mRNA_P-wetherbeei_contig20045.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20045.2.1
Unique NamemRNA_P-wetherbeei_contig20045.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20045.2.1 vs. uniprot
Match: UPI001C3C3397 (2-phospho-L-lactate guanylyltransferase n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3C3397)

HSP 1 Score: 218 bits (554), Expect = 3.570e-69
Identity = 116/163 (71.17%), Postives = 134/163 (82.21%), Query Frame = 1
Query:    1 LQVAMLSDVLGACAGSTTLAGVLVVTSDPDAAALARRLAGARIVPDHDPPRGMNAAVTRGLIAVAAAGAEGALVLTADLPLAHPDDIDALLEACPPPPACVLAPSLAGTGTNAMLIAPPTALSPRLGPDSLARHSAQALRRGLGIRHLAIPRLALDIDTPRDL 489
            LQVAML+DVLGACAG+  LAGV++VTSDPDAAAL   +AGAR+VPDHDPPRGMNAAV RGL+AVAA  A+ ALVLTADLPLA P+DI A++ A P  P+ +L PS  GTGTNAML+ PP AL+PRLGPDS ARH+ QA RRGL +  L +PRLALDIDTP DL
Sbjct:   33 LQVAMLTDVLGACAGTGDLAGVMIVTSDPDAAALGAAIAGARVVPDHDPPRGMNAAVARGLVAVAAERADAALVLTADLPLARPEDIAAIIAAGPAAPSALLVPSADGTGTNAMLLRPPAALAPRLGPDSYARHTVQAARRGLPVTRLELPRLALDIDTPADL 195          
BLAST of mRNA_P-wetherbeei_contig20045.2.1 vs. uniprot
Match: A0A6N6T1D5_9HYPH (3-phospho-D-glycerate guanylyltransferase n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6T1D5_9HYPH)

HSP 1 Score: 116 bits (291), Expect = 2.000e-29
Identity = 79/161 (49.07%), Postives = 98/161 (60.87%), Query Frame = 1
Query:   13 MLSDVLGACAGSTTLAGVLVVTSDPDAAALARRLAGARIVPDHDPPRGMNAAVTRGLIAVAAAGAEGALVLTADLPLAHPDDIDALLEACPPP--PACVLAPSLAGTGTNAMLIAPPTALSPRLGPDSLARHSAQALRRGLGIRHLAIPRLALDIDTPRDL 489
            ML DVL     +  +A  +VVT D +AA LA R AGA ++ + D PR +NAAV  GL    A G   ALVL AD+PLA P ++ A++EA P    P   L PS  G GTNA+L++PP A+ P  G  S  RH AQA+ R L  R L +P LA DIDTPRDL
Sbjct:   38 MLEDVLATIGKTEAIARTIVVTPDAEAAELAAR-AGAMLLRE-DYPRNLNAAVALGLARAEAHGVAQALVLPADVPLAEPGELRAVIEALPATSGPRAALVPSHDGDGTNALLVSPPGAIEPAFGEGSFVRHLAQAVGRRLDTRVLHLPGLAADIDTPRDL 196          
BLAST of mRNA_P-wetherbeei_contig20045.2.1 vs. uniprot
Match: A0A7C2LS47_9HYPH (3-phospho-D-glycerate guanylyltransferase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2LS47_9HYPH)

HSP 1 Score: 105 bits (262), Expect = 4.410e-25
Identity = 72/163 (44.17%), Postives = 96/163 (58.90%), Query Frame = 1
Query:    1 LQVAMLSDVLGACAGSTTLAGVLVVTSDPDAAALARRLAGARIVPDHDPPRGMNAAVTRGLIAVAAAGAEGALVLTADLPLAHPDDIDALLEACPPPPACVLAPSLAGTGTNAMLIAPPTALSPRLGPDSLARHSAQALRRGLGIRHLAIPRLALDIDTPRDL 489
            L +AML DVL A A   ++ GVLVVT DP AAALA   AG  +VP+     G+NAA+  G+    + GA   LVL  D+PLA P +I+ +L +    P   L PS  G GT+A+L+APP A++P  GP S   H +QA+ R + +  +    LA DID P DL
Sbjct:   34 LVLAMLEDVLAALARVGSVEGVLVVTPDPAAAALAGA-AGGLVVPETG-AGGLNAAIETGIACARSRGARRVLVLPGDVPLATPAEIEGVLASRGTQPGVTLVPSHDGNGTSALLLAPPDAVAPAFGPGSYVAHLSQAMARRIDVNVVHSAGLARDIDEPADL 194          
BLAST of mRNA_P-wetherbeei_contig20045.2.1 vs. uniprot
Match: A0A7D7VB15_9BACT (2-phospho-L-lactate guanylyltransferase n=1 Tax=Candidatus Dadabacteria bacterium TaxID=2080303 RepID=A0A7D7VB15_9BACT)

HSP 1 Score: 97.1 bits (240), Expect = 6.090e-22
Identity = 64/159 (40.25%), Postives = 89/159 (55.97%), Query Frame = 1
Query:   13 MLSDVLGACAGSTTLAGVLVVTSDPDAAALARRLAGARIVPDHDPPRGMNAAVTRGLIAVAAAGAEGALVLTADLPLAHPDDIDALLEACPPPPACVLAPSLAGTGTNAMLIAPPTALSPRLGPDSLARHSAQALRRGLGIRHLAIPRLALDIDTPRDL 489
            ML DVL   A      GV +VT++PDA ++ R   G  I+ +HD  +  +++V   +    AAG + ALV+  D+P A   + DA+LE        ++ PS  GTGTNA+ ++PP ALSP  G +S  RH   A RRGL    L +  + LDIDTP DL
Sbjct:   34 MLEDVLSNVARCERTDGVFLVTAEPDAMSMGREF-GMEIILEHD-QQSESSSVDFAMKKCFAAGVDSALVIPGDIPAAQAWEFDAVLEKDDGEKRIIIVPSRDGTGTNALFMSPPGALSPHFGENSFPRHKETARRRGLEFSSLTLGGIGLDIDTPEDL 190          
BLAST of mRNA_P-wetherbeei_contig20045.2.1 vs. uniprot
Match: A0A2W5QW67_STANO (3-phospho-D-glycerate guanylyltransferase n=1 Tax=Starkeya novella TaxID=921 RepID=A0A2W5QW67_STANO)

HSP 1 Score: 97.1 bits (240), Expect = 7.090e-22
Identity = 71/162 (43.83%), Postives = 92/162 (56.79%), Query Frame = 1
Query:   13 MLSDVLGACAGSTTLAGVLVVTSDPDAAALARRLAGARIVPDHDPPRGMNAAVTRGLIAVAAAGAEGALVLTADLPLAHPDDIDALLEACPPPPACVLAPSLAGTGTNAMLIAPPTALSPRLGPDSLARHSAQALRRGL---GIRHLAIPRLALDIDTPRDL 489
            ML DVL A   S  LAG++VVT+DP+A  LAR + GAR++ + +   G+N AV      +   G  G LVL +D+P   P++I  LL A     A  L  +  G GTNA+L  PP AL    GP S + H A A+ RG+   G    A PRLALDIDTP D+
Sbjct:   37 MLRDVLEALRASEGLAGIVVVTADPEAGLLAREV-GARLMVEKE-ACGLNQAVAEAATRLTGEGRGGMLVLPSDIPAVTPEEIGRLLAAHGRDRAVSLVCAHDGQGTNALLATPPDALDFGYGPSSFSTHFAMAMARGIVPRGHDAAAFPRLALDIDTPADV 196          
BLAST of mRNA_P-wetherbeei_contig20045.2.1 vs. uniprot
Match: A0A7V9H7E8_9ACTN (Phosphoenolpyruvate guanylyltransferase n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7V9H7E8_9ACTN)

HSP 1 Score: 95.9 bits (237), Expect = 1.850e-21
Identity = 71/165 (43.03%), Postives = 96/165 (58.18%), Query Frame = 1
Query:    1 LQVAMLSDVLGACAGSTTLAGVLVVTSDPDAAALARRLAGARIVPDHDPPR--GMNAAVTRGLIAVAAAGAEGALVLTADLPLAHPDDIDALLEACPPPPACVLAPSLAGTGTNAMLIAPPTALSPRLGPDSLARHSAQALRRGLGIRHLAIPRLALDIDTPRDL 489
            L  AM+ DVL A A    L GV+VVT++  A ALA   AGA +VPD   PR  G + A   G+ A  A GA+  L++  D P   P +I++LL +       V+ P   G+GTNA+L++PP A++P  GP S ARH+A A   G  +R   +P L LD+DTP DL
Sbjct:   31 LAEAMVEDVLAALAAVDGLHGVVVVTAEIRAHALALE-AGASVVPD---PREAGQSFAAGVGIEAAVADGADRVLLVPGDCPALDPGEIESLLGSRRAAEV-VIVPDRHGSGTNALLLSPPDAVTPTFGPGSFARHAATARAAGATVRVAQVPSLGLDVDTPGDL 190          
BLAST of mRNA_P-wetherbeei_contig20045.2.1 vs. uniprot
Match: A0A2W5MEX5_STANO (3-phospho-D-glycerate guanylyltransferase n=1 Tax=Starkeya novella TaxID=921 RepID=A0A2W5MEX5_STANO)

HSP 1 Score: 94.0 bits (232), Expect = 1.300e-20
Identity = 72/166 (43.37%), Postives = 95/166 (57.23%), Query Frame = 1
Query:    1 LQVAMLSDVLGACAGSTTLAGVLVVTSDPDAAALARRLAGARIVPDHDPPRGMNAAVTRGLIAVAAAGAEGALVLTADLPL---AHPDDIDALLEACPPPPACVLAPSLAGTGTNAMLIAPPTALSPRLGPDSLARHSAQALRRGLGIRHLAIPRLALDIDTPRDL 489
            L  AML +VL A +GS+ L G LVVTSDP AAA+ARR+  A I    +   G+NAAV +GL  +A   A  A+V+ AD+PL   A  D++ A L+        VLAP+    GTN + ++P  A++P  G DSL RH   A   G   R + +    LDIDTP DL
Sbjct:   36 LAEAMLEEVLAALSGSSALDGALVVTSDPAAAAIARRVGAAAIGDAAE--SGVNAAVDQGLRCLARWEASRAIVVPADVPLLVGAEIDEVAAALDRA----EVVLAPAERDGGTNVLALSPIDAIAPAFGADSLNRHVEAARAAGREARVVRLSGAGLDIDTPEDL 195          
BLAST of mRNA_P-wetherbeei_contig20045.2.1 vs. uniprot
Match: A0A259KW41_9HYPH (3-phospho-D-glycerate guanylyltransferase n=4 Tax=unclassified Hyphomicrobiales TaxID=41292 RepID=A0A259KW41_9HYPH)

HSP 1 Score: 93.6 bits (231), Expect = 1.900e-20
Identity = 71/165 (43.03%), Postives = 93/165 (56.36%), Query Frame = 1
Query:    1 LQVAMLSDVLGACAGSTTLAGVLVVTSDPDAAALARRLAGARIVPDHDPPRGMNAAVTRGLIAVAAAGAEGALVLTADLPLAHPDDIDALLEACPPPPACVLAPSLAGTGTNAMLIAPPTALSPRLGPDSLARH--SAQALRRGLGIRHLAIPRLALDIDTPRDL 489
            L  AML  VLG  AG   LAG+L+VTSDP+A ALAR   GA ++PD     G NAAV  G+ A+  AG  G +V+  D+P     ++DA+++A    P  VL P+    GTN +   PP  ++P  GP S ARH  SA+A  R   + HL  P +  DID   DL
Sbjct:   44 LAKAMLRHVLGVLAGCRGLAGILIVTSDPEAMALARAF-GAHVLPDAM-ESGTNAAVRAGMAALDRAGKGGVIVVPGDVPGITRAEMDAVVDALASAPV-VLVPATRDGGTNLLAACPPALMAPSFGPSSFARHLESARAAGREPCVLHL--PGIGRDIDVSADL 203          
BLAST of mRNA_P-wetherbeei_contig20045.2.1 vs. uniprot
Match: A0A538EFE4_9ACTN (Phosphoenolpyruvate guanylyltransferase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538EFE4_9ACTN)

HSP 1 Score: 92.4 bits (228), Expect = 6.040e-20
Identity = 72/165 (43.64%), Postives = 90/165 (54.55%), Query Frame = 1
Query:    1 LQVAMLSDVLGACAGSTTLAGVLVVTSDPDAAALARRLAGARIVPDHDPPRGMNAAVTRGLIAVAAAGAEGALVLTADLPLAHPDDIDALLEACPPPPACVLAPSLAGTGTNAMLIAPPTALSPRLGPDSLARHSAQALRRGLGIRHLAIP--RLALDIDTPRDL 489
            L  AML DVL A A  T L   +VVT +P AAALA    GA +V D D   G +AA   GL    + GA  AL++  D P   P+++ ALL      PA  + P   GTGTNA+L+APP A+ P  GP S ARH  ++L R  G+     P   LA D+DT  DL
Sbjct:   31 LAEAMLRDVLLALARVTGLERTIVVTGEPRAAALAGFF-GAEVVAD-DRDAGQSAAAGLGLARARSLGAGRALLVPGDCPALDPEEVTALLARHMAAPAVAIVPDRHGTGTNALLLAPPDAIEPAFGPGSRARH--ESLARAAGVEPAVEPLESLAYDVDTGADL 191          
BLAST of mRNA_P-wetherbeei_contig20045.2.1 vs. uniprot
Match: UPI000427E163 (2-phospho-L-lactate guanylyltransferase n=1 Tax=Solirubrobacter sp. URHD0082 TaxID=1298857 RepID=UPI000427E163)

HSP 1 Score: 91.7 bits (226), Expect = 6.470e-20
Identity = 71/164 (43.29%), Postives = 92/164 (56.10%), Query Frame = 1
Query:    1 LQVAMLSDVLGACAGSTTLAGVLVVTSDPDAAALARRLAGARIVPDHDPPR-GMNAAVTRGLIAVAAAGAEGALVLTADLPLAHPDDIDALLEACPPPPACVLAPSLAGTGTNAMLIAPPTALSPRLGPDSLARHSAQALRRGLGIRHLAIPRLALDIDTPRDL 489
            L  AM+ DVL A      L  V+VVT++P AAA A   AGA +V  HDP   G +AA +RG+ A    GA  AL++  D P  +P ++  LL       A V+ P   GTGTNA+L+ PP+A++P  G  S ARHSA A  R        +P L LD+DTP DL
Sbjct:   29 LAEAMVGDVLAALGQVPGLDDVIVVTAEP-AAARAADAAGAHVV--HDPEEAGQSAAASRGIDAAVERGAGRALLVPGDCPALNPAEVMQLLARTA---AVVIVPDRHGTGTNALLLTPPSAIAPAFGTGSFARHSALAGGRA---EVCEVPSLRLDVDTPDDL 183          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20045.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3C33973.570e-6971.172-phospho-L-lactate guanylyltransferase n=1 Tax=Mi... [more]
A0A6N6T1D5_9HYPH2.000e-2949.073-phospho-D-glycerate guanylyltransferase n=1 Tax=... [more]
A0A7C2LS47_9HYPH4.410e-2544.173-phospho-D-glycerate guanylyltransferase n=1 Tax=... [more]
A0A7D7VB15_9BACT6.090e-2240.252-phospho-L-lactate guanylyltransferase n=1 Tax=Ca... [more]
A0A2W5QW67_STANO7.090e-2243.833-phospho-D-glycerate guanylyltransferase n=1 Tax=... [more]
A0A7V9H7E8_9ACTN1.850e-2143.03Phosphoenolpyruvate guanylyltransferase n=1 Tax=So... [more]
A0A2W5MEX5_STANO1.300e-2043.373-phospho-D-glycerate guanylyltransferase n=1 Tax=... [more]
A0A259KW41_9HYPH1.900e-2043.033-phospho-D-glycerate guanylyltransferase n=4 Tax=... [more]
A0A538EFE4_9ACTN6.040e-2043.64Phosphoenolpyruvate guanylyltransferase n=1 Tax=Ac... [more]
UPI000427E1636.470e-2043.292-phospho-L-lactate guanylyltransferase n=1 Tax=So... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20045contigP-wetherbeei_contig20045:753..1241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1121106.JQKB01000008_gene1358
Preferred namecofC
PFAMsCofC
Model size489
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00002
KEGG koko:K14941
KEGG ReactionR09397
KEGG Pathwayko00680,ko01120,map00680,map01120
KEGG ModuleM00378
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.08e-19
EggNOG OGsCOG1920@1|root,COG1920@2|Bacteria,1RJPN@1224|Proteobacteria,2UAA7@28211|Alphaproteobacteria
EC2.7.7.68
DescriptionGuanylyltransferase that catalyzes the activation of 2- phospho-L-lactate (LP) as (2S)-lactyl-2-diphospho-5'-guanosine (LPPG), via the condensation of LP with GTP. Is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor
Cds size477
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186189.3341444-CDS-P-wetherbeei_contig20045:752..12291683186189.3341444-CDS-P-wetherbeei_contig20045:752..1229Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20045 753..1229 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186189.3592439-UTR-P-wetherbeei_contig20045:1229..12411683186189.3592439-UTR-P-wetherbeei_contig20045:1229..1241Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20045 1230..1241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20045.2.1prot_P-wetherbeei_contig20045.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20045 753..1229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20045.2.1

>prot_P-wetherbeei_contig20045.2.1 ID=prot_P-wetherbeei_contig20045.2.1|Name=mRNA_P-wetherbeei_contig20045.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
MLSDVLGACAGSTTLAGVLVVTSDPDAAALARRLAGARIVPDHDPPRGMN
AAVTRGLIAVAAAGAEGALVLTADLPLAHPDDIDALLEACPPPPACVLAP
SLAGTGTNAMLIAPPTALSPRLGPDSLARHSAQALRRGLGIRHLAIPRLA
LDIDTPRDL
back to top

mRNA from alignment at P-wetherbeei_contig20045:753..1241-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20045.2.1 ID=mRNA_P-wetherbeei_contig20045.2.1|Name=mRNA_P-wetherbeei_contig20045.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig20045:753..1241- (Phaeothamnion wetherbeei SAG_119_79)
CTGCAGGTGGCGATGCTGAGCGACGTCCTCGGCGCCTGCGCCGGTTCGAC GACGCTGGCGGGGGTGCTGGTGGTGACCTCGGATCCGGATGCCGCCGCCC TCGCGCGCCGGCTGGCGGGTGCGCGGATCGTTCCCGACCACGACCCTCCG CGCGGCATGAACGCGGCCGTCACCCGCGGCCTGATCGCGGTGGCCGCCGC CGGGGCCGAGGGCGCGCTGGTGCTGACCGCCGACCTGCCGCTGGCCCACC CGGACGACATCGACGCGCTCCTGGAGGCCTGCCCGCCACCCCCCGCGTGC GTGCTCGCCCCCTCCCTGGCGGGGACCGGGACCAACGCCATGCTCATCGC CCCGCCGACGGCGCTCTCGCCCCGCCTCGGCCCCGATTCACTCGCCCGCC ACAGCGCCCAGGCGCTGCGACGGGGGCTCGGGATCCGACACCTTGCGATC CCGCGTCTGGCGCTGGACATCGACACGCCGCGCGACCTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig20045:753..1241-

>mRNA_P-wetherbeei_contig20045.2.1 ID=mRNA_P-wetherbeei_contig20045.2.1|Name=mRNA_P-wetherbeei_contig20045.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig20045:753..1241- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGAGCGACGTCCTCGGCGCCTGCGCCGGTTCGACGACGCTGGCGGG
GGTGCTGGTGGTGACCTCGGATCCGGATGCCGCCGCCCTCGCGCGCCGGC
TGGCGGGTGCGCGGATCGTTCCCGACCACGACCCTCCGCGCGGCATGAAC
GCGGCCGTCACCCGCGGCCTGATCGCGGTGGCCGCCGCCGGGGCCGAGGG
CGCGCTGGTGCTGACCGCCGACCTGCCGCTGGCCCACCCGGACGACATCG
ACGCGCTCCTGGAGGCCTGCCCGCCACCCCCCGCGTGCGTGCTCGCCCCC
TCCCTGGCGGGGACCGGGACCAACGCCATGCTCATCGCCCCGCCGACGGC
GCTCTCGCCCCGCCTCGGCCCCGATTCACTCGCCCGCCACAGCGCCCAGG
CGCTGCGACGGGGGCTCGGGATCCGACACCTTGCGATCCCGCGTCTGGCG
CTGGACATCGACACGCCGCGCGACCTG
back to top