mRNA_P-wetherbeei_contig20049.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20049.1.1
Unique NamemRNA_P-wetherbeei_contig20049.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20049.1.1 vs. uniprot
Match: A0A835ZKY2_9STRA (Snare associated Golgi protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKY2_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.670e-27
Identity = 54/96 (56.25%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:  106 IRELWLCAERYRAQHPSFSLAAHASLYVTMQSFCIPGSLVLSILAGGLYPPLQAVALVVCCATTGASLCYLLSACFARVVFKRLLPSTIASFERRV 393
            + ELWLCAE YR Q+P F + A  SLY+ +QSF IPG+++LSIL+G LYP  QA ALV  CAT G+S CYLLS  F RV+ KR  P  +ASF+ ++
Sbjct:    2 VAELWLCAEAYREQNPGFMVTAFVSLYIALQSFAIPGTIILSILSGALYPLAQAQALVALCATIGSSTCYLLSFMFGRVIIKRKFPEAMASFKHKI 97
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BLAST of mRNA_P-wetherbeei_contig20049.1.1 vs. uniprot
Match: A0A397A8A3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A8A3_9STRA)

HSP 1 Score: 108 bits (271), Expect = 5.440e-27
Identity = 60/132 (45.45%), Postives = 85/132 (64.39%), Query Frame = 1 
Query:    1 PILNRPECIATLSAGNFLRITMPAAVGGFPDKLARIRELWLCAERYRAQHPSFSLAAHASLYVTMQSFCIPGSLVLSILAGGLYPPLQAVALVVCCATTGASLCYLLSACFARVVFKRLLPSTIASFERRVS 396
            P+++ P C   +S    ++  +P  VGG  DKL  +  LW CA  Y+ QH +F +++ A +YV++Q+F IPG LVLSIL+G LYP   A  LV  CATTGASLC+LLS    R +  RLLP  +ASF+ +++
Sbjct:   26 PVVDIPACQG-MSLSFMIQGVLPKFVGGRDDKLGTVTALWKCASLYQEQHSNFVVSSFALVYVSLQTFAIPGPLVLSILSGALYPFFYANLLVAVCATTGASLCFLLSHYLGRNLALRLLPDMLASFKAKIA 156
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BLAST of mRNA_P-wetherbeei_contig20049.1.1 vs. uniprot
Match: W4GGZ8_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces TaxID=100860 RepID=W4GGZ8_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.190e-26
Identity = 59/132 (44.70%), Postives = 85/132 (64.39%), Query Frame = 1 
Query:    1 PILNRPECIATLSAGNFLRITMPAAVGGFPDKLARIRELWLCAERYRAQHPSFSLAAHASLYVTMQSFCIPGSLVLSILAGGLYPPLQAVALVVCCATTGASLCYLLSACFARVVFKRLLPSTIASFERRVS 396
            P+++ P C   +S    ++  +P  VGG  DKL  +  LW CA  Y+ QH +F +++ A +YV++Q+F IPG L+LSIL+G LYP   A  LV  CATTGASLC+LLS    R +  RLLP  +ASF+ +++
Sbjct:   26 PVVDIPACQG-MSLSFMIQGVLPKFVGGRDDKLGTVTALWKCASLYQEQHSNFVVSSFALVYVSLQTFAIPGPLILSILSGALYPFFYANLLVAVCATTGASLCFLLSHYLGRNLALRLLPDMLASFKAKIA 156
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BLAST of mRNA_P-wetherbeei_contig20049.1.1 vs. uniprot
Match: F0X1P0_9STRA (SNARE associated Golgi protein putative n=2 Tax=Albugo TaxID=65356 RepID=F0X1P0_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.010e-26
Identity = 54/131 (41.22%), Postives = 85/131 (64.89%), Query Frame = 1 
Query:    1 PILNRPECIATLSAGNFLRITMPAAVGGFPDKLARIRELWLCAERYRAQHPSFSLAAHASLYVTMQSFCIPGSLVLSILAGGLYPPLQAVALVVCCATTGASLCYLLSACFARVVFKRLLPSTIASFERRV 393
            P  N  EC  ++S    ++  +P  + G  DK+  +R LW C  +Y+ +HPSF L +   +Y+T+Q+F IPG ++LSIL+G +YP ++A  +V  CATTGAS C++LS  F + +F+RL PS I  FE+++
Sbjct:   28 PHTNFKEC-ESISLQFMIKGVLPTWLHGRNDKIGTVRSLWSCTNQYKEEHPSFVLLSFCIVYITLQTFAIPGPIILSILSGAMYPFMKAQMVVAFCATTGASCCFMLSYLFGKDLFQRLCPSMIDKFEQKI 157
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BLAST of mRNA_P-wetherbeei_contig20049.1.1 vs. uniprot
Match: A0A8K1CD01_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD01_PYTOL)

HSP 1 Score: 107 bits (268), Expect = 4.690e-26
Identity = 55/110 (50.00%), Postives = 74/110 (67.27%), Query Frame = 1 
Query:   64 MPAAVGGFPDKLARIRELWLCAERYRAQHPSFSLAAHASLYVTMQSFCIPGSLVLSILAGGLYPPLQAVALVVCCATTGASLCYLLSACFARVVFKRLLPSTIASFERRV 393
            +P  + G  DK+  +R LW CA +Y+  HP F LA+   +Y+ +Q+F IPG +VLSIL+G +YP  QA ALV  CATTGASLC++LS    R VF RL  S IASF+ ++
Sbjct:   51 LPTWLNGRNDKMGTVRGLWACANQYKEHHPGFVLASFCIVYIALQTFAIPGPIVLSILSGAIYPFWQAQALVAFCATTGASLCFMLSYFLGRGVFNRLFSSMIASFKGKI 160
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BLAST of mRNA_P-wetherbeei_contig20049.1.1 vs. uniprot
Match: A0A2D4BWT2_PYTIN (SNARE associated Golgi protein, putative n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWT2_PYTIN)

HSP 1 Score: 106 bits (264), Expect = 1.950e-25
Identity = 56/126 (44.44%), Postives = 80/126 (63.49%), Query Frame = 1 
Query:   19 ECIATLSAGNFLRITMPAAVGGFPDKLARIRELWLCAERYRAQHPSFSLAAHASLYVTMQSFCIPGSLVLSILAGGLYPPLQAVALVVCCATTGASLCYLLSACFARVVFKRLLPSTIASFERRVS 396
            EC   +S    +   +P  + G  DK+  ++ LW CA++Y+  HP F LA+   +Y+ +Q+F IPG +VLSIL+G +YP   A ALV  CATTGASLC++LS    R VF RL  S IASF+ +++
Sbjct:   41 EC-ENISISYVISGVLPTWMNGRNDKMGTVKGLWACADQYKQHHPGFVLASFCIVYIVLQTFAIPGPIVLSILSGAMYPFWHAQALVAFCATTGASLCFMLSYFLGRGVFNRLFASMIASFKDKIA 165
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BLAST of mRNA_P-wetherbeei_contig20049.1.1 vs. uniprot
Match: A0A484E1Z5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E1Z5_BRELC)

HSP 1 Score: 105 bits (262), Expect = 3.420e-25
Identity = 55/126 (43.65%), Postives = 80/126 (63.49%), Query Frame = 1 
Query:   19 ECIATLSAGNFLRITMPAAVGGFPDKLARIRELWLCAERYRAQHPSFSLAAHASLYVTMQSFCIPGSLVLSILAGGLYPPLQAVALVVCCATTGASLCYLLSACFARVVFKRLLPSTIASFERRVS 396
            EC  ++S    +R  +P  + G  +KL  ++ LW CA +YR  H +F LA+   +Y+ +Q+F IPG +VLSIL+G +YP +QA  LV CCATTGASLC++LS    R VF  LL   I  F+ +++
Sbjct:   35 EC-ESISVSYVIRGVLPTWLNGRDNKLETVQGLWHCATQYREHHSAFVLASFCIVYIALQTFAIPGPIVLSILSGAMYPMVQAQILVACCATTGASLCFMLSYFLGRGVFSNLLAGMIRRFKEKIA 159
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BLAST of mRNA_P-wetherbeei_contig20049.1.1 vs. uniprot
Match: A0A6G0WGQ6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGQ6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 8.250e-25
Identity = 60/132 (45.45%), Postives = 79/132 (59.85%), Query Frame = 1 
Query:    1 PILNRPECIATLSAGNFLRITMPAAVGGFPDKLARIRELWLCAERYRAQHPSFSLAAHASLYVTMQSFCIPGSLVLSILAGGLYPPLQAVALVVCCATTGASLCYLLSACFARVVFKRLLPSTIASFERRVS 396
            P +   EC   +S    ++  +P  +GG  DKL  +  LW CA  Y+ QH SF L+    +YV++Q+F IPG LVLSIL+G LYP   A  LV  CATTGASLCYLLS      +  RLLP  +A+F  ++S
Sbjct:   26 PEVEIAECHG-MSLSFMIQGVLPKFLGGRDDKLGTVTALWKCASLYQEQHSSFVLSCFVLVYVSLQTFAIPGPLVLSILSGALYPFWLANLLVAACATTGASLCYLLSYFLGHSLANRLLPDMLANFRAKIS 156
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BLAST of mRNA_P-wetherbeei_contig20049.1.1 vs. uniprot
Match: A0A024GBJ3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GBJ3_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.350e-24
Identity = 56/131 (42.75%), Postives = 84/131 (64.12%), Query Frame = 1 
Query:    1 PILNRPECIATLSAGNFLRITMPAAVGGFPDKLARIRELWLCAERYRAQHPSFSLAAHASLYVTMQSFCIPGSLVLSILAGGLYPPLQAVALVVCCATTGASLCYLLSACFARVVFKRLLPSTIASFERRV 393
            P  N  EC  ++S    ++  +P  + G  DK+  +R LW C  +Y+ +HP F L +   +Y+T+Q+F IPG +VLSIL+G +YP L+A  LV  CATTGAS C++LS  F + +F+RL PS I  FE+++
Sbjct:  782 PETNFKEC-ESISLQFMIKGVLPTWLHGRNDKIGTVRSLWSCTNQYKEEHPVFVLLSFCIVYITLQTFAIPGPIVLSILSGAMYPFLKAQILVAFCATTGASCCFILSYLFGKDLFQRLCPSMIDRFEQKI 911
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BLAST of mRNA_P-wetherbeei_contig20049.1.1 vs. uniprot
Match: A0A485LMH8_9STRA (Aste57867_23381 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LMH8_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.570e-24
Identity = 56/132 (42.42%), Postives = 82/132 (62.12%), Query Frame = 1 
Query:    1 PILNRPECIATLSAGNFLRITMPAAVGGFPDKLARIRELWLCAERYRAQHPSFSLAAHASLYVTMQSFCIPGSLVLSILAGGLYPPLQAVALVVCCATTGASLCYLLSACFARVVFKRLLPSTIASFERRVS 396
            P+++   C   +S    ++  +P  +GG  DK+  +  LW CA  Y+ QH +F L     +YV++Q+F IPG L+LSIL+G LYP +QA  LV  CAT GASLC+LLS    R +  RLLP  +A+F+ ++S
Sbjct:   26 PVVDSALC-DDMSLSFMIQGVLPKILGGRDDKMGTVTSLWKCATVYQEQHGTFVLTCFVLIYVSLQTFAIPGPLILSILSGALYPFVQANLLVAGCATAGASLCFLLSYTLGRSLANRLLPEMLANFKLKIS 156
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20049.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZKY2_9STRA1.670e-2756.25Snare associated Golgi protein-domain-containing p... [more]
A0A397A8A3_9STRA5.440e-2745.45Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
W4GGZ8_9STRA2.190e-2644.70Uncharacterized protein n=8 Tax=Aphanomyces TaxID=... [more]
F0X1P0_9STRA3.010e-2641.22SNARE associated Golgi protein putative n=2 Tax=Al... [more]
A0A8K1CD01_PYTOL4.690e-2650.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BWT2_PYTIN1.950e-2544.44SNARE associated Golgi protein, putative n=2 Tax=P... [more]
A0A484E1Z5_BRELC3.420e-2543.65Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A6G0WGQ6_9STRA8.250e-2545.45Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024GBJ3_9STRA1.350e-2442.75Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A485LMH8_9STRA1.570e-2442.42Aste57867_23381 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20049contigP-wetherbeei_contig20049:335..730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008872663.1
Preferred nameTMEM41B
PFAMsSNARE_assoc
Model size396
Max annot lvl2759|Eukaryota
KEGG koko:K16302
KEGG TC9.A.40.3
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006928,GO:0006935,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0008045,GO:0008150,GO:0009605,GO:0009653,GO:0009987,GO:0010646,GO:0010647,GO:0012505,GO:0016043,GO:0022008,GO:0023051,GO:0023056,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0032222,GO:0032224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0040011,GO:0042221,GO:0042330,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0050804,GO:0050806,GO:0050896,GO:0061564,GO:0065007,GO:0071840,GO:0097485,GO:0099177,GO:0120036,GO:0120039
Exons1
Evalue9.33e-28
EggNOG OGsCOG0398@1|root,KOG3140@2759|Eukaryota
Descriptioncanonical Wnt signaling pathway involved in osteoblast differentiation
Cds size396
COG categoryO
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186189.4000616-CDS-P-wetherbeei_contig20049:334..7301683186189.4000616-CDS-P-wetherbeei_contig20049:334..730Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20049 335..730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20049.1.1prot_P-wetherbeei_contig20049.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20049 335..730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20049.1.1

>prot_P-wetherbeei_contig20049.1.1 ID=prot_P-wetherbeei_contig20049.1.1|Name=mRNA_P-wetherbeei_contig20049.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
PILNRPECIATLSAGNFLRITMPAAVGGFPDKLARIRELWLCAERYRAQH
PSFSLAAHASLYVTMQSFCIPGSLVLSILAGGLYPPLQAVALVVCCATTG
ASLCYLLSACFARVVFKRLLPSTIASFERRVS
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mRNA from alignment at P-wetherbeei_contig20049:335..730-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20049.1.1 ID=mRNA_P-wetherbeei_contig20049.1.1|Name=mRNA_P-wetherbeei_contig20049.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig20049:335..730- (Phaeothamnion wetherbeei SAG_119_79)
CCGATACTCAACAGGCCCGAGTGCATTGCAACCCTCAGCGCTGGCAACTT
CCTCCGCATCACAATGCCCGCCGCGGTTGGCGGCTTCCCAGACAAGCTCG
CGCGAATCCGCGAGCTGTGGCTCTGCGCCGAGCGGTACCGCGCGCAGCAC
CCGTCCTTCTCGCTGGCGGCGCATGCCAGCCTCTACGTGACCATGCAGTC
CTTCTGCATCCCCGGCTCGCTCGTGCTGAGCATCCTGGCCGGAGGGCTGT
ACCCCCCCTTGCAGGCGGTGGCACTCGTGGTGTGCTGCGCGACGACGGGG
GCGTCGCTCTGCTACCTGCTCAGTGCGTGCTTCGCGCGGGTGGTCTTCAA
GCGGCTCTTGCCGTCGACCATCGCGAGCTTCGAGAGAAGGGTGAGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20049:335..730-

>mRNA_P-wetherbeei_contig20049.1.1 ID=mRNA_P-wetherbeei_contig20049.1.1|Name=mRNA_P-wetherbeei_contig20049.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig20049:335..730- (Phaeothamnion wetherbeei SAG_119_79)
CCGATACTCAACAGGCCCGAGTGCATTGCAACCCTCAGCGCTGGCAACTT
CCTCCGCATCACAATGCCCGCCGCGGTTGGCGGCTTCCCAGACAAGCTCG
CGCGAATCCGCGAGCTGTGGCTCTGCGCCGAGCGGTACCGCGCGCAGCAC
CCGTCCTTCTCGCTGGCGGCGCATGCCAGCCTCTACGTGACCATGCAGTC
CTTCTGCATCCCCGGCTCGCTCGTGCTGAGCATCCTGGCCGGAGGGCTGT
ACCCCCCCTTGCAGGCGGTGGCACTCGTGGTGTGCTGCGCGACGACGGGG
GCGTCGCTCTGCTACCTGCTCAGTGCGTGCTTCGCGCGGGTGGTCTTCAA
GCGGCTCTTGCCGTCGACCATCGCGAGCTTCGAGAGAAGGGTGAGT
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