mRNA_P-wetherbeei_contig2008.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2008.2.1
Unique NamemRNA_P-wetherbeei_contig2008.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2008.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2008contigP-wetherbeei_contig2008:5320..5987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size486
Hectar predicted targeting categoryother localisation
Exons2
Cds size273
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186190.0707812-UTR-P-wetherbeei_contig2008:5319..53241683186190.0707812-UTR-P-wetherbeei_contig2008:5319..5324Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2008 5320..5324 +
1683186190.101553-UTR-P-wetherbeei_contig2008:5779..59871683186190.101553-UTR-P-wetherbeei_contig2008:5779..5987Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2008 5780..5987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186190.0819638-CDS-P-wetherbeei_contig2008:5324..54071683186190.0819638-CDS-P-wetherbeei_contig2008:5324..5407Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2008 5325..5407 +
1683186190.0918667-CDS-P-wetherbeei_contig2008:5589..57791683186190.0918667-CDS-P-wetherbeei_contig2008:5589..5779Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2008 5590..5779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2008.2.1prot_P-wetherbeei_contig2008.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2008 5325..5779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2008.2.1

>prot_P-wetherbeei_contig2008.2.1 ID=prot_P-wetherbeei_contig2008.2.1|Name=mRNA_P-wetherbeei_contig2008.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
MENGSSNACDSCTKEGAEKKSGRCGQPSYCNDGCHASGWRGHRPACRQRG
EGSAPSASAVPTVSTPTDRDAEPPASLGLTAGRFTCFLVA*
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mRNA from alignment at P-wetherbeei_contig2008:5320..5987+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2008.2.1 ID=mRNA_P-wetherbeei_contig2008.2.1|Name=mRNA_P-wetherbeei_contig2008.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=668bp|location=Sequence derived from alignment at P-wetherbeei_contig2008:5320..5987+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCGATGGAAAACGGCTCCTCAAATGCATGTGATTCTTGCACGAAAGAG
GGAGCCGAGAAGAAGAGTGGCCGCTGCGGGCAACCCTCGTAAGTCCGCTC
TTTCTCTGTCCCTTCTGCAGCCCGCCATGGGCTTGAATGAGCCACTCATC
ATCGCTTGAATGAGCCATTCATCATCATTGTGGACGTACCTCAACGAACT
CCCCTCTTCTTCCTTTGTTGCTTTTCTTCGTTCTTCTGGATGCTGGCTCC
TCCATTGTCTCCTCTTCCAGCTACTGCAATGACGGATGTCACGCGTCGGG
CTGGCGGGGCCACCGGCCGGCGTGCCGGCAACGCGGGGAGGGCAGCGCGC
CCTCCGCCTCTGCGGTTCCCACAGTTTCAACTCCGACCGACCGGGACGCG
GAACCTCCGGCTTCGTTAGGGTTAACGGCCGGGCGCTTTACGTGTTTCTT
GGTGGCATGATCCGAGCAGGTAGGCTCGTGAACTTCCTAGACGACATTTA
CTCTCCAAATCTTTCCTCACCCTTGTTTTCTTGAAGGGTATTTGAGTTGC
ACCGCTGCTCACACGCCTCACTTTCCCGAAAATGCCGAAGGCTCTCTTCT
GCAGGTTCCCTTCGTCTAAGCCCGCCGGACGTTCAGGTCCCTGCTTCGTT
CCAACTGACCCTCCTCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2008:5320..5987+

>mRNA_P-wetherbeei_contig2008.2.1 ID=mRNA_P-wetherbeei_contig2008.2.1|Name=mRNA_P-wetherbeei_contig2008.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig2008:5320..5987+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAAACGGCTCCTCAAATGCATGTGATTCTTGCACGAAAGAGGGAGC
CGAGAAGAAGAGTGGCCGCTGCGGGCAACCCTCCTACTGCAATGACGGAT
GTCACGCGTCGGGCTGGCGGGGCCACCGGCCGGCGTGCCGGCAACGCGGG
GAGGGCAGCGCGCCCTCCGCCTCTGCGGTTCCCACAGTTTCAACTCCGAC
CGACCGGGACGCGGAACCTCCGGCTTCGTTAGGGTTAACGGCCGGGCGCT
TTACGTGTTTCTTGGTGGCATGA
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