mRNA_P-wetherbeei_contig2005.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2005.3.1
Unique NamemRNA_P-wetherbeei_contig2005.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2005.3.1 vs. uniprot
Match: A0A1E3W3R7_9HYPH (DNA_binding_1 domain-containing protein n=1 Tax=Methyloceanibacter superfactus TaxID=1774969 RepID=A0A1E3W3R7_9HYPH)

HSP 1 Score: 155 bits (393), Expect = 2.980e-44
Identity = 83/164 (50.61%), Postives = 108/164 (65.85%), Query Frame = 1
Query:    1 IEFVCTSSRVGTVLVASSAAGERAACAILLGDNATTLREDLERLFPRAELRASKDEIGGLLKQVVSHINN-ACGSELPKLDIRGTPFQKRVWAELSNVPAGTTTTYAAIARAIGAPRAVRAVXXXXXXNRLAVAVPCHRAILSTGGLSGYRWGTDRKRALLLAE 489
            I +V +S  +G++LVA+S   ++  CAILLGD+  TL  DL R FPRA + A  ++   L  +++ H+   + G ++P LDIRGT FQ RVW  L  +PAGTT +Y  IA+AIGAP + RAV      NRLAVA+PCHR +   G LSGYRWG DRKRALL  E
Sbjct:    8 ISYVVSSCSLGSILVAAS---DKGVCAILLGDDVETLLADLRRQFPRAAIGAGDEDFAALAAKMIDHVETPSVGLDVP-LDIRGTAFQHRVWDALRRIPAGTTASYTDIAKAIGAPTSARAVAGACAANRLAVAIPCHRVVRGDGSLSGYRWGVDRKRALLAKE 167          
BLAST of mRNA_P-wetherbeei_contig2005.3.1 vs. uniprot
Match: UPI0018DFAD45 (bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada n=1 Tax=Roseomonas sp. KE0001 TaxID=2479201 RepID=UPI0018DFAD45)

HSP 1 Score: 154 bits (390), Expect = 1.570e-41
Identity = 89/167 (53.29%), Postives = 105/167 (62.87%), Query Frame = 1
Query:    1 IEFVCTSSRVGTVLVASSAAGERAACAILLGDNATTLREDLERLFPRAELRASKDEIGGLLKQVVSHINN-ACGSELPKLDIRGTPFQKRVWAELSNVPAGTTTTYAAIARAIGAPRAVRAVXXXXXXNRLAVAVPCHRAILSTGGLSGYRWGTDRKRALLLAEGVK 498
            I F  T   +G +LVA+S   +R  CAILLGD    LREDL R FPRA LR  +   G L+ QVV+ I     G +LP LD+RGT FQ+RVW  L  +PAG T +YA +A  IGAP A RAV      N LAVA+PCHR +   GGLSGYRWG  RKRALL  EG +
Sbjct:  198 IRFATTRCSLGALLVAAS---DRGVCAILLGDAPEALREDLGRRFPRAALREGEAGFGALVAQVVALIEAPGLGHDLP-LDLRGTTFQQRVWQALRQIPAGRTESYAEVAARIGAPGAARAVARACAGNALAVAIPCHRVVRGDGGLSGYRWGAPRKRALLEREGAR 360          
BLAST of mRNA_P-wetherbeei_contig2005.3.1 vs. uniprot
Match: UPI001C31AB18 (methylated-DNA--[protein]-cysteine S-methyltransferase n=1 Tax=Pseudomonas sp. MAP12 TaxID=2849492 RepID=UPI001C31AB18)

HSP 1 Score: 148 bits (374), Expect = 2.430e-41
Identity = 86/164 (52.44%), Postives = 105/164 (64.02%), Query Frame = 1
Query:    1 IEFVCTSSRVGTVLVASSAAGERAACAILLGDNATTLREDLERLFPRAELRASKDEIGGLLKQVVSHINNAC-GSELPKLDIRGTPFQKRVWAELSNVPAGTTTTYAAIARAIGAPRAVRAVXXXXXXNRLAVAVPCHRAILSTGGLSGYRWGTDRKRALLLAE 489
            I F      +G +LVA S   ER  CAILLGD A  L ++L+  FPR+E R  +  +  LL QVV+ +     G +LP LD+RGT FQ+RVW  L  +PAG+T +YA +A  IGAPRAVRAV      N LAVA+PCHR + S GGLSGYRWG  RKRALL  E
Sbjct:   13 IRFASGHCALGALLVAQS---ERGLCAILLGDEAAALADELQARFPRSERREDQAGLAALLAQVVAFVEAPQRGLDLP-LDLRGTAFQQRVWQALREIPAGSTLSYAELAVRIGAPRAVRAVAGACAANALAVAIPCHRVLRSDGGLSGYRWGVARKRALLERE 172          
BLAST of mRNA_P-wetherbeei_contig2005.3.1 vs. uniprot
Match: UPI00199E45CE (Methylated-DNA--[protein]-cysteine S-methyltransferase n=1 Tax=Methyloceanibacter sp. TaxID=1965321 RepID=UPI00199E45CE)

HSP 1 Score: 146 bits (369), Expect = 1.460e-40
Identity = 82/164 (50.00%), Postives = 106/164 (64.63%), Query Frame = 1
Query:    1 IEFVCTSSRVGTVLVASSAAGERAACAILLGDNATTLREDLERLFPRAELRASKDEIGGLLKQVVSHINN-ACGSELPKLDIRGTPFQKRVWAELSNVPAGTTTTYAAIARAIGAPRAVRAVXXXXXXNRLAVAVPCHRAILSTGGLSGYRWGTDRKRALLLAE 489
            I+F      +G VLVA+S   E   CAIL GD+A +LR+DL++ FPRA L    +    L  +V+  +     G +LP LD+RGT FQ RVW  L  +PAG T +YA IA+AIGAP++VRAV      NR+AVA+PCHR + S G LSGYR G +RKRALL+ E
Sbjct:   15 IKFAVGECSLGVVLVAAS---EMGVCAILFGDDAESLRDDLKKQFPRARLVGGDEAFEALTTKVIDFVEAPGRGLDLP-LDVRGTAFQHRVWDALRRIPAGATASYAEIAKAIGAPKSVRAVARACASNRIAVAIPCHRVVASDGSLSGYRGGVERKRALLVKE 174          
BLAST of mRNA_P-wetherbeei_contig2005.3.1 vs. uniprot
Match: A0A7X7JLU1_9DELT (Bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7X7JLU1_9DELT)

HSP 1 Score: 151 bits (382), Expect = 2.370e-40
Identity = 83/150 (55.33%), Postives = 101/150 (67.33%), Query Frame = 1
Query:   31 GTVLVASSAAGERAACAILLGDNATTLREDLERLFPRAELRASKDEIGGLLKQVVSHINNACGSELPKLDIRGTPFQKRVWAELSNVPAGTTTTYAAIARAIGAPRAVRAVXXXXXXNRLAVAVPCHRAILSTGGLSGYRWGTDRKRALL 480
            G++LVA++   ER  CAILLGD+   L  DLER FPRAEL A   E  G++ +VV+ +          LD+RGT FQ+RVW  L  +PAG+T+TY  IARAIGAP AVRAV      N LAVA+PCHR +   GGLSGYRWG +RKRALL
Sbjct:  216 GSILVAAT---ERGVCAILLGDDPEGLLHDLERRFPRAELIAGDAEFEGIVARVVALVECPGMDASIPLDVRGTAFQQRVWEALRRIPAGSTSTYTEIARAIGAPAAVRAVAGACAANPLAVAIPCHRVVRKGGGLSGYRWGIERKRALL 362          
BLAST of mRNA_P-wetherbeei_contig2005.3.1 vs. uniprot
Match: A0A839P8M9_9HYPH (AraC family transcriptional regulator of adaptative response/methylated-DNA-[protein]-cysteine methyltransferase n=1 Tax=Methylobacterium sp. R2-1 TaxID=2587064 RepID=A0A839P8M9_9HYPH)

HSP 1 Score: 151 bits (381), Expect = 2.860e-40
Identity = 90/167 (53.89%), Postives = 104/167 (62.28%), Query Frame = 1
Query:    1 IEFVCTSSRVGTVLVASSAAGERAACAILLGDNATTLREDLERLFPRAELRASKDEIGGLLKQVVSHINNACGS-ELPKLDIRGTPFQKRVWAELSNVPAGTTTTYAAIARAIGAPRAVRAVXXXXXXNRLAVAVPCHRAILSTGGLSGYRWGTDRKRALLLAEGVK 498
            I F      +G VLVA++   ER  CAILLGD+A  LR DL   FP+A+L     +    +  VV  +    G+ ELP LDI GT FQ+RVW  L  +PAGTT TYA IARAIG P AVRAV      N LAVA+PCHR + S G LSGYRWGT RK ALL  EGVK
Sbjct:  198 IAFATGPCALGLVLVAAT---ERGICAILLGDDADALRSDLAARFPKADLTEGDADFAATVADVVRLVAAPGGAFELP-LDIGGTAFQQRVWQALRRIPAGTTATYAEIARAIGEPAAVRAVAMACGANALAVAIPCHRVVRSDGALSGYRWGTARKTALLAREGVK 360          
BLAST of mRNA_P-wetherbeei_contig2005.3.1 vs. uniprot
Match: A0A553H0W6_9PSED (Bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada n=1 Tax=Pseudomonas mangiferae TaxID=2593654 RepID=A0A553H0W6_9PSED)

HSP 1 Score: 150 bits (380), Expect = 3.760e-40
Identity = 86/164 (52.44%), Postives = 104/164 (63.41%), Query Frame = 1
Query:    1 IEFVCTSSRVGTVLVASSAAGERAACAILLGDNATTLREDLERLFPRAELRASKDEIGGLLKQVVSHINN-ACGSELPKLDIRGTPFQKRVWAELSNVPAGTTTTYAAIARAIGAPRAVRAVXXXXXXNRLAVAVPCHRAILSTGGLSGYRWGTDRKRALLLAE 489
            I F      +G +LVA S   ER  CAILLGD+   L  +L+  FPRA+LR  + +   L+ QVV  +   A G  LP LDIRGT FQ+RVW  L  +PAG T +YA +A  IG+PRAVRAV      NRLAVA+PCHR + S GGLSGYRWG +RKR LL  E
Sbjct:  194 IHFALGECALGAILVARS---ERGVCAILLGDDPEALLRELQDSFPRADLRGGEADFERLVAQVVGFVEAPALGLALP-LDIRGTAFQQRVWQALREIPAGRTLSYAEVAACIGSPRAVRAVAQACGANRLAVAIPCHRVVRSDGGLSGYRWGVERKRLLLERE 353          
BLAST of mRNA_P-wetherbeei_contig2005.3.1 vs. uniprot
Match: A0A1T5LAH0_9GAMM (DNA-O6-methylguanine--protein-cysteine S-methyltransferase /Transcriptional regulator Ada n=1 Tax=Pseudoxanthomonas indica TaxID=428993 RepID=A0A1T5LAH0_9GAMM)

HSP 1 Score: 150 bits (379), Expect = 4.530e-40
Identity = 87/165 (52.73%), Postives = 103/165 (62.42%), Query Frame = 1
Query:    1 IEFVCTSSRVGTVLVASSAAGERAACAILLGDNATTLREDLERLFPRAELRASKDEIGGLLKQVVSHINN-ACGSELPKLDIRGTPFQKRVWAELSNVPAGTTTTYAAIARAIGAPRAVRAVXXXXXXNRLAVAVPCHRAILSTGGLSGYRWGTDRKRALLLAEG 492
            I F      +G +LVA SA G    CAILLGD+   L  DL+  FPRA L    D    L+ +VV  +   A G ELP LD+RGT FQ+RVW  L ++PAG T +YA IAR IG PRAVRAV      N LA+A+PCHR + S GGLSGYRWG +RKR LL  EG
Sbjct:  189 IHFALGQCSLGAILVARSARG---VCAILLGDDPDALLRDLQDQFPRARLIGGDDAFEQLVARVVGLVEAPAVGLELP-LDVRGTAFQERVWQALRHIPAGQTASYAQIARQIGMPRAVRAVAQACAANPLAIAIPCHRVVRSDGGLSGYRWGVERKRELLKREG 349          
BLAST of mRNA_P-wetherbeei_contig2005.3.1 vs. uniprot
Match: A0A0S9S688_9HYPH (6-O-methylguanine DNA methyltransferase n=3 Tax=unclassified Methylobacterium TaxID=2615210 RepID=A0A0S9S688_9HYPH)

HSP 1 Score: 150 bits (380), Expect = 5.200e-40
Identity = 87/161 (54.04%), Postives = 101/161 (62.73%), Query Frame = 1
Query:    1 IEFVCTSSRVGTVLVASSAAGERAACAILLGDNATTLREDLERLFPRAELRASKDEIGGLLKQVVSHINN-ACGSELPKLDIRGTPFQKRVWAELSNVPAGTTTTYAAIARAIGAPRAVRAVXXXXXXNRLAVAVPCHRAILSTGGLSGYRWGTDRKRALL 480
            I F      +G +LVA++A G    CAILLGD+   L  DLE  FP+A L A   E  G + QVV  +     G ELP LDI GT FQ+RVW  L  VP GTTTTYA +ARAIG+P+A RAV      NRLAVA+PCHR + S G LSGYRWG  RKR LL
Sbjct:  198 IRFAVGQCSLGAILVAATARG---VCAILLGDDPEALMRDLEDRFPKATLSAGDPEFDGWVAQVVGFVEAPGLGLELP-LDIGGTAFQQRVWQALRAVPVGTTTTYAEVARAIGSPKATRAVALACGSNRLAVAIPCHRVVRSDGSLSGYRWGVGRKRDLL 354          
BLAST of mRNA_P-wetherbeei_contig2005.3.1 vs. uniprot
Match: A0A7Y5L0P5_9DELT (Bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7Y5L0P5_9DELT)

HSP 1 Score: 150 bits (378), Expect = 7.260e-40
Identity = 83/164 (50.61%), Postives = 109/164 (66.46%), Query Frame = 1
Query:    1 IEFVCTSSRVGTVLVASSAAGERAACAILLGDNATTLREDLERLFPRAELRASKDEIGGLLKQVVSHINN-ACGSELPKLDIRGTPFQKRVWAELSNVPAGTTTTYAAIARAIGAPRAVRAVXXXXXXNRLAVAVPCHRAILSTGGLSGYRWGTDRKRALLLAE 489
            I F      +G+VLVA++   ER  C+ILLGD+   L  DLER FPRA+L  + +    L+ QV+  + +   G++LP LDIRGT FQ+RVW  L  +PAGTT +Y+ IA+AIGA ++VRAV      N+LAVA+PCHR +   G LSGYRWG +RKRALL  E
Sbjct:  195 IRFAVAECSLGSVLVAAT---ERGVCSILLGDDPEALMHDLERRFPRAKLVGADEAFEALVAQVIGLVEHPGTGTDLP-LDIRGTAFQQRVWNALRAIPAGTTASYSDIAKAIGAEKSVRAVARACASNQLAVAIPCHRVVRMDGDLSGYRWGVERKRALLARE 354          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2005.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E3W3R7_9HYPH2.980e-4450.61DNA_binding_1 domain-containing protein n=1 Tax=Me... [more]
UPI0018DFAD451.570e-4153.29bifunctional DNA-binding transcriptional regulator... [more]
UPI001C31AB182.430e-4152.44methylated-DNA--[protein]-cysteine S-methyltransfe... [more]
UPI00199E45CE1.460e-4050.00Methylated-DNA--[protein]-cysteine S-methyltransfe... [more]
A0A7X7JLU1_9DELT2.370e-4055.33Bifunctional DNA-binding transcriptional regulator... [more]
A0A839P8M9_9HYPH2.860e-4053.89AraC family transcriptional regulator of adaptativ... [more]
A0A553H0W6_9PSED3.760e-4052.44Bifunctional DNA-binding transcriptional regulator... [more]
A0A1T5LAH0_9GAMM4.530e-4052.73DNA-O6-methylguanine--protein-cysteine S-methyltra... [more]
A0A0S9S688_9HYPH5.200e-4054.046-O-methylguanine DNA methyltransferase n=3 Tax=un... [more]
A0A7Y5L0P5_9DELT7.260e-4050.61Bifunctional DNA-binding transcriptional regulator... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2005contigP-wetherbeei_contig2005:2499..3236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1123269.NX02_25185
PFAMsAda_Zn_binding,DNA_binding_1,HTH_18
Model size738
Max annot lvl204457|Sphingomonadales
KEGG koko:K10778
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.46e-41
EggNOG OGsCOG0350@1|root,COG2169@1|root,COG0350@2|Bacteria,COG2169@2|Bacteria,1N2YQ@1224|Proteobacteria,2TQRX@28211|Alphaproteobacteria,2K165@204457|Sphingomonadales
EC2.1.1.63
DescriptionMetal binding domain of Ada
Cds size558
COG categoryFL
BRITEko00000,ko01000,ko03000,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186189.5267508-UTR-P-wetherbeei_contig2005:2498..26781683186189.5267508-UTR-P-wetherbeei_contig2005:2498..2678Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2005 2499..2678 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186189.538361-CDS-P-wetherbeei_contig2005:2678..32361683186189.538361-CDS-P-wetherbeei_contig2005:2678..3236Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2005 2679..3236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2005.3.1prot_P-wetherbeei_contig2005.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2005 2679..3236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2005.3.1

>prot_P-wetherbeei_contig2005.3.1 ID=prot_P-wetherbeei_contig2005.3.1|Name=mRNA_P-wetherbeei_contig2005.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
IEFVCTSSRVGTVLVASSAAGERAACAILLGDNATTLREDLERLFPRAEL
RASKDEIGGLLKQVVSHINNACGSELPKLDIRGTPFQKRVWAELSNVPAG
TTTTYAAIARAIGAPRAVRAVGRAIGANRLAVAVPCHRAILSTGGLSGYR
WGTDRKRALLLAEGVKVDSLLCSPVGVRKTARSTV*
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mRNA from alignment at P-wetherbeei_contig2005:2499..3236-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2005.3.1 ID=mRNA_P-wetherbeei_contig2005.3.1|Name=mRNA_P-wetherbeei_contig2005.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=738bp|location=Sequence derived from alignment at P-wetherbeei_contig2005:2499..3236- (Phaeothamnion wetherbeei SAG_119_79)
ATAGAGTTCGTCTGCACCTCGTCCCGAGTAGGAACCGTGCTGGTGGCATC TTCAGCCGCTGGTGAGCGTGCCGCTTGCGCCATCCTCCTCGGGGACAACG CCACGACGCTGCGCGAGGACCTGGAGCGACTGTTTCCAAGGGCGGAGCTC AGAGCGTCGAAAGACGAAATCGGAGGCCTGCTGAAACAAGTGGTGAGCCA TATCAACAACGCGTGCGGCTCTGAGCTGCCAAAGCTTGACATTCGTGGCA CCCCTTTCCAGAAGCGCGTCTGGGCTGAGCTTTCCAATGTCCCGGCCGGC ACTACTACCACCTATGCAGCCATTGCCCGCGCAATTGGAGCGCCGAGAGC TGTTCGGGCTGTGGGACGTGCGATTGGGGCGAACCGGCTCGCCGTGGCGG TGCCTTGCCATCGCGCCATTTTATCAACGGGCGGCCTGTCTGGCTACCGC TGGGGTACCGATAGAAAGAGGGCGCTTCTTCTTGCCGAAGGGGTGAAGGT CGATTCGCTCCTCTGCAGCCCGGTGGGAGTTCGCAAAACGGCACGCTCCA CGGTGTAATGCTGAGAAGAGCAAACTGTGGCTCAAGGGAAGATGCGACGG GGTCGTGTCTTATGGGGCACTTATTGAATGCGACCTTGAAAACATGTGCT CTCGAGGGGGAAAGGATGGCCAGCTAAAGACGGGTAAACACTTACATGAC AAGATTGGCAGCTGAGTAAGGGAAGCATCAGTTCCAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2005:2499..3236-

>mRNA_P-wetherbeei_contig2005.3.1 ID=mRNA_P-wetherbeei_contig2005.3.1|Name=mRNA_P-wetherbeei_contig2005.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig2005:2499..3236- (Phaeothamnion wetherbeei SAG_119_79)
ATAGAGTTCGTCTGCACCTCGTCCCGAGTAGGAACCGTGCTGGTGGCATC
TTCAGCCGCTGGTGAGCGTGCCGCTTGCGCCATCCTCCTCGGGGACAACG
CCACGACGCTGCGCGAGGACCTGGAGCGACTGTTTCCAAGGGCGGAGCTC
AGAGCGTCGAAAGACGAAATCGGAGGCCTGCTGAAACAAGTGGTGAGCCA
TATCAACAACGCGTGCGGCTCTGAGCTGCCAAAGCTTGACATTCGTGGCA
CCCCTTTCCAGAAGCGCGTCTGGGCTGAGCTTTCCAATGTCCCGGCCGGC
ACTACTACCACCTATGCAGCCATTGCCCGCGCAATTGGAGCGCCGAGAGC
TGTTCGGGCTGTGGGACGTGCGATTGGGGCGAACCGGCTCGCCGTGGCGG
TGCCTTGCCATCGCGCCATTTTATCAACGGGCGGCCTGTCTGGCTACCGC
TGGGGTACCGATAGAAAGAGGGCGCTTCTTCTTGCCGAAGGGGTGAAGGT
CGATTCGCTCCTCTGCAGCCCGGTGGGAGTTCGCAAAACGGCACGCTCCA
CGGTGTAA
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