mRNA_P-wetherbeei_contig20019.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20019.1.1
Unique NamemRNA_P-wetherbeei_contig20019.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20019.1.1 vs. uniprot
Match: A0A7Z9UCG0_9BACT (Lytic transglycosylase domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9UCG0_9BACT)

HSP 1 Score: 148 bits (374), Expect = 1.060e-42
Identity = 73/142 (51.41%), Postives = 99/142 (69.72%), Query Frame = 1
Query:   55 WICSFNRRLPQQVAGMYAATVFQYSRYYRIDPRLVLAIVGAESGFEKDAISKVGAIGLGQLMPGTAAQMGITNPRDPAQNLLGCVRYLYTEMKRWSGYPDQLPRVVASYNAGAGAVQQYNGVPPYAETKAYVVYVHSLYREL 480
            WI  +N+ +    A + + T+ ++S  + +DPRLV+A+V AES F +DA S VGA GLGQLMPGTAA +G+T+P DP+QNL G VRYL  +++RW          +ASYNAG GAVQ+Y G+PPY ET+ YV YV  L++EL
Sbjct:    6 WIIDYNKGISLAEADLISRTIVRFSLQHDVDPRLVVALVAAESAFRRDARSPVGAQGLGQLMPGTAAMLGVTDPWDPSQNLSGTVRYLSRQLRRWD---QDASLALASYNAGPGAVQRYGGIPPYRETREYVSYVLGLHQEL 144          
BLAST of mRNA_P-wetherbeei_contig20019.1.1 vs. uniprot
Match: A0A7V1M8F9_9BACT (Lytic transglycosylase domain-containing protein n=3 Tax=Bacteria TaxID=2 RepID=A0A7V1M8F9_9BACT)

HSP 1 Score: 139 bits (351), Expect = 8.690e-39
Identity = 76/153 (49.67%), Postives = 105/153 (68.63%), Query Frame = 1
Query:   58 ICSFNRRL-PQQVAGMYAATVFQYSRYYRIDPRLVLAIVGAESGFEKDAISKVGAIGLGQLMPGTAAQMGITNPRDPAQNLLGCVRYLYTEMKRWSG---YPD------QLPRVVASYNAGAGAVQQYNGVPPYAETKAYVVYVHSLYRELGG 486
            I  FN +L PQQV  +   ++  +S YYR+DPRLV+A+V AESGF  DA+S+ GA+GLGQLMPGTA  +G++NP DP QNL G +R L+  +  +SG   Y +       +   +A+YNAG+GAV++Y GVPPY ET+ YV  V +LY++L G
Sbjct:   44 ISRFNPKLKPQQVESI-TNSILAFSWYYRVDPRLVVAMVLAESGFRPDAVSRAGAMGLGQLMPGTARGLGVSNPFDPVQNLAGAIRLLHGHLNTYSGGRAYREGTVSWNDIILAMAAYNAGSGAVRKYGGVPPYRETQTYVKRVIALYKQLCG 195          
BLAST of mRNA_P-wetherbeei_contig20019.1.1 vs. uniprot
Match: A0A7X6XIF2_9BACT (Lytic transglycosylase domain-containing protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7X6XIF2_9BACT)

HSP 1 Score: 144 bits (362), Expect = 1.500e-38
Identity = 74/152 (48.68%), Postives = 100/152 (65.79%), Query Frame = 1
Query:   37 VEEWYKWICSFNRRLPQQVAGMYAATVFQYSRYYRIDPRLVLAIVGAESGFEKDAISKVGAIGLGQLMPGTAAQMGITNPRDPAQNLLGCVRYLYTEMKRWSGYP--DQLPRVVASYNAGAGAVQQYNGVPPYAETKAYVVYVHSLYRELGG 486
            ++ + K +  FN RL  Q A   A ++  YS +Y IDPRLV+A++  ESGF   A S  GA+GLGQLMPGTAA +G+ N  DP +N+ G V+ L   +K ++G P  +QL   +ASYNAG+GAV++Y GVPPY ET+ Y+V V  LY  L G
Sbjct:  218 IQSYAKAVRYFNPRLATQQAEQIARSILAYSVHYEIDPRLVVAVIAVESGFSTTATSPKGAMGLGQLMPGTAAGLGVRNAYDPVENIWGAVKLLRGHLKAYAGRPFWEQLSLALASYNAGSGAVKKYKGVPPYRETQRYIVKVRQLYEHLCG 369          
BLAST of mRNA_P-wetherbeei_contig20019.1.1 vs. uniprot
Match: A0A7V4ENT7_9BACT (Lytic transglycosylase domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V4ENT7_9BACT)

HSP 1 Score: 136 bits (343), Expect = 1.860e-37
Identity = 68/136 (50.00%), Postives = 90/136 (66.18%), Query Frame = 1
Query:   67 FNRRLPQQVAGMYAATVFQYSRYYRIDPRLVLAIVGAESGFEKDAISKVGAIGLGQLMPGTAAQMGITNPRDPAQNLLGCVRYLYTEMKRWSGYPDQLPRVVASYNAGAGAVQQYNGVPPYAETKAYVVYVHSLYR 474
            +N++LP   A   A  +  YS YY++DPRLV+A++  ES F   A+S  GA GLGQLMPGTA  +G++N  D  QN+ G VRYL  +  R+   P+ L  ++A+YNAG  AV +YNGVPPY ET+ YVV V  LYR
Sbjct:   66 YNKKLPDNEALRIARCIIYYSNYYKLDPRLVVAVIVQESRFNPSAVSHAGAQGLGQLMPGTARYLGVSNSFDVQQNIYGTVRYLREQYDRFQSNPNVLDYMLAAYNAGPEAVAKYNGVPPYRETRNYVVQVKKLYR 201          
BLAST of mRNA_P-wetherbeei_contig20019.1.1 vs. uniprot
Match: A0A7C4KEY2_9BACT (SLT domain-containing protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C4KEY2_9BACT)

HSP 1 Score: 138 bits (348), Expect = 8.380e-37
Identity = 73/152 (48.03%), Postives = 101/152 (66.45%), Query Frame = 1
Query:   58 ICSFNRRLPQQVAGMYAATVFQYSRYYRIDPRLVLAIVGAESGFEKDAISKVGAIGLGQLMPGTAAQMGITNPRDPAQNLLGCVRYLYTEMKRWS---GYPD------QLPRVVASYNAGAGAVQQYNGVPPYAETKAYVVYVHSLYRELGG 486
            I  FN RL  Q   +   ++  +S YYR+DPRLV+A+V AESGF  DA+S+ GA+GLGQLMPGTA  +G++NP DP QNL G +R L+  +  +S    Y +       +   +A+YNAG+GAV++Y GVPPY ET+ YV  V +LY++L G
Sbjct:  185 ISRFNPRLKPQQVEVITNSILAFSWYYRVDPRLVVAMVLAESGFRPDAVSRAGAMGLGQLMPGTARGLGVSNPFDPVQNLAGAIRLLHGHLNTYSRGRAYREGTVSWNDIILAMAAYNAGSGAVRKYGGVPPYRETQTYVRRVIALYKQLCG 336          
BLAST of mRNA_P-wetherbeei_contig20019.1.1 vs. uniprot
Match: A0A7C6TBF4_9BACT (Lytic transglycosylase domain-containing protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C6TBF4_9BACT)

HSP 1 Score: 130 bits (328), Expect = 1.060e-35
Identity = 69/143 (48.25%), Postives = 93/143 (65.03%), Query Frame = 1
Query:   67 FNRRLPQQVAGMYAATVFQYSRYYRIDPRLVLAIVGAESGFEKDAISKVGAIGLGQLMPGTAAQMGITNPRDPAQNLLGCVRYLYTEMKRWSGYP--DQLPRVVASYNAGAGAVQQYNGVPPYAETKAYVVYVHSLYRELGGK 489
            FN RL +      A ++  YS ++ ID RLV+A++  ESGF+  A S  GA+GLGQLMPGTAA +G+ N  DP +N+ G V+ L   +K+ +  P  +QL   +ASYNAGAGAV++Y GVPPY ET+ YV  V  LY  L G+
Sbjct:   20 FNPRLSEAQQDAIARSILAYSAHFGIDARLVVAVIAVESGFKPTATSHKGAMGLGQLMPGTAAGLGVRNAYDPVENIYGAVKLLCGHLKQHADKPFWEQLKLALASYNAGAGAVRKYGGVPPYRETQRYVAKVARLYAHLCGQ 162          
BLAST of mRNA_P-wetherbeei_contig20019.1.1 vs. uniprot
Match: A0A7C3VQ79_9BACT (Lytic transglycosylase domain-containing protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C3VQ79_9BACT)

HSP 1 Score: 131 bits (330), Expect = 3.210e-35
Identity = 67/144 (46.53%), Postives = 91/144 (63.19%), Query Frame = 1
Query:   58 ICSFNRRLPQQVAGMYAATVFQYSRYYRIDPRLVLAIVGAESGFEKDAISKVGAIGLGQLMPGTAAQMGITNPRDPAQNLLGCVRYLYTEMKRWSGYPDQLPRVVASYNAGAGAVQQYNGVPPYAETKAYVVYVHSLYRELGGK 489
            I  FN RL  +      A++  YS +Y +DPRL++A++  ESGF   A S  GA+GLGQLMPGTA  +G+ NP DP QN+ GC+R +   +++  G    L   +A YNAG+GAV++Y G+PPY ET+ YV  V  LY  L GK
Sbjct:   91 IHRFNPRLNDRQLDTITASILAYSEHYGVDPRLIVALILVESGFRTGATSSKGAMGLGQLMPGTARGLGVVNPYDPVQNIAGCIRLMRGHLEKQDG---DLQLALACYNAGSGAVKKYGGIPPYRETQDYVRKVTWLYMRLCGK 231          
BLAST of mRNA_P-wetherbeei_contig20019.1.1 vs. uniprot
Match: A0A2M7AFV7_9BACT (Lytic transglycosylase domain-containing protein n=1 Tax=Armatimonadetes bacterium CG07_land_8_20_14_0_80_59_28 TaxID=1973917 RepID=A0A2M7AFV7_9BACT)

HSP 1 Score: 130 bits (326), Expect = 4.710e-35
Identity = 64/143 (44.76%), Postives = 91/143 (63.64%), Query Frame = 1
Query:   52 KWICSFNRRLPQQVAGMYAATVFQYSRYYRIDPRLVLAIVGAESGFEKDAISKVGAIGLGQLMPGTAAQMGITNPRDPAQNLLGCVRYLYTEMKRWSGYPDQLPRVVASYNAGAGAVQQYNGVPPYAETKAYVVYVHSLYREL 480
            K I  FN +L        A  + +Y     +DPRLV+A++ AES F  +A S  GA+GLGQLMPGTAA MG++N  DP QNL   +R +   +K++  + D   R +A+YNAG+GAV++Y GVPPY ET  Y+  ++ LY++L
Sbjct:   46 KTIQQFNPKLDDARLTQLADLILRYGYQSNVDPRLVVAVIAAESNFRLEATSPSGAMGLGQLMPGTAAGMGVSNAYDPEQNLRAAIRIISGHLKKYGNHSDGFYRALAAYNAGSGAVRKYGGVPPYRETVNYIWKIYGLYKQL 188          
BLAST of mRNA_P-wetherbeei_contig20019.1.1 vs. uniprot
Match: A0A7Y5B5C6_9BACT (Lytic transglycosylase domain-containing protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7Y5B5C6_9BACT)

HSP 1 Score: 134 bits (336), Expect = 5.660e-35
Identity = 74/155 (47.74%), Postives = 102/155 (65.81%), Query Frame = 1
Query:   43 EWYKWICSFNRRLPQQVAGMYAATVFQYSRYYRIDPRLVLAIVGAESGFEKDAISKVGAIGLGQLMPGTAAQMGITNPRDPAQNLLGCVRYLYTEMKRW---SGYPDQLPRVV---ASYNAGAGAVQQYNGVPPYAETKAYVVYVHSLYRELGGK 489
            E+Y  +  FN RL    A   A  +  YS +Y +DPRLV+A+V AESGF  +A S+ GA+GLGQLMPGTA  +G++N  DP QNL G VR L   ++++   +G  D    VV   A+YNAG+GAV+++ GVPPY ET+AYV  V  +Y++L G+
Sbjct:  189 EYYNAVRHFNPRLTDAQAREIANAILTYSCHYEVDPRLVMALVLAESGFNPNATSRKGAMGLGQLMPGTAKGLGVSNAYDPKQNLAGSVRLLRGHLEKYWNQTGRKDSWDHVVLTLAAYNAGSGAVRKHGGVPPYKETQAYVDKVIRIYKQLCGQ 343          
BLAST of mRNA_P-wetherbeei_contig20019.1.1 vs. uniprot
Match: A0A2H5WXW1_9BACT (Endo-type membrane-bound lytic murein transglycosylase A n=1 Tax=bacterium HR15 TaxID=2035410 RepID=A0A2H5WXW1_9BACT)

HSP 1 Score: 133 bits (334), Expect = 1.190e-34
Identity = 71/154 (46.10%), Postives = 101/154 (65.58%), Query Frame = 1
Query:   46 WYKWICSFNRRLPQQVAGMYAATVFQYSRYYRIDPRLVLAIVGAESGFEKDAISKVGAIGLGQLMPGTAAQMGITNPRDPAQNLLGCVRYLYTEMKRW----SGYPDQLPRVV---ASYNAGAGAVQQYNGVPPYAETKAYVVYVHSLYRELGG 486
            +Y+ I  FN RLP Q A   A  + ++S +Y +DPR ++AIV  ESGF  +A S+ GA+GLGQLMPGTA  +G+ +P DP QNL G VR +   ++R+     G P+    VV   A+YNAG+GAV+++ GVPPY ET+ Y+  V ++Y+ L G
Sbjct:  191 YYQAIRQFNPRLPAQQAEQIARAILRFSAHYGVDPRFIMAIVLVESGFNPNATSRKGAMGLGQLMPGTARGLGVVDPYDPIQNLAGTVRLVRGHLERYWQQVGGDPNTWEHVVLALAAYNAGSGAVRKHGGVPPYKETQNYIRKVIAVYKRLCG 344          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20019.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Z9UCG0_9BACT1.060e-4251.41Lytic transglycosylase domain-containing protein n... [more]
A0A7V1M8F9_9BACT8.690e-3949.67Lytic transglycosylase domain-containing protein n... [more]
A0A7X6XIF2_9BACT1.500e-3848.68Lytic transglycosylase domain-containing protein n... [more]
A0A7V4ENT7_9BACT1.860e-3750.00Lytic transglycosylase domain-containing protein n... [more]
A0A7C4KEY2_9BACT8.380e-3748.03SLT domain-containing protein n=1 Tax=Armatimonade... [more]
A0A7C6TBF4_9BACT1.060e-3548.25Lytic transglycosylase domain-containing protein n... [more]
A0A7C3VQ79_9BACT3.210e-3546.53Lytic transglycosylase domain-containing protein n... [more]
A0A2M7AFV7_9BACT4.710e-3544.76Lytic transglycosylase domain-containing protein n... [more]
A0A7Y5B5C6_9BACT5.660e-3547.74Lytic transglycosylase domain-containing protein n... [more]
A0A2H5WXW1_9BACT1.190e-3446.10Endo-type membrane-bound lytic murein transglycosy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20019contigP-wetherbeei_contig20019:639..1130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog661478.OP10G_1626
Preferred namemltC
PFAMsDUF3393,SLT
Model size492
Max annot lvl2|Bacteria
KEGG koko:K08306,ko:K08308,ko:K08309
Hectar predicted targeting categoryother localisation
GOsGO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008932,GO:0008933,GO:0009056,GO:0009057,GO:0009253,GO:0009279,GO:0009987,GO:0016020,GO:0016740,GO:0016757,GO:0019867,GO:0030203,GO:0030288,GO:0030312,GO:0030313,GO:0031224,GO:0031225,GO:0031975,GO:0033554,GO:0034599,GO:0042221,GO:0042597,GO:0043170,GO:0044425,GO:0044462,GO:0044464,GO:0046677,GO:0050896,GO:0051716,GO:0061783,GO:0070887,GO:0071236,GO:0071704,GO:0071944,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575
Exons1
Evalue2.25e-31
EggNOG OGsCOG0741@1|root,COG0741@2|Bacteria
Descriptionlytic transglycosylase activity
Cds size492
COG categoryM
CAZyGH23
BiGG ReactioniAF1260.b1193,iB21_1397.B21_01178,iBWG_1329.BWG_1018,iECBD_1354.ECBD_2429,iECB_1328.ECB_01168,iECDH10B_1368.ECDH10B_1246,iECDH1ME8569_1439.ECDH1ME8569_1132,iECD_1391.ECD_01168,iEcDH1_1363.EcDH1_2455,iEcolC_1368.EcolC_2432,iG2583_1286.G2583_3622,iJO1366.b1193,iUMNK88_1353.UMNK88_1507,iUMNK88_1353.UMNK88_3661,iY75_1357.Y75_RS06225
BRITEko00000,ko01000,ko01011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186188.751182-CDS-P-wetherbeei_contig20019:638..11301683186188.751182-CDS-P-wetherbeei_contig20019:638..1130Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20019 639..1130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20019.1.1prot_P-wetherbeei_contig20019.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20019 639..1130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20019.1.1

>prot_P-wetherbeei_contig20019.1.1 ID=prot_P-wetherbeei_contig20019.1.1|Name=mRNA_P-wetherbeei_contig20019.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
DPNVVTPQEEREVEEWYKWICSFNRRLPQQVAGMYAATVFQYSRYYRIDP
RLVLAIVGAESGFEKDAISKVGAIGLGQLMPGTAAQMGITNPRDPAQNLL
GCVRYLYTEMKRWSGYPDQLPRVVASYNAGAGAVQQYNGVPPYAETKAYV
VYVHSLYRELGGK*
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mRNA from alignment at P-wetherbeei_contig20019:639..1130+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20019.1.1 ID=mRNA_P-wetherbeei_contig20019.1.1|Name=mRNA_P-wetherbeei_contig20019.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig20019:639..1130+ (Phaeothamnion wetherbeei SAG_119_79)
GACCCCAACGTTGTGACCCCGCAAGAAGAGCGCGAAGTCGAAGAGTGGTA CAAGTGGATCTGCTCCTTCAATCGCCGCCTCCCCCAGCAGGTCGCCGGGA TGTATGCCGCCACCGTCTTCCAATACAGCCGCTACTACCGCATCGACCCG CGCCTGGTTCTGGCCATCGTAGGCGCTGAGTCGGGATTCGAAAAGGATGC CATTTCCAAGGTGGGAGCCATCGGCCTCGGCCAGTTGATGCCGGGCACCG CGGCCCAGATGGGTATCACCAATCCCCGCGATCCGGCCCAGAATCTTCTG GGCTGCGTGCGCTATCTCTACACTGAGATGAAGCGCTGGAGCGGCTATCC CGACCAGTTACCGCGCGTCGTGGCATCCTACAATGCGGGCGCGGGTGCAG TGCAGCAATACAACGGCGTCCCCCCTTACGCGGAGACGAAAGCGTATGTG GTCTACGTGCACTCCCTCTATCGGGAGCTGGGCGGGAAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20019:639..1130+

>mRNA_P-wetherbeei_contig20019.1.1 ID=mRNA_P-wetherbeei_contig20019.1.1|Name=mRNA_P-wetherbeei_contig20019.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig20019:639..1130+ (Phaeothamnion wetherbeei SAG_119_79)
GACCCCAACGTTGTGACCCCGCAAGAAGAGCGCGAAGTCGAAGAGTGGTA
CAAGTGGATCTGCTCCTTCAATCGCCGCCTCCCCCAGCAGGTCGCCGGGA
TGTATGCCGCCACCGTCTTCCAATACAGCCGCTACTACCGCATCGACCCG
CGCCTGGTTCTGGCCATCGTAGGCGCTGAGTCGGGATTCGAAAAGGATGC
CATTTCCAAGGTGGGAGCCATCGGCCTCGGCCAGTTGATGCCGGGCACCG
CGGCCCAGATGGGTATCACCAATCCCCGCGATCCGGCCCAGAATCTTCTG
GGCTGCGTGCGCTATCTCTACACTGAGATGAAGCGCTGGAGCGGCTATCC
CGACCAGTTACCGCGCGTCGTGGCATCCTACAATGCGGGCGCGGGTGCAG
TGCAGCAATACAACGGCGTCCCCCCTTACGCGGAGACGAAAGCGTATGTG
GTCTACGTGCACTCCCTCTATCGGGAGCTGGGCGGGAAGTAG
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