mRNA_P-wetherbeei_contig2002.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2002.1.2
Unique NamemRNA_P-wetherbeei_contig2002.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2002.1.2 vs. uniprot
Match: A0A835Z5V8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V8_9STRA)

HSP 1 Score: 250 bits (638), Expect = 1.010e-77
Identity = 132/254 (51.97%), Postives = 168/254 (66.14%), Query Frame = 2
Query:   11 IAVALALVLGLGDAFAPAIARNVVSISAQRSCRAARALQMTKGGDVDEETRANPNKG--RKGPTWMYNQEGRSLAPWMEDQFDPENLARVEESRKRRAAAAQERTKNAVGALAEDPQQMELSGLGLKYKMVGG-EIELTWKTGDETGNKGFVVQKRRAKTEEWVQVASYKDWAPLNSKGAGGGIYTFMDPSTEEGAWVYRISDVNSDGSKNDLCQALIDVQTPAEAMQVKLAVAGFALVVIGTVIAGATLDPMQ 763
            +AV LAL      AF   ++    +   + SCR + AL+M +                 +KGPTWMYN+ G + APWM D FDPEN+A+VE + + R  A       +VG LA DPQ MELSGLGL  K V G ++EL WKTGDE GN GFVV KRR KT+EW Q+ASYKDWAPLNSKG  GG YTF+DP  E+G WVYR+SDVNS+GS+NDLCQALI+VQ+ ++A+Q K AVA F +VV+  + +   +DP+Q
Sbjct:   10 LAVCLALASFQAAAFTGPVSALRAAAVTKASCRRSAALRMAQEXXXXXXXXXXXXXXXVKKGPTWMYNKNGVAYAPWMVDTFDPENIAKVEAAMEARRLAKLNTVAESVGDLARDPQAMELSGLGLNIKQVNGNDVELEWKTGDEAGNLGFVVSKRRGKTDEWTQIASYKDWAPLNSKGEQGGRYTFVDPDCEQGTWVYRVSDVNSNGSRNDLCQALIEVQSASDALQAKAAVALFGVVVVAAIASAFLIDPLQ 263          
BLAST of mRNA_P-wetherbeei_contig2002.1.2 vs. uniprot
Match: D7FJQ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJQ9_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 5.980e-66
Identity = 114/220 (51.82%), Postives = 148/220 (67.27%), Query Frame = 2
Query:  101 SCRAARALQMTKGGDVDEETRANPNKGRKGPTWMYNQEGRSLAPWMEDQFDPENLARVEESRKRRAAAAQERTKNAVGALAEDPQQMELSGLGLKYKMVGGE-IELTWKTGDETGNKGFVVQKRRAKTEEWVQVASYKDWAPLNSKGAGGGIYTFMDPSTEEGAWVYRISDVNSDGSKNDLCQALIDVQTPAEAMQVKLAVAGFALVVIGTVIAGATLDP 757
            SCR  +  + T+G + D+       K  K P WM+N +G + APWM D FDPENLA+V  S + R          A+GALA DPQQMELSG GL  K V  E +ELTWKTG+E GN GF+V +R AKT+EW ++ASYKD+ PLNSKG GGGIYT+ D + + G WVYRISD++  G K+DLCQ LI++Q+ A+ +Q K+ VAG A+V+I    AG  +DP
Sbjct:   54 SCRMTKKTE-TEGAEGDK-------KKTKPPAWMFNDDGVAYAPWMVDAFDPENLAKVAASIEARKEKEANTVPEALGALARDPQQMELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVDLGTWVYRISDISKSGVKSDLCQTLIELQSGADELQTKIGVAGLAIVLIAAAAAGTFIDP 265          
BLAST of mRNA_P-wetherbeei_contig2002.1.2 vs. uniprot
Match: A0A6V1RAY1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RAY1_HETAK)

HSP 1 Score: 209 bits (532), Expect = 6.740e-62
Identity = 110/215 (51.16%), Postives = 136/215 (63.26%), Query Frame = 2
Query:  134 KGGDVDEETRAN-----PNKGRKGPTWMYNQEGRSLAPWMEDQFDPENLARVEESRKRRAAAAQERTKNAVGALAEDPQQMELSGLGLKYKMVGGEIELTWKTGDETGNKGFVVQKRRAKTEEWVQVASYKDWAPLNSKGAGGGIYTFMDPSTEEGAWVYRISDVNSDGSKNDLCQALIDVQTPAEAMQVKLAVAGFALVVIGTVIAGATLDPMQ 763
            K  D DEE   +       K RK P  M+N EG+  APWM D  D E   + +E R+ R AA +   K A GAL  DPQ MELSG+GLK KMVG E E++W TGDETGNKGF++ KRR  +++W  VASY DWAPLNSKG  GG YT+MD  TE+G W+YR+SDVN+ G  +DLCQAL++VQ   + M  K    G   V    + AG  LDP+Q
Sbjct:   47 KATDEDEEIITDLEAYEAEKRRKAPKGMFNAEGKPYAPWMMDSVDAEKAKQAQEDRRARKAAEK---KAAQGALLVDPQAMELSGVGLKTKMVGDECEISWGTGDETGNKGFIITKRRGGSDDWQVVASYTDWAPLNSKGPAGGQYTYMDSDTEQGTWIYRVSDVNTQGQTSDLCQALVEVQDQGQQMATKAFAVGIIGVFGALLAAGLFLDPLQ 258          
BLAST of mRNA_P-wetherbeei_contig2002.1.2 vs. uniprot
Match: A0A7S2RGG7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGG7_9STRA)

HSP 1 Score: 179 bits (453), Expect = 4.580e-50
Identity = 88/189 (46.56%), Postives = 123/189 (65.08%), Query Frame = 2
Query:  200 MYNQEGRSLAPWMEDQFDPENLARVEESRKRRAAAAQERTKNAVGAL-AEDPQQMELSGLGLKYKMVGGEIELTWKTGDETGNKGFVVQKRRAKTEEWVQVASYKDWAPLNSKGAGGGIYTFMDPSTEEGAWVYRISDVNSDGSKNDLCQALIDVQTPAEAMQVKLAVAGFALVVIGTVIAGATLDPMQ 763
            MYN+ G + APWM +Q D E     +E RK R    +E ++  +GA+ + D    EL+G GLKY+ VG E+EL+W T  E  N G+ VQKR A++E+W+ +ASY+DWAPL SKGA GG Y+F+DP++E+G W+YRI DV+  G    LCQAL++VQ+  E     +   GFA +  G V AG  +DP+Q
Sbjct:   76 MYNENGVAYAPWMVNQIDEEAYLAAKELRKMRKKRDREASEAKIGAMVSSDVAADELAGSGLKYRFVGEEVELSWSTNTEPDNLGYKVQKRVARSEDWIDIASYEDWAPLASKGAAGGTYSFLDPNSEQGDWIYRIIDVDGSGRSTILCQALVEVQSAGERTLQLVLAGGFAAIFAGLVAAGTMIDPIQ 264          
BLAST of mRNA_P-wetherbeei_contig2002.1.2 vs. uniprot
Match: A0A7S2FT64_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FT64_9STRA)

HSP 1 Score: 173 bits (439), Expect = 8.000e-48
Identity = 91/188 (48.40%), Postives = 117/188 (62.23%), Query Frame = 2
Query:  200 MYNQEGRSLAPWMEDQFDPENLARVEESRKRRAAAAQERTKNAVGA-LAEDPQQMELSGLGLKYKMVGGEIELTWKTGDETGNKGFVVQKRRAKTEEWVQVASYKDWAPLNSKGAGGGIYTFMDPSTEEGAWVYRISDVNSDGSKNDLCQALIDVQTPAEAMQVKLAVAGFALVVIGTVIAGATLDPM 760
            M+N+ G + APWM +Q D E     +E RK R  A +    +  GA    D Q  ELSGLGL YK+ G E+EL+W T  E  N G+ VQKR A++EEW  VASY+DWAPLNSKG GGG YT +DP +E G W+YRI DV+  G    LCQAL++VQ+  E +   +   GFA +  G + AG  LDP+
Sbjct:   90 MFNENGVAYAPWMVNQIDEEAYVTAKELRKMRKNAQKAADASKEGAYFTTDLQADELSGLGLNYKLNGEEVELSWSTDTEPDNLGYKVQKRAARSEEWFTVASYEDWAPLNSKGKGGGTYTLIDPESETGDWIYRIVDVDRAGRNTVLCQALVEVQSQGEKVLSTVLAVGFAAIFSGFMAAGGLLDPI 277          
BLAST of mRNA_P-wetherbeei_contig2002.1.2 vs. uniprot
Match: A0A1Z5K495_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K495_FISSO)

HSP 1 Score: 166 bits (419), Expect = 3.630e-45
Identity = 91/248 (36.69%), Postives = 144/248 (58.06%), Query Frame = 2
Query:   23 LALVLGLGDAFAPAIARNVVSISAQRSCRAARALQMTKGGDVDEETRANPNKGRKGPTWMYNQEGRSLAPWME-DQFDPENLARVEESRKRRAAAAQERTKNAVGALAEDPQQMELSGLGLKYKMVGGEIELTWKTGDETGNKGFVVQKRRAKTEEWVQVASYKDWAPLNSKGAGGGIYTFMDPSTEEGAWVYRISDVNSDGSKNDLCQALIDVQTPAEAMQVKLAVAGFALVVIGTVIAGATLDPMQ 763
            LAL++G   AFAP     V S  A +        + T   +++E  +    K ++    + N+ G   APWM+    D + + +V   +       +E+     G+L  D    ELSG GLKYK++ G +EL W TG+E+  +GF+V++R AKTE++  +ASY ++ PL SKG+ GG+Y F+D   E G WVYR+++ + +GS+NDL Q L+++QT  E M  K+A  GF ++ +  V+AGA +DP+Q
Sbjct:   10 LALLIGQSAAFAPL--PRVSSSVATKPQSTTVCFEKTLEEEIEEMVQQELKKTKRMSN-LRNERGIEYAPWMKITAEDEKEIRKVMRDKAEARRKRKEQETQVQGSLLRDSAFQELSGTGLKYKVIDGAVELEWTTGEESNTQGFIVKRRPAKTEKFEVLASYANYGPLQSKGSSGGVYRFLDDQVEPGGWVYRVTEKDKNGSENDLSQCLVEIQTNEEQMATKVAAIGFGVLAVAAVVAGALIDPLQ 254          
BLAST of mRNA_P-wetherbeei_contig2002.1.2 vs. uniprot
Match: B8BXV5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXV5_THAPS)

HSP 1 Score: 162 bits (411), Expect = 4.370e-44
Identity = 87/191 (45.55%), Postives = 114/191 (59.69%), Query Frame = 2
Query:  200 MYNQEGRSLAPWMEDQFDPENLARV---EESRKRRAAAAQERTKNAVGALAEDPQQMELSGLGLKYKMVGGEIELTWKTGDETGNKGFVVQKRRAKTEEWVQVASYKDWAPLNSKGAGGGIYTFMDPSTEEGAWVYRISDVNSDGSKNDLCQALIDVQTPAEAMQVKLAVAGFALVVIGTVIAGATLDPMQ 763
            + N+ G   APWM    D EN  R    E +  RRA   Q R  +  G L  D Q  ELSG GL YK++ GE+EL W T  E   KGF+V++R AKT ++  +ASYKDW PL SKG  GGIY ++D +   G WVYR+S+ +S G++ D+CQ L++VQT  E  Q  +A  GFA+  +  VIAG   DPM 
Sbjct:   56 LRNENGVDYAPWMGISEDDENKIRALMKERTAARRARELQAR--DVTGNLFRDSQAQELSGTGLSYKIIDGEVELEWATKSEMDTKGFIVKRRAAKTNDYDVIASYKDWGPLASKGKEGGIYRYLDSTATPGGWVYRVSEEDSMGNQADICQCLVEVQTEDEQKQALIAGVGFAVFAVVAVIAGIAADPMN 244          
BLAST of mRNA_P-wetherbeei_contig2002.1.2 vs. uniprot
Match: A0A6U3NNR7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NNR7_9STRA)

HSP 1 Score: 162 bits (409), Expect = 2.030e-43
Identity = 87/190 (45.79%), Postives = 116/190 (61.05%), Query Frame = 2
Query:  200 MYNQEGRSLAPWMEDQFDPENLARV---EESRKRRAAAAQERTKNAVGALAEDPQQMELSGLGLKYKMVGGEIELTWKTGDETGNKGFVVQKRRAKTEEWVQVASYKDWAPLNSKGAGGGIYTFMDPSTEEGAWVYRISDVNSDGSKNDLCQALIDVQTPAEAMQVKLAVAGFALVVIGTVIAGATLDPM 760
            + N  G   APWM    D E   R    E++  RRA   QER+ +  G L  D Q  ELSG GL YK++ G++EL W T  E    GF+V++R AKTEE+  +ASY+DW PL+S+GA GGIY ++D +   G WVYRI++ ++ G+  DLCQ L+DVQT  E     +A  GFA+  I  V+AG  LDPM
Sbjct:   87 LRNANGVDYAPWMGISADDETKIRQLMKEKTAARRAREEQERSVS--GNLYFDSQAQELSGTGLNYKVIDGQVELEWATKQERNTAGFIVKRRPAKTEEFTTLASYEDWGPLSSQGADGGIYRYLDETVSPGGWVYRITECDASGNNADLCQCLVDVQTEEEQRGAIIAGVGFAVFAIAAVVAGIALDPM 274          
BLAST of mRNA_P-wetherbeei_contig2002.1.2 vs. uniprot
Match: A0A7S0AF72_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AF72_9STRA)

HSP 1 Score: 156 bits (394), Expect = 8.270e-43
Identity = 75/147 (51.02%), Postives = 98/147 (66.67%), Query Frame = 2
Query:  320 KNAVGALAEDPQQMELSGLGLKYKMVGGEIELTWKTGDETGNKGFVVQKRRAKTEEWVQVASYKDWAPLNSKGAGGGIYTFMDPSTEEGAWVYRISDVNSDGSKNDLCQALIDVQTPAEAMQVKLAVAGFALVVIGTVIAGATLDPM 760
            K+  G L  D Q  ELSG GL YK++GGE+EL W T  E+G KGF+V++R AKTEE+  +ASY DW PL SKGA GG+Y ++D +   G WVYRIS+ ++ G + DLCQ L+DVQT  E     +A  GF    +  V+AG TLDP+
Sbjct:    2 KSVSGNLYLDSQAQELSGTGLNYKVIGGEVELEWATKSESGTKGFIVKRRPAKTEEFSVIASYADWGPLQSKGADGGVYRYLDDTASPGGWVYRISECDNAGIEADLCQCLVDVQTEDEQRAAIIAAVGFVAFGVIAVVAGLTLDPL 148          
BLAST of mRNA_P-wetherbeei_contig2002.1.2 vs. uniprot
Match: A0A7S2KUZ9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KUZ9_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.910e-42
Identity = 85/191 (44.50%), Postives = 114/191 (59.69%), Query Frame = 2
Query:  200 MYNQEGRSLAPWMEDQFDPENLARV---EESRKRRAAAAQERTKNAVGALAEDPQQMELSGLGLKYKMVGGEIELTWKTGDETGNKGFVVQKRRAKTEEWVQVASYKDWAPLNSKGAGGGIYTFMDPSTEEGAWVYRISDVNSDGSKNDLCQALIDVQTPAEAMQVKLAVAGFALVVIGTVIAGATLDPMQ 763
            + N+ G   APWM      EN  R    E++  RR    QER  +  G L  D Q  ELSG GL YK++ GE+EL W T  E+  KGF+V++R AKT ++  +ASYKDW PL SKG  GG+Y F+D +   G WVYRIS+ +  G++ D+CQ L++VQT  E     +A  GFAL  +  V+AG  +DPM 
Sbjct:   95 LRNENGVEFAPWMGISEADENSIRALMREKTEARRKRQEQER--DVSGNLFRDSQAQELSGTGLTYKIIDGEVELEWATKSESDTKGFIVKRRVAKTNDYTVIASYKDWGPLASKGKEGGVYRFLDTTAGPGGWVYRISEEDKFGNEADICQCLVEVQTEDEQKAALIAGVGFALFAVVAVVAGIAVDPMN 283          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2002.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5V8_9STRA1.010e-7751.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FJQ9_ECTSI5.980e-6651.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V1RAY1_HETAK6.740e-6251.16Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2RGG7_9STRA4.580e-5046.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2FT64_9STRA8.000e-4848.40Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A1Z5K495_FISSO3.630e-4536.69Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
B8BXV5_THAPS4.370e-4445.55Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A6U3NNR7_9STRA2.030e-4345.79Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S0AF72_9STRA8.270e-4351.02Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2KUZ9_9STRA1.910e-4244.50Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2002contigP-wetherbeei_contig2002:249..2820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJQ9
Model size1211
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.04e-68
EggNOG OGs2CYRZ@1|root,2S61B@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_010550.1
Cds size639
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2002.1.2prot_P-wetherbeei_contig2002.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2002 766..2375 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186188.7751672-UTR-P-wetherbeei_contig2002:248..3451683186188.7751672-UTR-P-wetherbeei_contig2002:248..345Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2002 249..345 +
1683186188.7833493-UTR-P-wetherbeei_contig2002:735..7651683186188.7833493-UTR-P-wetherbeei_contig2002:735..765Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2002 736..765 +
1683186188.8387454-UTR-P-wetherbeei_contig2002:2375..28201683186188.8387454-UTR-P-wetherbeei_contig2002:2375..2820Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2002 2376..2820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186188.7919421-CDS-P-wetherbeei_contig2002:765..9091683186188.7919421-CDS-P-wetherbeei_contig2002:765..909Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2002 766..909 +
1683186188.8011756-CDS-P-wetherbeei_contig2002:1114..12011683186188.8011756-CDS-P-wetherbeei_contig2002:1114..1201Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2002 1115..1201 +
1683186188.809661-CDS-P-wetherbeei_contig2002:1365..14551683186188.809661-CDS-P-wetherbeei_contig2002:1365..1455Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2002 1366..1455 +
1683186188.8187263-CDS-P-wetherbeei_contig2002:1809..20071683186188.8187263-CDS-P-wetherbeei_contig2002:1809..2007Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2002 1810..2007 +
1683186188.828951-CDS-P-wetherbeei_contig2002:2255..23751683186188.828951-CDS-P-wetherbeei_contig2002:2255..2375Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2002 2256..2375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2002.1.2

>prot_P-wetherbeei_contig2002.1.2 ID=prot_P-wetherbeei_contig2002.1.2|Name=mRNA_P-wetherbeei_contig2002.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=213bp
MTKGGDVDEETRANPNKGRKGPTWMYNQEGRSLAPWMEDQFDPENLARVE
ESRKRRAAAAQERTKNAVGALAEDPQQMELSGLGLKYKMVGGEIELTWKT
GDETGNKGFVVQKRRAKTEEWVQVASYKDWAPLNSKGAGGGIYTFMDPST
EEGAWVYRISDVNSDGSKNDLCQALIDVQTPAEAMQVKLAVAGFALVVIG
TVIAGATLDPMQ*
back to top

mRNA from alignment at P-wetherbeei_contig2002:249..2820+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2002.1.2 ID=mRNA_P-wetherbeei_contig2002.1.2|Name=mRNA_P-wetherbeei_contig2002.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2572bp|location=Sequence derived from alignment at P-wetherbeei_contig2002:249..2820+ (Phaeothamnion wetherbeei SAG_119_79)
TCCAGCATACATTGCCGTGGCGCTAGCCCTCGTATTGGGGCTCGGGGACG CCTTTGCGCCCGCAATCGCGCGAAACGTGGTTTCCATCAGCGCACAGGTG CTTTCGATTGGCAGGGAGGATGCTCATCTGATGCGCCTGTGCTCTCATTT AGCAAGCGTTATAATTCTAGTGTTCGCTTCCACCTCGCCTTCGAGATGTT AGTGAAAATCTTGTAGTCGCCTTTTGCCTCTTCCAGGGAAGGTATCGCGA AACGTTTCTTAGAACCAATTTGGAAGGAATGCGTGCGGTACCTTTCGAAG TACGTTGCTTGGAGCCGTTCCTCGCGCTATCGCGCTGTTAGCGGCATAGT CGTTGATTAGCCAAGAAGTTTGTCCAAAGAATCGTGCTGAAGTTGCGTTG GCATCTTGGTTAAGTGGCAATTCACGTGCTTGCATTGAAGGTGATGTTCT TTTAACTCTGCTCCCAACTTCGTATATTGCGTTGCAGCGATCATGCAGAG CAGCGCGGGCGCTGCAAATGACCAAGGGCGGGGATGTTGACGAAGAAACG AGGGCGAACCCGAATAAAGGACGCAAGGGCCCAACGTGGATGTACAACCA GGAGGGTCGCTCGCTGGCTCCATGGATGGAAGATCAGTTTGACCCGGAGA ACTTGGCGAGGGTAAGTCACCGGAAACATTCGTCTTTTTTCGCAGTACCT TGATGTCCGGCTTTTATGAAAGAAGTTTGCCTCACGCTGGCCTTTCCTCT TCTTCCGAATCGTCTTCTTATGGTTTGTGGCATCGAGACTTCTTTTGCCA ACCGCAAATGCTGTGAAAATGGAAAGCAAACTCGCCGCAACTGGCCAATC TGAACTCCTTGCACAGGTGGAGGAGAGCCGGAAGCGACGCGCTGCTGCGG CACAGGAGCGGACGAAGAACGCCGTAGGGGCGCTCGCGGAAGACCCGCAG CAGGTACACCGAGGGAGGAAAGATGACTATATGCCGTCTTCATCGGTGCA TCGCAAAAGTACGACCTCCTTGGCGAATCGTTGTTTTGCGGTCGGGTTTG ACCACTTGCTTAATTGCTTTACCACATTCGTTCATGTCCTGTGTTTTTTT CCGTTCCCTTTTCTCAGATGGAGCTATCGGGGCTGGGGCTCAAGTATAAG ATGGTTGGGGGCGAGATTGAGCTGACGTGGAAGACGGGTGACGAGACTGG CAACAAGGTGTGACTGCGGCGGTGGCGTCGCCTTACTGGGCTGATGGGTG ATGGGCGTCTCCGATTTGCTTTCTTGAAGGAGCCGAAGGGGCTATTGCAG CGTACGGTGGATTCGAAAGAGTGAAGGTCACAATGCGCGGCCCAGAGCGC CTTCGTGTGCCTTTTTTGTAATCGCGCTGTGGCCGAAAGCTTGCCAGCCT TATCAAGGGATGGTGTGACCCGGCAGCGGCAAGCAGAAACAGGAACGCAA TCGGCATTGCCGCCTACCCTTCTCACATCTATTTCCGTTCCCTTTTCCCT TTCTTTTACGTTGAAATCCCATCCTCCCGTGTTTACGAAACTCCCCACGC AATTCTTGCAGGGCTTTGTGGTGCAGAAGCGGCGGGCCAAGACGGAAGAG TGGGTGCAAGTGGCGTCGTACAAGGATTGGGCGCCGCTCAATTCCAAGGG TGCGGGCGGCGGCATCTACACGTTCATGGACCCGAGCACGGAGGAGGGCG CCTGGGTGTACCGCATCTCGGACGTCAACAGCGACGGCTCCAAGAATGAT CTCTGCCAGGTGAGCACGCAGGGATACCTGGGGAAAGGGGCGCTGGGGAA TAAAACTTTGGGCAGCGTAAATTGTGCACTTATGCATTAGCCAAGCCAGC TGAGGTTGCAGTAGAAGAAATGCCAGACGGTTGTAAGTAGACTATTCTCC CAAAGCATCCTTCCCTAGCACCCTTCCTGGCTCGCATCTTCTAGAACAAT TTCCCGAAGCTGCCTACCCTTCTCTTCCGTTGCCGCATCGTTCCGTCCGT TTTGCAGGCCCTGATCGACGTGCAGACCCCGGCAGAGGCGATGCAGGTGA AGCTGGCAGTCGCCGGCTTTGCCCTCGTTGTCATCGGCACCGTCATCGCC GGCGCGACTCTCGACCCCATGCAGTAACGAGGGAAGTCGACGGCGTCACG GTGGGGCGCGCTGGCGGACGGATGGCTGCTGACAACGGCTGCGCCATCTC TCTGGCGCTGGTGTTGGAGTTACATCGCCAATCGCAAAAGGATAGCATGG CGCGGGAGTCGGGTTAGATTTGGCTCAGTTCGTTGAAAAGAGGTGATTAC AAGAGGCAGTGCCTGGTAATTGGGCGGGTTCATAAAGTAGAATTGGTTGG CGCGTGCTACGCACTGGCGCCCCTATGTGTTCGACTGGAAAGAGTCTTGT TATTTGTCCTCTCTCTTGGGATCCGGAGGCGGCCTACCAGAGAAAGATTC GTCTTGTCACCATAATTCGTCCAAGGCCGCGAACGCCCGCCTCCAATCGC GCGCAAGAAGTAGGCCGTCGCAGGAAAAATCTTCTTGTGTTTCGTTGCTG GATGAAAGAGCTTAGAGCGGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig2002:249..2820+

>mRNA_P-wetherbeei_contig2002.1.2 ID=mRNA_P-wetherbeei_contig2002.1.2|Name=mRNA_P-wetherbeei_contig2002.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=639bp|location=Sequence derived from alignment at P-wetherbeei_contig2002:249..2820+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCAAGGGCGGGGATGTTGACGAAGAAACGAGGGCGAACCCGAATAA
AGGACGCAAGGGCCCAACGTGGATGTACAACCAGGAGGGTCGCTCGCTGG
CTCCATGGATGGAAGATCAGTTTGACCCGGAGAACTTGGCGAGGGTGGAG
GAGAGCCGGAAGCGACGCGCTGCTGCGGCACAGGAGCGGACGAAGAACGC
CGTAGGGGCGCTCGCGGAAGACCCGCAGCAGATGGAGCTATCGGGGCTGG
GGCTCAAGTATAAGATGGTTGGGGGCGAGATTGAGCTGACGTGGAAGACG
GGTGACGAGACTGGCAACAAGGGCTTTGTGGTGCAGAAGCGGCGGGCCAA
GACGGAAGAGTGGGTGCAAGTGGCGTCGTACAAGGATTGGGCGCCGCTCA
ATTCCAAGGGTGCGGGCGGCGGCATCTACACGTTCATGGACCCGAGCACG
GAGGAGGGCGCCTGGGTGTACCGCATCTCGGACGTCAACAGCGACGGCTC
CAAGAATGATCTCTGCCAGGCCCTGATCGACGTGCAGACCCCGGCAGAGG
CGATGCAGGTGAAGCTGGCAGTCGCCGGCTTTGCCCTCGTTGTCATCGGC
ACCGTCATCGCCGGCGCGACTCTCGACCCCATGCAGTAA
back to top