mRNA_P-wetherbeei_contig2004.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2004.2.1
Unique NamemRNA_P-wetherbeei_contig2004.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2004.2.1 vs. uniprot
Match: D7G904_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G904_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.930e-14
Identity = 63/156 (40.38%), Postives = 77/156 (49.36%), Query Frame = 3 
Query:  438 GGLRRASSRPISIIRSTSVPGQLHEATG---------------------TTQYGKFQDFNDDLSVVTSAAAAAAVAMGFSGARAVATPVLVAQSLPMPAAPLMGSSLPPSRFMDDMPLLHLGPQADAAEVPTICGSLSASLNTVGVMYASSCPATL 842
            G +RR +SRPISIIRSTSVP QL + T                      T       DFN               A G +G         + QSLP P APL+  SLPPSRF+DD+P L LGPQAD +   + CG+LS SL     +YA+SCPA +
Sbjct:   23 GVVRRTASRPISIIRSTSVPAQLQDRTQAGDPDPEGGSGGNPANRRGLHTRDRSLQHDFNSG------------AAGGVNG---------IVQSLPPPQAPLLAGSLPPSRFLDDLPPLSLGPQADNS-FDSDCGALSTSLKA-NRLYATSCPANI 155
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2004.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G904_ECTSI1.930e-1440.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2004contigP-wetherbeei_contig2004:1416..3914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2264
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_002420.1
Cds size1062
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186189.0796838-UTR-P-wetherbeei_contig2004:1415..17261683186189.0796838-UTR-P-wetherbeei_contig2004:1415..1726Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2004 1416..1726 +
1683186189.102414-UTR-P-wetherbeei_contig2004:3023..39141683186189.102414-UTR-P-wetherbeei_contig2004:3023..3914Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2004 3024..3914 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186189.087646-CDS-P-wetherbeei_contig2004:1726..22301683186189.087646-CDS-P-wetherbeei_contig2004:1726..2230Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2004 1727..2230 +
1683186189.095011-CDS-P-wetherbeei_contig2004:2465..30231683186189.095011-CDS-P-wetherbeei_contig2004:2465..3023Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2004 2466..3023 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2004.2.1prot_P-wetherbeei_contig2004.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2004 1727..3023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2004.2.1

>prot_P-wetherbeei_contig2004.2.1 ID=prot_P-wetherbeei_contig2004.2.1|Name=mRNA_P-wetherbeei_contig2004.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=354bp
MANARWGNPRVSRSPLAPGPASDQKQQQQQRTSQSPPVAIVAGGLRRASS
RPISIIRSTSVPGQLHEATGTTQYGKFQDFNDDLSVVTSAAAAAAVAMGF
SGARAVATPVLVAQSLPMPAAPLMGSSLPPSRFMDDMPLLHLGPQADAAE
VPTICGSLSASLNTVGVMYASSCPATLWGFQRAAAIHHHGGGAGAGKPPS
LAEEDEDEERPESFSPGSNRGAGSLTGLSVLEAIASSSSGPAMFLPPRDG
RDFSEDSSAGDMGRMIGGYGGGEGGGRHTIGDRDAAGVGVNAGPDGEDGD
GIDALNPPGGVFMLEELDVGGSMEGEADDAATAAADDEDEDDDDRGEEDG
GGD*
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mRNA from alignment at P-wetherbeei_contig2004:1416..3914+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2004.2.1 ID=mRNA_P-wetherbeei_contig2004.2.1|Name=mRNA_P-wetherbeei_contig2004.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2499bp|location=Sequence derived from alignment at P-wetherbeei_contig2004:1416..3914+ (Phaeothamnion wetherbeei SAG_119_79)
GGAAGGGGAGGGAAAGCCGCAACCAAATCAGATCACGTAGAGAGGTGAGA
GCAGCAGAAGTCGTACTTCGGGGCTGCGGAAAGGGCTTCGTTCCGTTTTT
TAACACACACAGATTTCCTTGCTCTTCATTTCCGACGCCTCCCCATTCCC
GAGGCGATGACGAATGTGCGCCCCTCGTTGTCGCGTCCAAACATCAACCT
TTATTTCATTTCCTGCGCGTCTTTATCTGAATCTCCTCCTTCTTCGTTTG
CCGCCCCCTCAAGATGCCACTAGCCAACTTCTAAATATCATCTCAAGATC
ATCTCCTTGCCATGGCGAATGCCCGCTGGGGAAATCCTCGAGTGAGTCGT
TCTCCGCTGGCGCCGGGGCCGGCGAGCGATCAAAAACAACAACAGCAACA
GCGCACAAGCCAAAGCCCGCCGGTGGCAATCGTGGCTGGCGGACTGCGCC
GGGCATCGAGCCGCCCAATATCCATCATCCGCAGCACGTCGGTGCCGGGG
CAACTCCACGAGGCGACCGGAACAACCCAGTACGGGAAATTCCAGGACTT
CAACGACGATCTCTCCGTTGTGACCTCGGCTGCGGCGGCGGCTGCCGTCG
CGATGGGCTTCTCCGGTGCGCGCGCTGTGGCCACGCCCGTGCTCGTGGCG
CAGTCGCTGCCGATGCCGGCCGCGCCGCTGATGGGCAGCTCGCTGCCGCC
GTCGCGCTTCATGGACGACATGCCGCTGCTCCATCTTGGCCCGCAGGCCG
ATGCGGCCGAAGTTCCGACCATCTGCGGTTCCCTCTCGGCCTCCCTTAAT
ACCGTCGGGGTCATGGTGCGCCTCAGCTTATCAGAATCGTGCTCCTTCCT
CTTTTCCCCGCTGCGCCTCTCCGTTTTTCTCTCATTTCCGTCCCCTGTCT
GGGGTCCGGTGGGAGATTGTTTCCCCTCATCGCATTTCCATATAATCGGA
TCCCATACGGCCTCGCGCAACCGGTCAAATTGCTCCCCACTTTATCCTCA
CTCATCGCTTCTATTTCCGTCGTGGCCGCCCGTTTCTTTCTTGCCTGCAG
TACGCATCGTCCTGCCCGGCGACCCTCTGGGGCTTCCAGCGTGCCGCCGC
CATCCACCACCACGGCGGCGGCGCCGGCGCCGGCAAGCCGCCGTCCCTGG
CGGAGGAGGACGAAGACGAGGAGCGCCCCGAAAGCTTCTCTCCCGGCAGC
AACCGCGGCGCCGGCAGCCTGACGGGACTATCGGTCCTCGAGGCGATTGC
GTCGTCGTCGTCGGGCCCCGCCATGTTCCTGCCGCCGCGTGACGGGCGGG
ACTTCAGCGAGGACTCCTCGGCCGGCGACATGGGCCGCATGATCGGTGGC
TACGGTGGCGGCGAGGGCGGCGGCAGGCACACCATCGGAGACAGGGACGC
CGCCGGCGTGGGCGTTAATGCTGGCCCCGACGGAGAGGACGGCGACGGCA
TCGACGCTCTGAATCCGCCGGGCGGCGTGTTCATGCTGGAGGAGCTGGAC
GTCGGCGGGAGCATGGAGGGGGAGGCGGATGATGCCGCTACCGCCGCGGC
CGACGACGAAGATGAAGATGATGACGATCGTGGGGAAGAAGACGGCGGCG
GCGATTGACAGAAAGGGTGAACCTGAAGCCGCCCACCGCCGGCACTGCCA
CGTCTCCTTCGCCGGCGGCGGCGTCAGGCGGCAGTAACAAGTGCACGCGC
GAGCACCGCCGCGCCGGTGGCGGCACGTATACCACCTGAAGCGCCAATCT
CGCGCGGTTCTGCCGCGTGCGTTTGCTGCATCTTCATGATCTGCGCCGAG
ATTCCAAAGAAAGTGCCGGGCAGCGGCTGCAGGAGGCGACGCAGCTGGGT
GTGCGACGCTTTTCCCCGGCACACTATCGTTCGTTTTTGTTTTGTTCATA
CGCCGGCCTTCCACGTTTTTACAGCAACCAACTGCATGATTCGACCTGGA
ACCGCCGCGCAAACGGCAACATCTGCATGGAGAGCAGGCAGGGTGGGGCG
ACCTGAATGAATCGTTTCACATAAGAAGCAGAAGAGAGAGGAAGGAATTT
GGTCAGAAAAATCAATGGCGATTTAGACACGACAGTAGTCATTATGTAGT
GGGGTGTGGCGGGGAAGAGGGTGGTTTGCTTCCAAAATGACAGGCGGATT
CTCCCCATCTAGAGTGCGCGCCGACCAGAGGTGGGAGGGTTGCGATGCTG
GCGGCGGGGTGGCGGTATTGGGCAGCAAAGATTGCTTTGCCGCTGGGGAG
CTGCCGCTCTGCAGCGGGTGTCGTGCAGAGCGAGACAAAACGGCGACAAA
TGCCACGCGCACTGCAGCAAGGCAAATGCGGCACGAATTTGAATCGAGAC
GGTGGGTGACCAGAGGCGGGGACAAATGGTTTTCGCAGCGGGACAGGAAA
AGCAAGCCATAATAGGGTAAACGAGCATTGAATTCTGACGGTTGGCGCGG
CATCCTGTGTTGTCCTTTTTTCCATTCTTGATTCTTGCTCTTCTTTCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2004:1416..3914+

>mRNA_P-wetherbeei_contig2004.2.1 ID=mRNA_P-wetherbeei_contig2004.2.1|Name=mRNA_P-wetherbeei_contig2004.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1062bp|location=Sequence derived from alignment at P-wetherbeei_contig2004:1416..3914+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAATGCCCGCTGGGGAAATCCTCGAGTGAGTCGTTCTCCGCTGGC
GCCGGGGCCGGCGAGCGATCAAAAACAACAACAGCAACAGCGCACAAGCC
AAAGCCCGCCGGTGGCAATCGTGGCTGGCGGACTGCGCCGGGCATCGAGC
CGCCCAATATCCATCATCCGCAGCACGTCGGTGCCGGGGCAACTCCACGA
GGCGACCGGAACAACCCAGTACGGGAAATTCCAGGACTTCAACGACGATC
TCTCCGTTGTGACCTCGGCTGCGGCGGCGGCTGCCGTCGCGATGGGCTTC
TCCGGTGCGCGCGCTGTGGCCACGCCCGTGCTCGTGGCGCAGTCGCTGCC
GATGCCGGCCGCGCCGCTGATGGGCAGCTCGCTGCCGCCGTCGCGCTTCA
TGGACGACATGCCGCTGCTCCATCTTGGCCCGCAGGCCGATGCGGCCGAA
GTTCCGACCATCTGCGGTTCCCTCTCGGCCTCCCTTAATACCGTCGGGGT
CATGTACGCATCGTCCTGCCCGGCGACCCTCTGGGGCTTCCAGCGTGCCG
CCGCCATCCACCACCACGGCGGCGGCGCCGGCGCCGGCAAGCCGCCGTCC
CTGGCGGAGGAGGACGAAGACGAGGAGCGCCCCGAAAGCTTCTCTCCCGG
CAGCAACCGCGGCGCCGGCAGCCTGACGGGACTATCGGTCCTCGAGGCGA
TTGCGTCGTCGTCGTCGGGCCCCGCCATGTTCCTGCCGCCGCGTGACGGG
CGGGACTTCAGCGAGGACTCCTCGGCCGGCGACATGGGCCGCATGATCGG
TGGCTACGGTGGCGGCGAGGGCGGCGGCAGGCACACCATCGGAGACAGGG
ACGCCGCCGGCGTGGGCGTTAATGCTGGCCCCGACGGAGAGGACGGCGAC
GGCATCGACGCTCTGAATCCGCCGGGCGGCGTGTTCATGCTGGAGGAGCT
GGACGTCGGCGGGAGCATGGAGGGGGAGGCGGATGATGCCGCTACCGCCG
CGGCCGACGACGAAGATGAAGATGATGACGATCGTGGGGAAGAAGACGGC
GGCGGCGATTGA
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