mRNA_P-wetherbeei_contig20064.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20064.1.1
Unique NamemRNA_P-wetherbeei_contig20064.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20064.1.1 vs. uniprot
Match: D8LIP7_ECTSI (DEAD box helicase DEAD/DEAH box helicase-like protein (Partial) (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIP7_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 1.700e-43
Identity = 78/116 (67.24%), Postives = 97/116 (83.62%), Query Frame = 1 
Query:    7 LFSGGGRPQPATGRAPQAIVLAPTRELAKQVEREFQRIAPNVATLAMYGGTPQGPQLGALRRGVDVVVGTPGRVIDHLQQGSLHLGEVKFAVLDEADMMLQMGFQEDVETILKYLP 354
            LFS G     A GR P+AI +APTRELAKQVEREF RIAP +++LA+YGGT QGPQ+G +RRGVD++VGTPGR+IDH++QG+L+L E++F VLDEAD+MLQMGFQE VE I K +P
Sbjct:  268 LFSRG-----AYGRFPRAICVAPTRELAKQVEREFNRIAPELSSLAVYGGTAQGPQIGEMRRGVDIIVGTPGRIIDHIEQGNLNLSEIQFCVLDEADLMLQMGFQEPVEEIFKEMP 378
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BLAST of mRNA_P-wetherbeei_contig20064.1.1 vs. uniprot
Match: A0A6L2KYC5_TANCI (DEAD-box ATP-dependent RNA helicase 53-like n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2KYC5_TANCI)

HSP 1 Score: 144 bits (364), Expect = 3.000e-38
Identity = 73/104 (70.19%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:   43 GRAPQAIVLAPTRELAKQVEREFQRIAPNVATLAMYGGTPQGPQLGALRRGVDVVVGTPGRVIDHLQQGSLHLGEVKFAVLDEADMMLQMGFQEDVETILKYLP 354
            GR PQAIVLAPTRELAKQVE+EF   APN++TL +YGG P   Q+  L  GVDV+VGTPGRVID L++GSL+L EV+FAVLDEAD ML +GF +DVETIL+YLP
Sbjct:  168 GRNPQAIVLAPTRELAKQVEKEFHEAAPNLSTLCVYGGVPIQRQMSTLDYGVDVLVGTPGRVIDLLKRGSLNLSEVQFAVLDEADQMLNVGFADDVETILEYLP 271
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BLAST of mRNA_P-wetherbeei_contig20064.1.1 vs. uniprot
Match: A0A5N6PQA3_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PQA3_9ASTR)

HSP 1 Score: 143 bits (361), Expect = 6.650e-38
Identity = 72/104 (69.23%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:   43 GRAPQAIVLAPTRELAKQVEREFQRIAPNVATLAMYGGTPQGPQLGALRRGVDVVVGTPGRVIDHLQQGSLHLGEVKFAVLDEADMMLQMGFQEDVETILKYLP 354
            GR P AIV+APTRELA+QVE+EF   APN+ TL +YGG+P   Q+  L RGVDV+VGTPGRVID L++G+L+L EVKFAVLDEAD ML +GF EDVETIL+YLP
Sbjct:  172 GRNPLAIVMAPTRELARQVEKEFYESAPNLDTLCVYGGSPIQRQMSTLDRGVDVIVGTPGRVIDLLKRGALNLSEVKFAVLDEADQMLNVGFAEDVETILEYLP 275
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BLAST of mRNA_P-wetherbeei_contig20064.1.1 vs. uniprot
Match: A0A5N6LLE5_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LLE5_9ASTR)

HSP 1 Score: 144 bits (362), Expect = 7.040e-38
Identity = 72/104 (69.23%), Postives = 87/104 (83.65%), Query Frame = 1 
Query:   43 GRAPQAIVLAPTRELAKQVEREFQRIAPNVATLAMYGGTPQGPQLGALRRGVDVVVGTPGRVIDHLQQGSLHLGEVKFAVLDEADMMLQMGFQEDVETILKYLP 354
            GR P AIV+APTRELA+QVE+EF   APN+ TL +YGG+P   Q+ +L RGVDV+VGTPGRVID L++G+L+L EVKFAVLDEAD ML +GF EDVETIL+YLP
Sbjct:  169 GRNPLAIVMAPTRELARQVEKEFYESAPNLDTLCVYGGSPIQRQMSSLDRGVDVIVGTPGRVIDLLKRGALNLSEVKFAVLDEADQMLNVGFAEDVETILEYLP 272
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BLAST of mRNA_P-wetherbeei_contig20064.1.1 vs. uniprot
Match: F2D6U8_HORVV (Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2D6U8_HORVV)

HSP 1 Score: 136 bits (342), Expect = 9.100e-38
Identity = 68/107 (63.55%), Postives = 82/107 (76.64%), Query Frame = 1 
Query:   34 PATGRAPQAIVLAPTRELAKQVEREFQRIAPNVATLAMYGGTPQGPQLGALRRGVDVVVGTPGRVIDHLQQGSLHLGEVKFAVLDEADMMLQMGFQEDVETILKYLP 354
            P  GR P+A+VLAPTRELAKQVE+E    AP ++T+ +YGG     Q  AL RGVDVVVGTPGR+ID +  GSL LGEV++ VLDEAD ML +GF+EDVETIL+ LP
Sbjct:   61 PGRGRIPRALVLAPTRELAKQVEKEIMESAPKLSTVCVYGGVSYNTQQNALSRGVDVVVGTPGRLIDLINGGSLQLGEVRYLVLDEADQMLAVGFEEDVETILQQLP 167
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BLAST of mRNA_P-wetherbeei_contig20064.1.1 vs. uniprot
Match: UPI000B8F8E37 (DEAD-box ATP-dependent RNA helicase 53, mitochondrial n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI000B8F8E37)

HSP 1 Score: 143 bits (361), Expect = 9.520e-38
Identity = 72/104 (69.23%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:   43 GRAPQAIVLAPTRELAKQVEREFQRIAPNVATLAMYGGTPQGPQLGALRRGVDVVVGTPGRVIDHLQQGSLHLGEVKFAVLDEADMMLQMGFQEDVETILKYLP 354
            GR P AIV+APTRELA+QVE+EF   APN+ TL +YGG+P   Q+  L RGVDV+VGTPGRVID L++G+L+L EVKFAVLDEAD ML +GF EDVETIL+YLP
Sbjct:  172 GRNPLAIVMAPTRELARQVEKEFYESAPNLDTLCVYGGSPIQRQMSTLDRGVDVIVGTPGRVIDLLKRGALNLSEVKFAVLDEADQMLNVGFAEDVETILEYLP 275
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BLAST of mRNA_P-wetherbeei_contig20064.1.1 vs. uniprot
Match: A0A5K1DCE7_9MAGN (Helicase ATP-binding domain-containing protein (Fragment) n=10 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1DCE7_9MAGN)

HSP 1 Score: 133 bits (334), Expect = 1.040e-37
Identity = 67/105 (63.81%), Postives = 81/105 (77.14%), Query Frame = 1 
Query:   40 TGRAPQAIVLAPTRELAKQVEREFQRIAPNVATLAMYGGTPQGPQLGALRRGVDVVVGTPGRVIDHLQQGSLHLGEVKFAVLDEADMMLQMGFQEDVETILKYLP 354
            +GR P+A+VLAPTRELA+QVE+E Q  AP + T+ +YGG     Q  AL RGVDVVVGTPGR+ID +  GSL LGEVK+ VLDEAD ML +GF+EDVE IL+ LP
Sbjct:    2 SGRLPRALVLAPTRELARQVEKEIQESAPYLKTVCVYGGVSYNVQQNALTRGVDVVVGTPGRLIDLINSGSLQLGEVKYLVLDEADQMLAVGFEEDVEVILEKLP 106
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BLAST of mRNA_P-wetherbeei_contig20064.1.1 vs. uniprot
Match: A0A251UNT7_HELAN (Putative helicase Cas3, CRISPR-associated, core n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UNT7_HELAN)

HSP 1 Score: 143 bits (361), Expect = 1.080e-37
Identity = 72/104 (69.23%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:   43 GRAPQAIVLAPTRELAKQVEREFQRIAPNVATLAMYGGTPQGPQLGALRRGVDVVVGTPGRVIDHLQQGSLHLGEVKFAVLDEADMMLQMGFQEDVETILKYLP 354
            GR P AIV+APTRELA+QVE+EF   APN+ TL +YGG+P   Q+  L RGVDV+VGTPGRVID L++G+L+L EVKFAVLDEAD ML +GF EDVETIL+YLP
Sbjct:  172 GRNPLAIVMAPTRELARQVEKEFYESAPNLDTLCVYGGSPIQRQMSTLDRGVDVIVGTPGRVIDLLKRGALNLSEVKFAVLDEADQMLNVGFAEDVETILEYLP 275
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BLAST of mRNA_P-wetherbeei_contig20064.1.1 vs. uniprot
Match: A0A103XTH7_CYNCS (DNA/RNA helicase, DEAD/DEAH box type, N-terminal n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103XTH7_CYNCS)

HSP 1 Score: 143 bits (360), Expect = 1.400e-37
Identity = 72/104 (69.23%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:   43 GRAPQAIVLAPTRELAKQVEREFQRIAPNVATLAMYGGTPQGPQLGALRRGVDVVVGTPGRVIDHLQQGSLHLGEVKFAVLDEADMMLQMGFQEDVETILKYLP 354
            GR P AIVLAPTRELA+QVE+EF   APN+ TL +YGG+P   Q+  L RGVDV+VGTPGRVID L++G+L+L EVKFAVLDEAD ML +GF +DVETIL+YLP
Sbjct:  172 GRNPLAIVLAPTRELARQVEKEFYESAPNLDTLCVYGGSPIQRQMSTLDRGVDVIVGTPGRVIDLLKRGALNLSEVKFAVLDEADQMLNVGFADDVETILEYLP 275
[Close]
BLAST of mRNA_P-wetherbeei_contig20064.1.1 vs. uniprot
Match: A0A251S007_HELAN (Putative DEAD-box ATP-dependent RNA helicase 53 n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251S007_HELAN)

HSP 1 Score: 142 bits (358), Expect = 1.930e-37
Identity = 72/104 (69.23%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:   43 GRAPQAIVLAPTRELAKQVEREFQRIAPNVATLAMYGGTPQGPQLGALRRGVDVVVGTPGRVIDHLQQGSLHLGEVKFAVLDEADMMLQMGFQEDVETILKYLP 354
            GR P AIV+APTRELAKQVE+EF   APN+ATL +YGG+P   Q+  L RGVDV+VGTPGRVID L++G+L+L EV+FAVLDEAD ML +GF E VETIL+YLP
Sbjct:  173 GRNPLAIVMAPTRELAKQVEKEFYESAPNLATLCVYGGSPIQRQMSTLDRGVDVIVGTPGRVIDLLKRGALNLSEVQFAVLDEADQMLNVGFAEAVETILEYLP 276
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20064.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIP7_ECTSI1.700e-4367.24DEAD box helicase DEAD/DEAH box helicase-like prot... [more]
A0A6L2KYC5_TANCI3.000e-3870.19DEAD-box ATP-dependent RNA helicase 53-like n=1 Ta... [more]
A0A5N6PQA3_9ASTR6.650e-3869.23Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A5N6LLE5_9ASTR7.040e-3869.23Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
F2D6U8_HORVV9.100e-3863.55Predicted protein n=1 Tax=Hordeum vulgare subsp. v... [more]
UPI000B8F8E379.520e-3869.23DEAD-box ATP-dependent RNA helicase 53, mitochondr... [more]
A0A5K1DCE7_9MAGN1.040e-3763.81Helicase ATP-binding domain-containing protein (Fr... [more]
A0A251UNT7_HELAN1.080e-3769.23Putative helicase Cas3, CRISPR-associated, core n=... [more]
A0A103XTH7_CYNCS1.400e-3769.23DNA/RNA helicase, DEAD/DEAH box type, N-terminal n... [more]
A0A251S007_HELAN1.930e-3769.23Putative DEAD-box ATP-dependent RNA helicase 53 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20064contigP-wetherbeei_contig20064:22..915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LIP7
PFAMsDEAD,Helicase_C
Model size354
Max annot lvl2759|Eukaryota
KEGG koko:K16911
KEGG Pathwayko01110,map01110
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.79e-44
EggNOG OGsCOG0513@1|root,KOG0331@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size354
COG categoryL
BRITEko00000,ko01000,ko03009,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186189.9027092-CDS-P-wetherbeei_contig20064:21..1141683186189.9027092-CDS-P-wetherbeei_contig20064:21..114Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20064 22..114 -
1683186189.911467-CDS-P-wetherbeei_contig20064:360..5251683186189.911467-CDS-P-wetherbeei_contig20064:360..525Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20064 361..525 -
1683186189.9190361-CDS-P-wetherbeei_contig20064:819..9151683186189.9190361-CDS-P-wetherbeei_contig20064:819..915Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20064 820..915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20064.1.1prot_P-wetherbeei_contig20064.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20064 22..915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20064.1.1

>prot_P-wetherbeei_contig20064.1.1 ID=prot_P-wetherbeei_contig20064.1.1|Name=mRNA_P-wetherbeei_contig20064.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
GGLFSGGGRPQPATGRAPQAIVLAPTRELAKQVEREFQRIAPNVATLAMY
GGTPQGPQLGALRRGVDVVVGTPGRVIDHLQQGSLHLGEVKFAVLDEADM
MLQMGFQEDVETILKYLP
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mRNA from alignment at P-wetherbeei_contig20064:22..915-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20064.1.1 ID=mRNA_P-wetherbeei_contig20064.1.1|Name=mRNA_P-wetherbeei_contig20064.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=894bp|location=Sequence derived from alignment at P-wetherbeei_contig20064:22..915- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCTTGTTTTCGGGCGGGGGTCGGCCGCAGCCGGCGACGGGGCGGGC
GCCGCAGGCCATCGTGCTGGCGCCAACACGCGAGCTCGCCAAGCAGGTGC
GTGCGTGTTGGTCATGGGAGGGAAAGACTGGCCGCAACCCAACCGGGAGG
CAAACGTGACCCCTTGTCGAAGTCTGGCAGCACATTTATCGTTACTGTGC
TTCTGCGGGGATGTCCCGTTCTGGGTCTCCGTGCCCTGCTCGTACGCTCC
CTAAAATCGCTTTCTTCGCGCTTAGAGCTCTAGACCGTTTGACGCCCCGC
CGTTCTCTTCAGGCGAAAAGTACCTCAACATGATTCTTCTCCTTGTAACT
GCTGGCAGTTTTTCATCCACCTCTGCTCGCTTGCTGGCAGGTGGAGCGCG
AGTTCCAGCGGATCGCCCCGAATGTGGCGACGCTGGCAATGTACGGCGGC
ACGCCACAGGGGCCACAGCTGGGGGCGCTGCGGCGGGGCGTGGACGTCGT
GGTCGGAACGCCCGGCCGTGTCATCGACCACCTGCAGCAAGGCTCGCTCC
ACCTGGTACGTCCCTTTTCTTTTTCCTGGCGTGACTTACGCTTACGGTGC
AGATCTAAGTTTGTTGGTTTTCTAACTTCGGTTTTTCTTTTCTTTTTCGC
CATCCCTTTTCCTCCTTGAGCCGGCTTCTCTCATGGGAACCACTATTTTG
CTGCGGCGGCGGCGCTTCGACGGCGGTGGTGGTTGCTTCCGGCGCTAACG
CCACTTTCGGCCGGTTCTGGCGGTTTCGCACGCTTACAACAATGGCAACA
GGGGGAGGTGAAGTTTGCGGTCCTGGACGAAGCCGACATGATGCTGCAGA
TGGGCTTTCAGGAGGACGTCGAGACCATCCTGAAGTACCTCCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20064:22..915-

>mRNA_P-wetherbeei_contig20064.1.1 ID=mRNA_P-wetherbeei_contig20064.1.1|Name=mRNA_P-wetherbeei_contig20064.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig20064:22..915- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCTTGTTTTCGGGCGGGGGTCGGCCGCAGCCGGCGACGGGGCGGGC
GCCGCAGGCCATCGTGCTGGCGCCAACACGCGAGCTCGCCAAGCAGGTGG
AGCGCGAGTTCCAGCGGATCGCCCCGAATGTGGCGACGCTGGCAATGTAC
GGCGGCACGCCACAGGGGCCACAGCTGGGGGCGCTGCGGCGGGGCGTGGA
CGTCGTGGTCGGAACGCCCGGCCGTGTCATCGACCACCTGCAGCAAGGCT
CGCTCCACCTGGGGGAGGTGAAGTTTGCGGTCCTGGACGAAGCCGACATG
ATGCTGCAGATGGGCTTTCAGGAGGACGTCGAGACCATCCTGAAGTACCT
CCCG
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