mRNA_P-wetherbeei_contig20086.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20086.2.1
Unique NamemRNA_P-wetherbeei_contig20086.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20086.2.1 vs. uniprot
Match: UPI0019857874 (AAA family ATPase n=1 Tax=Rhodoferax sp. TaxID=50421 RepID=UPI0019857874)

HSP 1 Score: 127 bits (319), Expect = 1.970e-32
Identity = 62/79 (78.48%), Postives = 73/79 (92.41%), Query Frame = 1 
Query:    1 MVAECEAQIARIGNDKLYIGHGRALLGTIAIRRGQFERAHELLVDSLAMYRAVESNFDIAGSLAQQGFLALRRKDPAQA 237
            MVAECE +IA+IG+DKLYIGHGRALLGTIAIRRG F+RA++LL +SL +YRAVES FDIAGSLAQQGFLALR+ +PA+A
Sbjct:  526 MVAECEVEIAKIGSDKLYIGHGRALLGTIAIRRGDFQRANQLLTESLDLYRAVESKFDIAGSLAQQGFLALRQNEPARA 604
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BLAST of mRNA_P-wetherbeei_contig20086.2.1 vs. uniprot
Match: UPI0019B66E1F (Winged helix-turn-helix domain-containing protein n=1 Tax=Rhizobacter sp. TaxID=1909292 RepID=UPI0019B66E1F)

HSP 1 Score: 113 bits (282), Expect = 2.140e-27
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:    1 MVAECEAQIARIGNDKLYIGHGRALLGTIAIRRGQFERAHELLVDSLAMYRAVESNFDIAGSLAQQG 201
            MVAECEA++A+IG DKLYIGHGRALLGTIAIRRG FERA +LL +SLA+YR+VES FDIAGSLAQQG
Sbjct:  675 MVAECEAEMAKIGGDKLYIGHGRALLGTIAIRRGHFERASQLLTESLALYRSVESKFDIAGSLAQQG 741
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BLAST of mRNA_P-wetherbeei_contig20086.2.1 vs. uniprot
Match: UPI0019939AA6 (Uncharacterized protein n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=UPI0019939AA6)

HSP 1 Score: 81.6 bits (200), Expect = 8.610e-18
Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:    1 MVAECEAQIARIGNDKLYIGHGRALLGTIAIRRGQFERAHELLVDSLAMYRAVESNFDIAGSLAQQGFLALRRKDPAQA 237
            ++ +CE +   +G D LY+GH  AL G IA+RRG  +RA+++  D L +YR ++S FD+AG L+QQG LALRR   A A
Sbjct:   31 LLRDCETETQVLGGDPLYLGHCCALRGNIAVRRGDLDRANDMPADGLLLYRKIDSQFDVAGILSQQGLLALRRGGAAAA 109
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20086.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI00198578741.970e-3278.48AAA family ATPase n=1 Tax=Rhodoferax sp. TaxID=504... [more]
UPI0019B66E1F2.140e-2782.09Winged helix-turn-helix domain-containing protein ... [more]
UPI0019939AA68.610e-1848.10Uncharacterized protein n=1 Tax=Chitinophagaceae b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20086contigP-wetherbeei_contig20086:935..1171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size237
Hectar predicted targeting categoryother localisation
Exons1
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186190.2933116-CDS-P-wetherbeei_contig20086:934..11711683186190.2933116-CDS-P-wetherbeei_contig20086:934..1171Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20086 935..1171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20086.2.1prot_P-wetherbeei_contig20086.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20086 935..1171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20086.2.1

>prot_P-wetherbeei_contig20086.2.1 ID=prot_P-wetherbeei_contig20086.2.1|Name=mRNA_P-wetherbeei_contig20086.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
MVAECEAQIARIGNDKLYIGHGRALLGTIAIRRGQFERAHELLVDSLAMY
RAVESNFDIAGSLAQQGFLALRRKDPAQA
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mRNA from alignment at P-wetherbeei_contig20086:935..1171+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20086.2.1 ID=mRNA_P-wetherbeei_contig20086.2.1|Name=mRNA_P-wetherbeei_contig20086.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig20086:935..1171+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGCCGAATGCGAGGCGCAGATCGCTCGGATTGGAAACGACAAGCT
CTACATCGGCCACGGCCGCGCGCTCTTAGGCACCATTGCCATTCGCCGCG
GCCAGTTCGAGCGCGCACATGAATTGCTGGTGGATAGCCTCGCAATGTAC
CGCGCGGTGGAATCGAACTTTGACATTGCCGGCAGCCTCGCGCAGCAGGG
TTTCTTGGCGCTGCGCCGCAAGGATCCAGCACAGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20086:935..1171+

>mRNA_P-wetherbeei_contig20086.2.1 ID=mRNA_P-wetherbeei_contig20086.2.1|Name=mRNA_P-wetherbeei_contig20086.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig20086:935..1171+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGCCGAATGCGAGGCGCAGATCGCTCGGATTGGAAACGACAAGCT
CTACATCGGCCACGGCCGCGCGCTCTTAGGCACCATTGCCATTCGCCGCG
GCCAGTTCGAGCGCGCACATGAATTGCTGGTGGATAGCCTCGCAATGTAC
CGCGCGGTGGAATCGAACTTTGACATTGCCGGCAGCCTCGCGCAGCAGGG
TTTCTTGGCGCTGCGCCGCAAGGATCCAGCACAGGCG
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