATGGTGCCCGCCTGC
TGACATACACCTGATGCGCGTCGCTGCTGCTCCTGAAAACTCAATGCATT
CATAACGCCGAACCATGTCATGACTCCACTTTCCCAGAACAAAAATGCGA
TGTTTAAACTATGGGAGGAATTGGGGCGCGCACGGAGCATACGGTTCCGT
TGGTTTGAGCGTGACGCCGTGGCCGCCGCCGTCGCCGCCGCCGTCGCCGC
TGCCGCTGTTGCCACCCACCTTACCGCTGCTGCCGCTGTACCTGACAGGT
GCTGCCGTTCACCCGAGAAGAGATGCACGGACACATTCTGATTGACCTCT
TCACGGTAGACAAGAATGTAAGCGAGAGGCACATGCACCTGATCATGCTT
GTCTTTCCTTTCCTCGCTTGTTTGGTGGTCAGTGTGGCTTCTGTTCGGTG
CCTTTGAGGGAGACGAATCTCCT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig2013:2486..5308+

>mRNA_P-wetherbeei_contig2013.1.1 ID=mRNA_P-wetherbeei_contig2013.1.1|Name=mRNA_P-wetherbeei_contig2013.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=939bp|location=Sequence derived from alignment at P-wetherbeei_contig2013:2486..5308+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCAACGATGCCAGCGGGCGAGGTCCTGCTCTTCATAAGATCGTACAT
CCCGCCGAAGGGGCCGGACGGCCGCGGCACGGTGACGGAGGCGGAGATGA
CGTACTGCGGCTCGCTCGAGATCGCCCTCGATCTGCCGGCATCAGTGCTC
GCCTCACGGGCGGCCGAGTTGGCCGGGTGTCCCGGTGCGACGGTCGTGCT
GTACGAGATCGTCACCAATGTCAACGTCAACAAGATCGACTTACGGCAGA
CGCTGGCGGAAGGGGAATTGCAGCATGGCGACATCATCTGCCTCCAGCAG
CTTCCGCAGCCGACAGAGGAGCCAGAGCGATTGCCGGCCCCGGACGCTGC
GATGGACGCCGACGACGACGACGACGAGGACGAAGACGATGCGGGGGGCT
GGAACGTGGGCGCCATGTCGCAGCACATGCGACGGCGCCGGCTGCATCGC
CGGCATCGGCGTGGGCGCGAGCTGGGGATGTCCGAATGGACGCCGGTGGA
AGGCGTGTACCGGCTGCAAAAAGACCTTTCGACGGCCGACAAATACTGCT
TCTTCAAGAGCTCGCACATGCTGGTGCACTTTGTGCCCCTGGGGCTGCGC
GAAAAGGACTATCTTCCGAAGGGCAGCTACACCGCCGAGACGGAGAGCCC
AGGGCCGCGGCCGGGCATGACGGTGGAGATGGGCGTCAAGACGGTCTGCT
TGGCCACGGCCGAAGCCCTTGTCTCGCTCTTCCAGTGCCGGGTCGACCCG
CGCCGGGTCCGGCTGCTGCCAACGACTCCGACGGGCAATCCGTACATGGG
GCGAGAGAAGCCTGCCTTTCCCCCGATCGACGCTCGGGACAATCAGCTGG
CCCGGTTCCTGCGAAAGGGCTCTTCGGACAGCCTTATCGGGAGCTACGAC
ACGCTTTTTTTCGAGGTTAGAATGGTGCCCGCCTGCTGA
back to top