mRNA_P-wetherbeei_contig20104.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20104.1.1
Unique NamemRNA_P-wetherbeei_contig20104.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20104.1.1 vs. uniprot
Match: A0A4Z0C3B2_9BURK (RidA family protein n=1 Tax=Ramlibacter rhizophilus TaxID=1781167 RepID=A0A4Z0C3B2_9BURK)

HSP 1 Score: 117 bits (293), Expect = 2.220e-31
Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = 1
Query:    4 LKALNPATIAPPAGKYQLAVEVPAGARMLFISGQLGLKPDGTLAKGIEGQADAVWANIKAILAEAGMSFADLVKVNILLIDAGDILPSRAARDRALGSTRPPASTLAVIKALAAPEYLIEIEAIAAKA 387
            LKALNP ++A P G Y  AV  P+G R L +SGQ+G++PDG++ +  EGQA+  W N+ A+L+EAGM   DLVKV+  L DA  +      R + LG  RP ASTL V+ ALA P++ +E+EAIA KA
Sbjct:    5 LKALNPPSVAAPGGPYSQAVLAPSGGRWLHVSGQVGVRPDGSIPEHFEGQAEVCWQNLVALLSEAGMGVQDLVKVSTFLTDAAQVARLGPVRAKFLGDARP-ASTLVVVAALARPQWQVEVEAIAWKA 131          
BLAST of mRNA_P-wetherbeei_contig20104.1.1 vs. uniprot
Match: A0A536YL67_9PROT (RidA family protein n=8 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YL67_9PROT)

HSP 1 Score: 117 bits (293), Expect = 4.080e-31
Identity = 66/129 (51.16%), Postives = 86/129 (66.67%), Query Frame = 1
Query:    1 MLKALNPATIAPPAGKYQLAVEVPAGARMLFISGQLGLKPDGTLAKGIEGQADAVWANIKAILAEAGMSFADLVKVNILLIDAGDILPSRAARDRALGSTRPPASTLAVIKALAAPEYLIEIEAIAAKA 387
            MLK  NP +IA P G Y L +EVP GAR L ++GQ+G++PDG++   IE Q + VW NI A+LA+AGM   D+VK+   L    +       R + LGS RP ASTL VI +LA PE+L+E+EAIAAKA
Sbjct:    1 MLKVHNPRSIAAPIGTYSLGIEVPPGARWLHVAGQIGVRPDGSVPSTIEEQTEVVWQNILAVLADAGMGIGDVVKITSFLTRHENFPSFAQVRAKFLGSHRP-ASTLLVISSLARPEFLVEVEAIAAKA 128          
BLAST of mRNA_P-wetherbeei_contig20104.1.1 vs. uniprot
Match: A0A2D6FYT1_9PROT (Enamine deaminase RidA n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6FYT1_9PROT)

HSP 1 Score: 115 bits (289), Expect = 8.480e-31
Identity = 66/128 (51.56%), Postives = 82/128 (64.06%), Query Frame = 1
Query:    1 MLKALNPATIAPPAGKYQLAVEVPAGARMLFISGQLGLKPDGTLAKGIEGQADAVWANIKAILAEAGMSFADLVKVNILLIDAGDILPSRAARDRALGSTRPPASTLAVIKALAAPEYLIEIEAIAAK 384
            M K  NP  + PP   Y  A  VPAGA +LFISGQLG+KPDG L  GIE QA+  + NI AILA  G+S ADLVK+ + L D     P+  AR +  G  +P  STL ++  LAAPE+LIE+E IAA+
Sbjct:    1 MTKFFNPEGVTPPVAAYTHAALVPAGAELLFISGQLGIKPDGDLGDGIEEQAEWAYRNIAAILASEGLSPADLVKMQMFLTDRAYRAPAGEARQKVFGDAKP-TSTLLIVAGLAAPEFLIEVEGIAAR 127          
BLAST of mRNA_P-wetherbeei_contig20104.1.1 vs. uniprot
Match: A0A4Q2R6B3_9HYPH (RidA family protein n=1 Tax=Lichenibacterium ramalinae TaxID=2316527 RepID=A0A4Q2R6B3_9HYPH)

HSP 1 Score: 115 bits (288), Expect = 1.270e-30
Identity = 66/129 (51.16%), Postives = 84/129 (65.12%), Query Frame = 1
Query:    1 MLKALNPATIAPPAGKYQLAVEVPAGARMLFISGQLGLKPDGTLAKGIEGQADAVWANIKAILAEAGMSFADLVKVNILLIDAGDILPSRAARDRAL-GSTRPPASTLAVIKALAAPEYLIEIEAIAAK 384
            ML  L PA + PP  +Y   V VPAGAR +F SGQLG+ PDG +   +EGQA   +A I AILAEAGM  ADLV++N  +    D+    AARDRAL G   PPASTL ++     PE+L+E+EA+AA+
Sbjct:    1 MLARLAPAALHPPFARYAHGVAVPAGARTVFCSGQLGIAPDGAVPADVEGQAALCFAAIAAILAEAGMGLADLVRLNAYVTRRQDMAGYMAARDRALPGDAPPPASTLMIVGGFTRPEFLVEVEAVAAR 129          
BLAST of mRNA_P-wetherbeei_contig20104.1.1 vs. uniprot
Match: A0A512NGQ8_9HYPH (Enamine deaminase RidA n=2 Tax=Reyranella soli TaxID=1230389 RepID=A0A512NGQ8_9HYPH)

HSP 1 Score: 115 bits (288), Expect = 1.310e-30
Identity = 65/123 (52.85%), Postives = 85/123 (69.11%), Query Frame = 1
Query:   16 NPATIAPPAGKYQLAVEVPAGARMLFISGQLGLKPDGTLAKGIEGQADAVWANIKAILAEAGMSFADLVKVNILLIDAGDILPSRAARDRALGSTRPPASTLAVIKALAAPEYLIEIEAIAAK 384
            NP ++A  AGKY LA EVPAGAR++F++GQ+GL   G LA GIE Q D VW NI  +L  A M+F D+VK+N  L D   I+ +RAARD+ +G   P +STL +++ LA P  L+EIE IAAK
Sbjct:   12 NPKSVAL-AGKYSLAAEVPAGARVVFVAGQVGLDGSGKLADGIEAQCDQVWKNIGEVLKAADMTFKDIVKINSFLTDGRFIMANRAARDKVIGEPYP-SSTLLIVQGLADPAMLVEIEVIAAK 132          
BLAST of mRNA_P-wetherbeei_contig20104.1.1 vs. uniprot
Match: A0A536TMA2_9PROT (RidA family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536TMA2_9PROT)

HSP 1 Score: 115 bits (288), Expect = 2.330e-30
Identity = 65/129 (50.39%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    1 MLKALNPATIAPPAGKYQLAVEVPAGARMLFISGQLGLKPDGTLAKGIEGQADAVWANIKAILAEAGMSFADLVKVNILLIDAGDILPSRAARDRALGSTRPPASTLAVIKALAAPEYLIEIEAIAAKA 387
            ML   NP +IA P G Y   +EVP GAR L+++GQ+G++PDG++   IE Q + VW NI A+LA+AGM   D+VK+   L    +       R R LGS RP ASTL VI +LA PE+L+E+EAIAAKA
Sbjct:    1 MLNVHNPRSIAAPIGTYSHGIEVPPGARWLYVAGQIGVRPDGSVPASIEEQTELVWQNILAVLADAGMGIGDVVKITSFLTRHENFQRFAQVRARFLGSHRP-ASTLLVISSLARPEFLVEVEAIAAKA 128          
BLAST of mRNA_P-wetherbeei_contig20104.1.1 vs. uniprot
Match: A0A3S2WCY6_9PROT (RidA family protein n=1 Tax=Hwanghaeella grinnelliae TaxID=2500179 RepID=A0A3S2WCY6_9PROT)

HSP 1 Score: 114 bits (284), Expect = 5.000e-30
Identity = 64/127 (50.39%), Postives = 79/127 (62.20%), Query Frame = 1
Query:    4 LKALNPATIAPPAGKYQLAVEVPAGARMLFISGQLGLKPDGTLAKGIEGQADAVWANIKAILAEAGMSFADLVKVNILLIDAGDILPSRAARDRALGSTRPPASTLAVIKALAAPEYLIEIEAIAAK 384
            L   NP TIA P  +Y  AVE+P  AR LFISGQ+GL PDG +    E Q++ VW N+KAIL  AGM   DLV+VN  + DA  +   R  RD+ L     PASTL V+  LA P+  IE+EA+AAK
Sbjct:    3 LTIYNPDTIAAPLARYSHAVEIPKDARALFISGQVGLTPDGAMPDSAEEQSENVWLNLKAILENAGMGLEDLVRVNAYITDARYVAAYRTGRDKVLTDGIAPASTLVVVSGLADPKMKIEVEAVAAK 129          
BLAST of mRNA_P-wetherbeei_contig20104.1.1 vs. uniprot
Match: A0A2W4QSL9_9PROT (Enamine deaminase RidA n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4QSL9_9PROT)

HSP 1 Score: 113 bits (283), Expect = 6.500e-30
Identity = 64/127 (50.39%), Postives = 84/127 (66.14%), Query Frame = 1
Query:    1 MLKALNPATIAPPAGKYQLAVEVPAGARMLFISGQLGLKPDGTLAKGIEGQADAVWANIKAILAEAGMSFADLVKVNILLIDAGDILPSRAARDRALGSTRPPASTLAVIKALAAPEYLIEIEAIAA 381
            MLKAL+PA+I PP  +Y   +EVPAG R++  SGQLG++PD T+    E QA+  +ANI AILAEAGM   ++V++N  + D   +    AARDR    T PPASTL ++     PE+ IEIEAIAA
Sbjct:    1 MLKALSPASIRPPFARYSHGIEVPAGKRLVVCSGQLGIRPDDTIPDDAEEQAELCFANIAAILAEAGMGLGNVVRINAYVSDRAHMQGYMAARDRLFTGT-PPASTLIIVSGFTRPEFKIEIEAIAA 126          
BLAST of mRNA_P-wetherbeei_contig20104.1.1 vs. uniprot
Match: A0A1F4DR78_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DR78_9PROT)

HSP 1 Score: 113 bits (282), Expect = 9.490e-30
Identity = 62/128 (48.44%), Postives = 82/128 (64.06%), Query Frame = 1
Query:    1 MLKALNPATIAPPAGKYQLAVEVPAGARMLFISGQLGLKPDGTLAKGIEGQADAVWANIKAILAEAGMSFADLVKVNILLIDAGDILPSRAARDRALGSTRPPASTLAVIKALAAPEYLIEIEAIAAK 384
            M +  +P TIAPPA  Y   +EVP  AR+LF++GQ G++PDG++   IE Q+D VW NI AIL E GM   DL+KV   +  A ++    A RD+ L   RP  +TL V+  LA  EYL+E+EAIAAK
Sbjct:    1 MFRTFSPKTIAPPAATYVHGLEVPPNARLLFVAGQTGMRPDGSVPGSIEEQSDQVWKNISAILTEGGMGIGDLIKVTSFVTKAENLKKYGAVRDKYLRDHRP-TTTLLVVSGLARQEYLVEVEAIAAK 127          
BLAST of mRNA_P-wetherbeei_contig20104.1.1 vs. uniprot
Match: A0A0Q3I270_9HYPH (Enamine deaminase RidA n=2 Tax=Bosea TaxID=85413 RepID=A0A0Q3I270_9HYPH)

HSP 1 Score: 111 bits (277), Expect = 5.280e-29
Identity = 61/126 (48.41%), Postives = 82/126 (65.08%), Query Frame = 1
Query:    4 LKALNPATIAPPAGKYQLAVEVPAGARMLFISGQLGLKPDGTLAKGIEGQADAVWANIKAILAEAGMSFADLVKVNILLIDAGDILPSRAARDRALGSTRPPASTLAVIKALAAPEYLIEIEAIAA 381
            +K LNPA IAPP  +Y   +E+PAG R+ F SGQLG+  DGT+   +  QAD  +ANI AILAEAGM+ AD+V+VN  + D   +     +RD  +G T PPASTL ++     PE+ +EIE +AA
Sbjct:    1 MKPLNPAAIAPPFARYSHGMELPAGRRLAFCSGQLGIAADGTVPDDVRAQADLCFANIAAILAEAGMTLADIVRVNAYVTDRAYMKGYMESRDAHVG-TPPPASTLMIVSGFTRPEFKVEIEVVAA 125          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20104.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Z0C3B2_9BURK2.220e-3150.00RidA family protein n=1 Tax=Ramlibacter rhizophilu... [more]
A0A536YL67_9PROT4.080e-3151.16RidA family protein n=8 Tax=Betaproteobacteria bac... [more]
A0A2D6FYT1_9PROT8.480e-3151.56Enamine deaminase RidA n=1 Tax=Rhodospirillaceae b... [more]
A0A4Q2R6B3_9HYPH1.270e-3051.16RidA family protein n=1 Tax=Lichenibacterium ramal... [more]
A0A512NGQ8_9HYPH1.310e-3052.85Enamine deaminase RidA n=2 Tax=Reyranella soli Tax... [more]
A0A536TMA2_9PROT2.330e-3050.39RidA family protein n=1 Tax=Betaproteobacteria bac... [more]
A0A3S2WCY6_9PROT5.000e-3050.39RidA family protein n=1 Tax=Hwanghaeella grinnelli... [more]
A0A2W4QSL9_9PROT6.500e-3050.39Enamine deaminase RidA n=1 Tax=Proteobacteria bact... [more]
A0A1F4DR78_9PROT9.490e-3048.44Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A0Q3I270_9HYPH5.280e-2948.41Enamine deaminase RidA n=2 Tax=Bosea TaxID=85413 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20104contigP-wetherbeei_contig20104:194..583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1380394.JADL01000008_gene3497
PFAMsRibonuc_L-PSP
Model size390
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.04e-33
EggNOG OGsCOG0251@1|root,COG0251@2|Bacteria,1RH8Y@1224|Proteobacteria,2U9P4@28211|Alphaproteobacteria,2JTWU@204441|Rhodospirillales
DescriptionEndoribonuclease L-PSP
Cds size390
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186191.0808196-CDS-P-wetherbeei_contig20104:193..5831683186191.0808196-CDS-P-wetherbeei_contig20104:193..583Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20104 194..583 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20104.1.1prot_P-wetherbeei_contig20104.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20104 194..583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20104.1.1

>prot_P-wetherbeei_contig20104.1.1 ID=prot_P-wetherbeei_contig20104.1.1|Name=mRNA_P-wetherbeei_contig20104.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MLKALNPATIAPPAGKYQLAVEVPAGARMLFISGQLGLKPDGTLAKGIEG
QADAVWANIKAILAEAGMSFADLVKVNILLIDAGDILPSRAARDRALGST
RPPASTLAVIKALAAPEYLIEIEAIAAKA*
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mRNA from alignment at P-wetherbeei_contig20104:194..583-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20104.1.1 ID=mRNA_P-wetherbeei_contig20104.1.1|Name=mRNA_P-wetherbeei_contig20104.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig20104:194..583- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGAAGGCCCTCAATCCCGCCACCATTGCCCCGCCCGCCGGGAAATA CCAGCTTGCCGTGGAGGTGCCCGCCGGCGCCCGGATGCTGTTCATTTCCG GCCAGCTCGGCCTGAAGCCCGACGGCACGCTCGCCAAGGGCATCGAAGGC CAGGCCGACGCGGTGTGGGCCAACATCAAGGCGATCCTCGCCGAGGCCGG CATGAGTTTCGCCGATCTCGTCAAGGTCAACATCCTGCTGATCGACGCCG GCGACATCTTGCCGAGCCGCGCGGCGCGCGACCGGGCGCTGGGCTCGACC CGCCCGCCGGCCTCCACACTTGCGGTGATCAAGGCGCTCGCCGCGCCCGA ATACCTGATCGAGATCGAGGCGATCGCGGCCAAGGCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20104:194..583-

>mRNA_P-wetherbeei_contig20104.1.1 ID=mRNA_P-wetherbeei_contig20104.1.1|Name=mRNA_P-wetherbeei_contig20104.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig20104:194..583- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGAAGGCCCTCAATCCCGCCACCATTGCCCCGCCCGCCGGGAAATA
CCAGCTTGCCGTGGAGGTGCCCGCCGGCGCCCGGATGCTGTTCATTTCCG
GCCAGCTCGGCCTGAAGCCCGACGGCACGCTCGCCAAGGGCATCGAAGGC
CAGGCCGACGCGGTGTGGGCCAACATCAAGGCGATCCTCGCCGAGGCCGG
CATGAGTTTCGCCGATCTCGTCAAGGTCAACATCCTGCTGATCGACGCCG
GCGACATCTTGCCGAGCCGCGCGGCGCGCGACCGGGCGCTGGGCTCGACC
CGCCCGCCGGCCTCCACACTTGCGGTGATCAAGGCGCTCGCCGCGCCCGA
ATACCTGATCGAGATCGAGGCGATCGCGGCCAAGGCATGA
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