mRNA_P-wetherbeei_contig20023.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20023.1.1
Unique NamemRNA_P-wetherbeei_contig20023.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20023.1.1 vs. uniprot
Match: A0A6L7TSX7_9CHLR (TIGR03668 family PPOX class F420-dependent oxidoreductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7TSX7_9CHLR)

HSP 1 Score: 121 bits (303), Expect = 1.780e-32
Identity = 67/138 (48.55%), Postives = 87/138 (63.04%), Query Frame = 1
Query:   34 LEQARVARLATADKDGKPHCVPVCFCHWE-----GRLFIALDEKPKRVEVKQLKRMRNIEENPQATLLVDHFDEDWQHLWFLMIESRATM----EILPERARQRLMEKYPQYRFQTLE--QAIVLEPQRCVAWQYKSE 414
            L  ARVARLATAD DG+PH +PVCF H +       ++I LD KPK  E+ +L+R+RNI  NPQA+L+VDH+DEDWQ L ++++  RA +    E     A   L EKYPQYR   L+    I L PQR  AW ++ E
Sbjct:   12 LANARVARLATADADGRPHVIPVCFIHADLGYGGDAIYIVLDRKPKTTELTRLRRVRNILANPQASLVVDHYDEDWQTLRYILVSCRAGLLNGDEPEAALAVTLLREKYPQYRQMALDGNPVIKLTPQRYTAWSFRGE 149          
BLAST of mRNA_P-wetherbeei_contig20023.1.1 vs. uniprot
Match: A0A2N5K0U8_9CHLR (TIGR03668 family PPOX class F420-dependent oxidoreductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2N5K0U8_9CHLR)

HSP 1 Score: 118 bits (296), Expect = 1.820e-31
Identity = 63/128 (49.22%), Postives = 85/128 (66.41%), Query Frame = 1
Query:   34 LEQARVARLATADKDGKPHCVPVCFCHWEGRLFIALDEKPKRVEVKQLKRMRNIEENPQATLLVDHFDEDWQHLWFLMIESRATMEIL--PERARQ--RLMEKYPQYRFQTLEQ--AIVLEPQRCVAW 399
            L   RVARLA+AD  G+PH VPVC+   +  +FIALDEKPKRV   +LKR+RNI ENP+  L+VDH+ +DW  L F++I   AT+  +  PE A     L E+YPQYR   +E+   I ++P++ VAW
Sbjct:   14 LTTQRVARLASADAAGRPHVVPVCYACDDQLVFIALDEKPKRVAAPELKRVRNIRENPRVALVVDHYSDDWTQLAFVLIHGTATLLAVGVPEHAHAVALLRERYPQYRAMRIEEQSVIAIQPEKVVAW 141          
BLAST of mRNA_P-wetherbeei_contig20023.1.1 vs. uniprot
Match: A0A536E2R7_9CHLR (TIGR03668 family PPOX class F420-dependent oxidoreductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536E2R7_9CHLR)

HSP 1 Score: 114 bits (286), Expect = 4.840e-30
Identity = 63/127 (49.61%), Postives = 81/127 (63.78%), Query Frame = 1
Query:   10 LQPEHLTKLEQARVARLATADKDGKPHCVPVCFCHWEGRLFIALDEKPKRVEVKQLKRMRNIEENPQATLLVDHFDEDWQHLWFLMIESRATMEILPE-----RARQRLMEKYPQYRFQTLEQAIVL 375
            L  E L   E  RVA LATAD  G+PH VPVCF + +GR++IA+DEKPKR    +LKR+RNIEENP+  +++D +DEDW  L  +++   AT  +L       RA  RL EKYPQYR   LE   V+
Sbjct:    2 LSSEELRFTESQRVAHLATADASGRPHVVPVCFAYLDGRIYIAIDEKPKRS--LRLKRLRNIEENPEVAIVLDRYDEDWSRLALVLVHGMAT--VLDRGTEHGRAIARLREKYPQYRTMALEDRPVI 124          
BLAST of mRNA_P-wetherbeei_contig20023.1.1 vs. uniprot
Match: A0A537JGS4_9BACT (TIGR03668 family PPOX class F420-dependent oxidoreductase n=2 Tax=Terrabacteria group bacterium ANGP1 TaxID=2569760 RepID=A0A537JGS4_9BACT)

HSP 1 Score: 114 bits (286), Expect = 4.980e-30
Identity = 63/127 (49.61%), Postives = 82/127 (64.57%), Query Frame = 1
Query:   34 LEQARVARLATADKDGKPHCVPVCFCHWEGRLFIALDEKPKRVEVKQLKRMRNIEENPQATLLVDHFDEDWQHLWFLMIESRATM-EILPERARQ--RLMEKYPQYRFQTLEQ--AIVLEPQRCVAW 399
            L +ARVARLATAD  G+PH VPVCF      ++  LDEKPKRV  ++L+R+RNIE NP+  L+VDH++EDW+ L F ++   A + E  P  AR    L EKYPQYR   LE    +V+ P + V W
Sbjct:   10 LREARVARLATADAGGQPHVVPVCFAVDGETIYTPLDEKPKRVAPRRLRRVRNIEANPRIALVVDHYEEDWRRLRFALVTGTARIIEDGPAHARAIALLREKYPQYRAMRLEDRPVLVISPHKVVTW 136          
BLAST of mRNA_P-wetherbeei_contig20023.1.1 vs. uniprot
Match: A0A535W1T6_9CHLR (TIGR03668 family PPOX class F420-dependent oxidoreductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535W1T6_9CHLR)

HSP 1 Score: 114 bits (285), Expect = 9.130e-30
Identity = 56/128 (43.75%), Postives = 81/128 (63.28%), Query Frame = 1
Query:   34 LEQARVARLATADKDGKPHCVPVCFCHWEGRLFIALDEKPKRVEVKQLKRMRNIEENPQATLLVDHFDEDWQHLWFLMIESRATM----EILPERARQRLMEKYPQYRFQTLEQ--AIVLEPQRCVAW 399
            ++  RVARLATAD +G PH +PVC+     R +  LDEKPKRV  +QL+R+RNIE  P+  L++D +D+DW  L +++++ RA +     +L  RA   L E+YPQYR   LE+   I + P   V+W
Sbjct:   15 IQAQRVARLATADAEGNPHVIPVCYAFDGERFYTPLDEKPKRVTARQLRRVRNIETRPEVALVIDQYDDDWSRLGYVLVQGRAELLQPEHVLHGRALLLLRERYPQYRTMALEKYGVIAISPGHIVSW 142          
BLAST of mRNA_P-wetherbeei_contig20023.1.1 vs. uniprot
Match: A0A2V9VVH3_9BACT (TIGR03668 family PPOX class F420-dependent oxidoreductase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9VVH3_9BACT)

HSP 1 Score: 113 bits (283), Expect = 1.730e-29
Identity = 60/129 (46.51%), Postives = 79/129 (61.24%), Query Frame = 1
Query:   31 KLEQARVARLATADKDGKPHCVPVCFCHWEGRLFIALDEKPKRVEVKQLKRMRNIEENPQATLLVDHFDEDWQHLWFLMIESRATMEILP---ERARQRLMEKYPQYRFQTLEQAIVL---EPQRCVAW 399
            KL+ ARVARLAT D    PH VP+CF       + A+D KPKRV   +L R+RNIE+ PQ  LLVDH++EDW  LW++++  +A +       ERA Q L  KYPQYR + L++   L    P+R  AW
Sbjct:   15 KLDAARVARLATLDDQQSPHLVPICFALDANVFYSAIDGKPKRVAPNRLARLRNIEKTPQVALLVDHYEEDWTLLWYVLVRGQAELVSAAGERERALQSLRAKYPQYRGEMLQEDAALLRITPERITAW 143          
BLAST of mRNA_P-wetherbeei_contig20023.1.1 vs. uniprot
Match: A0A535AVB0_9CHLR (TIGR03668 family PPOX class F420-dependent oxidoreductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535AVB0_9CHLR)

HSP 1 Score: 112 bits (279), Expect = 6.040e-29
Identity = 62/127 (48.82%), Postives = 83/127 (65.35%), Query Frame = 1
Query:   34 LEQARVARLATADKDGKPHCVPVCFCHWEGRLFIALDEKPKRVEVKQLKRMRNIEENPQATLLVDHFDEDWQHL-WFLMIESRATMEILPERARQ--RLMEKYPQYRFQTLEQAIVLE--PQRCVAW 399
            +E  RVA LATAD +G+PH VPVCF + +GR++IA+DEKPKR    +LKR+RNIE NP+  ++ D +DEDW  L W L+  + A +   PE AR    L EKYPQYR   LE+  V+    +R  +W
Sbjct:   13 IEFQRVAHLATADANGRPHVVPVCFAYVDGRIYIAIDEKPKRS--LRLKRLRNIEANPEVAIVFDRYDEDWTRLGWVLVRGTAAVLGYGPEHARTLAALREKYPQYRAMALEERPVIRITVERVSSW 137          
BLAST of mRNA_P-wetherbeei_contig20023.1.1 vs. uniprot
Match: A0A2V7BLG4_9BACT (TIGR03668 family PPOX class F420-dependent oxidoreductase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7BLG4_9BACT)

HSP 1 Score: 111 bits (278), Expect = 9.060e-29
Identity = 63/131 (48.09%), Postives = 85/131 (64.89%), Query Frame = 1
Query:   34 LEQARVARLATADKDGKPHCVPVCFCHWEGRLFIALDEKPKRVEVKQLKRMRNIEENPQATLLVDHFDEDWQHLWFLMIESRATMEI---LPERARQRLMEKYPQYRFQTL--EQAIVLE--PQRCVAWQY 405
            L Q+RVARL TAD+ G+P  VPVC+       F A+D KPKRV  + L+R+RNIEENPQ +L+VD +DEDW  L ++++E RA +     +  RA   L+ KY QYR   L  EQA V+   P+R +AW+Y
Sbjct:   11 LYQSRVARLGTADRAGRPLVVPVCYAFDARVCFSAIDAKPKRVAARDLRRVRNIEENPQVSLVVDRYDEDWSRLAWVIVEGRADLVTDGPVRTRAVDLLLAKYAQYRAMGLDREQATVIRITPERALAWRY 141          
BLAST of mRNA_P-wetherbeei_contig20023.1.1 vs. uniprot
Match: A0A537K8S0_9BACT (TIGR03668 family PPOX class F420-dependent oxidoreductase n=1 Tax=Terrabacteria group bacterium ANGP1 TaxID=2569760 RepID=A0A537K8S0_9BACT)

HSP 1 Score: 112 bits (279), Expect = 1.030e-28
Identity = 61/128 (47.66%), Postives = 80/128 (62.50%), Query Frame = 1
Query:   34 LEQARVARLATADKDGKPHCVPVCFCHWEGRLFIALDEKPKRVEVKQLKRMRNIEENPQATLLVDHFDEDWQHLWFLMIESRATMEILPER----ARQRLMEKYPQYRFQTLE--QAIVLEPQRCVAW 399
            L +ARV RLATAD  G+PH +PVCF      L+ A+DEKPKR   ++L+R+RNIE NPQ  L+VDH++EDW  L ++++   A + I   R    A   L EKYPQYR   LE    I + P+R  AW
Sbjct:    2 LAEARVGRLATADAKGRPHVIPVCFAFDGRHLYTAIDEKPKRAAPRRLRRVRNIEANPQVALVVDHYEEDWGRLRYVLVSGTARV-IADGREHAAAIALLREKYPQYRAMRLEGRPVITISPRRVAAW 128          
BLAST of mRNA_P-wetherbeei_contig20023.1.1 vs. uniprot
Match: A0A7V1W1E6_9CHLR (TIGR03668 family PPOX class F420-dependent oxidoreductase n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A7V1W1E6_9CHLR)

HSP 1 Score: 109 bits (273), Expect = 5.940e-28
Identity = 64/133 (48.12%), Postives = 80/133 (60.15%), Query Frame = 1
Query:   16 PEHLTKLEQARVARLATADKDGKPHCVPVCFCHWEGRLFIALDEKPKRVEVKQLKRMRNIEENPQATLLVDHFDEDWQHLWFLMIESRATMEILP-ER--ARQRLMEKYPQYRFQTLEQAIVLE--PQRCVAW 399
            PE    L   RV  LAT D  G+PH VPVCF    G L+IA+DEKPKRV  ++L+R+RN++ NP   L+VD +DEDW  L +L +  RAT+   P ER  A   L  +YPQYR   LE   +L   PQR V W
Sbjct:   10 PEQAAFLLAHRVGHLATVDAQGRPHNVPVCFALLGGHLYIAVDEKPKRVTPERLRRVRNVQANPAVCLVVDDYDEDWSRLAWLQVRGRATLVEDPAERTAALAALRARYPQYRAMALEGRPLLRITPQRWVDW 142          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20023.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L7TSX7_9CHLR1.780e-3248.55TIGR03668 family PPOX class F420-dependent oxidore... [more]
A0A2N5K0U8_9CHLR1.820e-3149.22TIGR03668 family PPOX class F420-dependent oxidore... [more]
A0A536E2R7_9CHLR4.840e-3049.61TIGR03668 family PPOX class F420-dependent oxidore... [more]
A0A537JGS4_9BACT4.980e-3049.61TIGR03668 family PPOX class F420-dependent oxidore... [more]
A0A535W1T6_9CHLR9.130e-3043.75TIGR03668 family PPOX class F420-dependent oxidore... [more]
A0A2V9VVH3_9BACT1.730e-2946.51TIGR03668 family PPOX class F420-dependent oxidore... [more]
A0A535AVB0_9CHLR6.040e-2948.82TIGR03668 family PPOX class F420-dependent oxidore... [more]
A0A2V7BLG4_9BACT9.060e-2948.09TIGR03668 family PPOX class F420-dependent oxidore... [more]
A0A537K8S0_9BACT1.030e-2847.66TIGR03668 family PPOX class F420-dependent oxidore... [more]
A0A7V1W1E6_9CHLR5.940e-2848.12TIGR03668 family PPOX class F420-dependent oxidore... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20023contigP-wetherbeei_contig20023:390..815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog266117.Rxyl_0973
PFAMsNitroreductase
Model size426
Max annot lvl84995|Rubrobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.17e-26
EggNOG OGsCOG0778@1|root,COG3576@1|root,COG0778@2|Bacteria,COG3576@2|Bacteria,2I2U7@201174|Actinobacteria,4CU67@84995|Rubrobacteria
DescriptionNitroreductase family
Cds size426
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186188.9155588-CDS-P-wetherbeei_contig20023:389..8151683186188.9155588-CDS-P-wetherbeei_contig20023:389..815Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20023 390..815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20023.1.1prot_P-wetherbeei_contig20023.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20023 390..815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20023.1.1

>prot_P-wetherbeei_contig20023.1.1 ID=prot_P-wetherbeei_contig20023.1.1|Name=mRNA_P-wetherbeei_contig20023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
MQALQPEHLTKLEQARVARLATADKDGKPHCVPVCFCHWEGRLFIALDEK
PKRVEVKQLKRMRNIEENPQATLLVDHFDEDWQHLWFLMIESRATMEILP
ERARQRLMEKYPQYRFQTLEQAIVLEPQRCVAWQYKSEEAG*
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mRNA from alignment at P-wetherbeei_contig20023:390..815+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20023.1.1 ID=mRNA_P-wetherbeei_contig20023.1.1|Name=mRNA_P-wetherbeei_contig20023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig20023:390..815+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAGCCCTACAGCCCGAGCATCTCACCAAACTAGAGCAGGCGAGAGT TGCTCGTCTCGCCACCGCCGATAAAGATGGCAAGCCGCACTGTGTGCCGG TGTGCTTCTGTCACTGGGAGGGGCGGCTTTTTATCGCGCTCGACGAGAAG CCCAAGCGGGTTGAGGTTAAGCAACTGAAGCGTATGCGCAATATCGAGGA GAATCCGCAGGCGACGCTGCTCGTGGACCATTTCGATGAGGACTGGCAGC ATTTGTGGTTCTTGATGATCGAGAGCCGGGCCACCATGGAGATCCTTCCC GAGCGAGCCCGCCAGCGACTGATGGAGAAGTATCCGCAGTATCGTTTTCA GACTCTGGAACAGGCTATCGTGCTCGAGCCGCAGCGCTGCGTGGCCTGGC AGTATAAATCCGAGGAGGCCGGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20023:390..815+

>mRNA_P-wetherbeei_contig20023.1.1 ID=mRNA_P-wetherbeei_contig20023.1.1|Name=mRNA_P-wetherbeei_contig20023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig20023:390..815+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAGCCCTACAGCCCGAGCATCTCACCAAACTAGAGCAGGCGAGAGT
TGCTCGTCTCGCCACCGCCGATAAAGATGGCAAGCCGCACTGTGTGCCGG
TGTGCTTCTGTCACTGGGAGGGGCGGCTTTTTATCGCGCTCGACGAGAAG
CCCAAGCGGGTTGAGGTTAAGCAACTGAAGCGTATGCGCAATATCGAGGA
GAATCCGCAGGCGACGCTGCTCGTGGACCATTTCGATGAGGACTGGCAGC
ATTTGTGGTTCTTGATGATCGAGAGCCGGGCCACCATGGAGATCCTTCCC
GAGCGAGCCCGCCAGCGACTGATGGAGAAGTATCCGCAGTATCGTTTTCA
GACTCTGGAACAGGCTATCGTGCTCGAGCCGCAGCGCTGCGTGGCCTGGC
AGTATAAATCCGAGGAGGCCGGCTAG
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