mRNA_P-wetherbeei_contig20115.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20115.1.1
Unique NamemRNA_P-wetherbeei_contig20115.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20115.1.1 vs. uniprot
Match: A0A6H5JT74_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT74_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.650e-5
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 2 
Query:  206 YGFVIFALPLQATVAIEDMTGKEFKGRIVEVKAAVTANKPQRAQ 337
            YGFV F  PL AT+AIE + GKE KGR+VE+K A+T+ + +R Q
Sbjct:  139 YGFVDFDQPLTATIAIETLNGKELKGRVVELKPAITSREKRRKQ 182
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20115.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JT74_9PHAE2.650e-556.82RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20115contigP-wetherbeei_contig20115:335..873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size539
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-12_002780.1
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186191.3197503-UTR-P-wetherbeei_contig20115:334..4611683186191.3197503-UTR-P-wetherbeei_contig20115:334..461Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20115 335..461 +
1683186191.3503695-UTR-P-wetherbeei_contig20115:773..8731683186191.3503695-UTR-P-wetherbeei_contig20115:773..873Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20115 774..873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186191.3390374-CDS-P-wetherbeei_contig20115:461..7731683186191.3390374-CDS-P-wetherbeei_contig20115:461..773Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20115 462..773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20115.1.1prot_P-wetherbeei_contig20115.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20115 462..773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20115.1.1

>prot_P-wetherbeei_contig20115.1.1 ID=prot_P-wetherbeei_contig20115.1.1|Name=mRNA_P-wetherbeei_contig20115.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
MACIPPFLPFPLSNHRSLCTSSPFGSYGFVIFALPLQATVAIEDMTGKEF
KGRIVEVKAAVTANKPQRAQKGRAAEGDEDAMDFISEGEKPAAQEGSAEA
AEP*
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mRNA from alignment at P-wetherbeei_contig20115:335..873+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20115.1.1 ID=mRNA_P-wetherbeei_contig20115.1.1|Name=mRNA_P-wetherbeei_contig20115.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=539bp|location=Sequence derived from alignment at P-wetherbeei_contig20115:335..873+ (Phaeothamnion wetherbeei SAG_119_79)
AGCCTAAAGGGTACGACAGGGGAAGTGCATCTCTTACGAGCTTCCCCTCC
ATTTGCCGCATTTTATCTCTATTATGCATTGAGACGCGTGCCTTTAGACT
TGCGCTTGTTAGTGCGGCTGATATGCAATGGCCTGCATCCCTCCTTTTTT
ACCCTTCCCCCTAAGCAACCACCGTTCACTGTGCACTTCCTCTCCATTTG
GCAGCTACGGCTTTGTCATCTTTGCGCTCCCTCTCCAAGCGACGGTGGCG
ATTGAAGACATGACCGGGAAGGAGTTCAAGGGGCGCATCGTGGAAGTGAA
GGCGGCCGTCACTGCGAACAAGCCGCAGCGGGCTCAGAAGGGACGGGCGG
CGGAGGGCGACGAGGATGCGATGGATTTTATATCGGAAGGGGAGAAACCG
GCAGCGCAGGAGGGATCGGCTGAGGCTGCGGAGCCATAATTTATAGTAAA
GATTTTGGAAAACAAGAACGGCTGCTTCCTCAGGATCATACCTAGGCCTC
CCCGCACCCTGAAAATAACGAGAAGAGAGAGGGTTGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20115:335..873+

>mRNA_P-wetherbeei_contig20115.1.1 ID=mRNA_P-wetherbeei_contig20115.1.1|Name=mRNA_P-wetherbeei_contig20115.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig20115:335..873+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCTGCATCCCTCCTTTTTTACCCTTCCCCCTAAGCAACCACCGTTC
ACTGTGCACTTCCTCTCCATTTGGCAGCTACGGCTTTGTCATCTTTGCGC
TCCCTCTCCAAGCGACGGTGGCGATTGAAGACATGACCGGGAAGGAGTTC
AAGGGGCGCATCGTGGAAGTGAAGGCGGCCGTCACTGCGAACAAGCCGCA
GCGGGCTCAGAAGGGACGGGCGGCGGAGGGCGACGAGGATGCGATGGATT
TTATATCGGAAGGGGAGAAACCGGCAGCGCAGGAGGGATCGGCTGAGGCT
GCGGAGCCATAA
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