mRNA_P-wetherbeei_contig20101.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20101.2.1
Unique NamemRNA_P-wetherbeei_contig20101.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20101.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20101contigP-wetherbeei_contig20101:56..1153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1100
Hectar predicted targeting categoryother localisation
Exons1
Cds size945
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186191.0293255-CDS-P-wetherbeei_contig20101:55..10001683186191.0293255-CDS-P-wetherbeei_contig20101:55..1000Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20101 56..1000 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186191.0395732-UTR-P-wetherbeei_contig20101:1000..11531683186191.0395732-UTR-P-wetherbeei_contig20101:1000..1153Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20101 1001..1153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20101.2.1prot_P-wetherbeei_contig20101.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20101 56..1000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20101.2.1

>prot_P-wetherbeei_contig20101.2.1 ID=prot_P-wetherbeei_contig20101.2.1|Name=mRNA_P-wetherbeei_contig20101.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=315bp
MRCSHCFTVYAELPLRLCAFRLPQRSIFAIFSELEFWHASHDRNHKRCAL
TWILDLRIIHAQPAIKRGPSKITTTHIHILINFERGSRNNSAGGPMRSWD
LPLFADFRLEPDESRLPFSAEQLTQIRMPSRHGGLGIVITAYIANAAFVG
SVLAAWAPAVHSLPLIAREALTEEACFGPLPWWRRCARLSVPSWPPPRRP
SWDESSQSLGSGWRPATTSQRMVKDVVGASGVTEPVAMVAAAVVTMDVLA
GGAALAMAARAAVRTAMRAAIPGAVADQVAAMGVAMTAASMQAVAAVHAA
GITLAAAAVGVAVVV
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mRNA from alignment at P-wetherbeei_contig20101:56..1153-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20101.2.1 ID=mRNA_P-wetherbeei_contig20101.2.1|Name=mRNA_P-wetherbeei_contig20101.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1098bp|location=Sequence derived from alignment at P-wetherbeei_contig20101:56..1153- (Phaeothamnion wetherbeei SAG_119_79)
TTGATACCACAGCAAAGCACACAGTCGGGAGTGTTGCGAAGTGACGAAAA
TCGAGTATTTTTCCACCACCGCCATCCACAAAGAGGAGGACAATTGTGGA
TGTGGGCCTGAAATTGGATTGGGAAGGCATTATTCTCCTCGCTTCTCTTA
TAAATGCGTTGTTCACACTGTTTTACAGTTTACGCCGAGCTGCCGCTCCG
CCTGTGTGCCTTCAGGCTCCCCCAGAGGTCAATTTTTGCCATTTTCTCAG
AACTGGAGTTTTGGCATGCCAGTCACGATAGGAACCACAAAAGGTGCGCA
CTTACATGGATCCTGGACCTTCGAATTATTCATGCGCAACCCGCTATCAA
AAGGGGTCCATCAAAGATCACCACCACTCACATTCACATCTTGATTAATT
TTGAACGAGGCAGTAGAAACAACAGTGCCGGCGGCCCCATGCGGTCGTGG
GATCTGCCGTTGTTCGCTGACTTCCGGCTTGAACCGGATGAGTCTCGCTT
GCCGTTTTCAGCCGAGCAGCTCACGCAGATCCGCATGCCCTCGCGTCACG
GCGGTCTCGGCATTGTCATCACAGCCTATATCGCGAATGCGGCCTTTGTG
GGCAGCGTGCTCGCCGCGTGGGCCCCGGCTGTCCACTCGCTCCCGCTGAT
CGCCCGCGAGGCCTTGACGGAGGAGGCCTGCTTCGGCCCGCTCCCATGGT
GGCGGCGTTGCGCTCGGCTCTCCGTGCCATCCTGGCCACCACCACGGCGG
CCCAGTTGGGACGAATCGTCCCAAAGTCTTGGGTCCGGGTGGCGGCCGGC
AACGACCAGCCAGAGGATGGTGAAAGACGTGGTGGGTGCGTCGGGCGTAA
CGGAGCCGGTGGCGATGGTCGCAGCGGCAGTGGTAACGATGGACGTCCTG
GCAGGCGGCGCGGCGTTGGCAATGGCGGCGCGTGCTGCGGTGAGAACCGC
GATGCGCGCGGCTATCCCTGGCGCCGTCGCCGACCAGGTGGCGGCGATGG
GCGTGGCGATGACAGCAGCATCGATGCAAGCAGTGGCAGCGGTGCACGCA
GCAGGCATCACCCTGGCAGCCGCAGCCGTAGGAGTGGCCGTGGTGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20101:56..1153-

>mRNA_P-wetherbeei_contig20101.2.1 ID=mRNA_P-wetherbeei_contig20101.2.1|Name=mRNA_P-wetherbeei_contig20101.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=945bp|location=Sequence derived from alignment at P-wetherbeei_contig20101:56..1153- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTTGTTCACACTGTTTTACAGTTTACGCCGAGCTGCCGCTCCGCCT
GTGTGCCTTCAGGCTCCCCCAGAGGTCAATTTTTGCCATTTTCTCAGAAC
TGGAGTTTTGGCATGCCAGTCACGATAGGAACCACAAAAGGTGCGCACTT
ACATGGATCCTGGACCTTCGAATTATTCATGCGCAACCCGCTATCAAAAG
GGGTCCATCAAAGATCACCACCACTCACATTCACATCTTGATTAATTTTG
AACGAGGCAGTAGAAACAACAGTGCCGGCGGCCCCATGCGGTCGTGGGAT
CTGCCGTTGTTCGCTGACTTCCGGCTTGAACCGGATGAGTCTCGCTTGCC
GTTTTCAGCCGAGCAGCTCACGCAGATCCGCATGCCCTCGCGTCACGGCG
GTCTCGGCATTGTCATCACAGCCTATATCGCGAATGCGGCCTTTGTGGGC
AGCGTGCTCGCCGCGTGGGCCCCGGCTGTCCACTCGCTCCCGCTGATCGC
CCGCGAGGCCTTGACGGAGGAGGCCTGCTTCGGCCCGCTCCCATGGTGGC
GGCGTTGCGCTCGGCTCTCCGTGCCATCCTGGCCACCACCACGGCGGCCC
AGTTGGGACGAATCGTCCCAAAGTCTTGGGTCCGGGTGGCGGCCGGCAAC
GACCAGCCAGAGGATGGTGAAAGACGTGGTGGGTGCGTCGGGCGTAACGG
AGCCGGTGGCGATGGTCGCAGCGGCAGTGGTAACGATGGACGTCCTGGCA
GGCGGCGCGGCGTTGGCAATGGCGGCGCGTGCTGCGGTGAGAACCGCGAT
GCGCGCGGCTATCCCTGGCGCCGTCGCCGACCAGGTGGCGGCGATGGGCG
TGGCGATGACAGCAGCATCGATGCAAGCAGTGGCAGCGGTGCACGCAGCA
GGCATCACCCTGGCAGCCGCAGCCGTAGGAGTGGCCGTGGTGGTG
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