mRNA_P-wetherbeei_contig20.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20.1.1
Unique NamemRNA_P-wetherbeei_contig20.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20.1.1 vs. uniprot
Match: A0A7S2DEJ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DEJ6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.620e-5
Identity = 33/93 (35.48%), Postives = 54/93 (58.06%), Query Frame = 1 
Query: 1741 PEWAEQRGEGYLPRQRRFSLEYQWVGSRGALP-PPLSVERPTTVLGRMAGSAAGADAVVRHETVSRQHAVLLVDADGTPHLMDLGSSNGTFVS 2016
            P W+ +      P     + ++Q   S   LP  P+++ R   VLGR   +++  D ++ H ++SR+HAV++  +DGT HLMD GS+ GTFV+
Sbjct:    5 PSWSTK------PTGSATNSQFQVQKSGSTLPLEPINLGRENIVLGR---NSSMCDVILEHPSISRRHAVVMHRSDGTSHLMDFGSAQGTFVN 88
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2DEJ6_9STRA1.620e-535.48Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20contigP-wetherbeei_contig20:4596..8294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3699
Hectar predicted targeting categoryother localisation
Exons1
Cds size3276
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186187.8046465-UTR-P-wetherbeei_contig20:4595..46401683186187.8046465-UTR-P-wetherbeei_contig20:4595..4640Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20 4596..4640 -
1683186187.820724-UTR-P-wetherbeei_contig20:7916..82941683186187.820724-UTR-P-wetherbeei_contig20:7916..8294Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20 7917..8294 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186187.8132715-CDS-P-wetherbeei_contig20:4640..79161683186187.8132715-CDS-P-wetherbeei_contig20:4640..7916Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20 4641..7916 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20.1.1prot_P-wetherbeei_contig20.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20 4641..7916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20.1.1

>prot_P-wetherbeei_contig20.1.1 ID=prot_P-wetherbeei_contig20.1.1|Name=mRNA_P-wetherbeei_contig20.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=1092bp
MPGHPGVAAGPVAYPTPPLPGPHHPLLLPGPPLPGMDPAMASPPPGAANA
APKTKVPEWLLAQIKENAATAEREAQNKAKKEAYRLAAEATAFSGRSDGG
GGGGPGARAGSNSSIGSYDGYHHATARSRSPSPDPSSTHDAAAIAGGGSL
GGNGVGAKPAASSTPLFFPADAAAALASVMAEPARAPKGGGFSFAASTTT
VVRSAKKLPLSPPRQAGRSKFDTDSSDNDEEDAGSGGGSGGGRRKRTDDD
SSSAAAAAAAVEPEATAATSAVAVVPAGEGSAPAGGSGCLAAAGVSLEAA
TDPDPELRAALDAEVAQLFPALLGKLRARVISEVARRVVANAAVKGTEGG
GGGAAAANGASGVAAANGGVAVVSGSAAAATAVIAAAAKAVVSVMAAQGA
LGAVAGYGSSSDESDAETEVKTAKGNAATAPAAPPAAAPRRVAFATVKIG
QCTLPEWAEQRGEGYLPRQRRFSLEYQWVGSRGALPPPLSVERPTTVLGR
MAGSAAGADAVVRHETVSRQHAVLLVDADGTPHLMDLGSSNGTFVSDGGD
GDGGGGGSGDDGGGGGSGSSGHGRLSAKRLAAGVLYQLRHGDVFGLGDAR
LKLVAAWAEGEAAADGGTAAAVAPSSPAPVPLPEGAIKASVSSTQAPSAS
PAPAVATEPTSNDDGAGSVRAAPKVSGGAIVAPVTISAEAEAAAPIVSAA
AVAAAIDVAESGAEAAAKLEAEPAVEPELEPSTATKPEEKTAAAAAAANQ
TPDPARLAARMAGATAGVAGATAVAKGLTAFNGGNGATEPASATLAGRER
ASAAPAAAVNAAEATSPPKLVPPPAADSLTRDAAAELARRLCTGHSDGQD
AEAVPAAGSGSNCGDSGSGGSGSSCGGGGVGSSNSGAVAAATATVLNAMA
DGGEAATVATGEMGSTDGSRPEKEERGGGGDRSSKETERRRSGEGTEGER
KEKRRSRSDSRGRDRSREKKRRRRSRSNSRDRSGSRHREKSEHGKRGRSR
SSSRDMSSERGHRRDHNGKADRHRRRHRDGKEDQRRDKKERQQKEKGYHR
DRDNLSGGGSSDGGSGKRRRHHRHGDRRESGHRFRRSRSQQ*
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mRNA from alignment at P-wetherbeei_contig20:4596..8294-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20.1.1 ID=mRNA_P-wetherbeei_contig20.1.1|Name=mRNA_P-wetherbeei_contig20.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3699bp|location=Sequence derived from alignment at P-wetherbeei_contig20:4596..8294- (Phaeothamnion wetherbeei SAG_119_79)
ACAGGCTGGTGGAGAAGGTTTCTTCCCCGGAGGATACGGGTACCCGCAGG
AACAGACCCAACCCTATCCGCCGCATCCCAACAACGGTATGGAAGGATCG
GCGCGGTCTCGTGCATGCGTGCCGATCGCGCCTCTGAGGCTGGCGTTTCC
ATGGTGAGAATCACACAGCTCAAGCAAGAGGAAGGAAGCTGATTGTGGGA
ATGCTTTTCTGTCTTGGTTTGTTGTATTTCTCCGTTTTCTTGGCCGGCGG
CATTCGCAGGTCCGCTTCAAGGGCCGTGGCTGCCGGAGCAGCAGTGGCAG
CAGCAAGACTCGCAATGGCATCTGCAGCATCAATTCGTCCCAGGGCAGCA
TCCGGGCCCGTATGGAGCAGCCAGTGGAATGCCCGGGCACCCTGGTGTCG
CCGCCGGACCGGTAGCGTATCCCACGCCTCCGCTTCCAGGCCCGCACCAT
CCACTGCTACTGCCGGGCCCGCCCCTCCCGGGCATGGACCCAGCGATGGC
GTCGCCGCCGCCGGGGGCGGCGAACGCGGCGCCGAAAACCAAGGTTCCGG
AGTGGCTCTTGGCCCAGATCAAGGAGAATGCGGCGACAGCGGAGCGCGAG
GCACAAAACAAGGCGAAGAAAGAGGCGTACCGCCTGGCGGCAGAGGCCAC
GGCATTCAGCGGCCGCAGCGACGGCGGCGGCGGCGGCGGCCCCGGCGCCC
GCGCCGGCAGCAACAGCAGCATCGGCTCCTACGACGGATACCACCATGCC
ACCGCCCGATCGCGCTCCCCATCACCGGATCCATCGTCGACACACGACGC
GGCGGCCATTGCTGGCGGCGGCAGTCTCGGCGGAAATGGGGTTGGCGCAA
AGCCGGCGGCGTCATCGACGCCGCTGTTCTTCCCGGCGGACGCAGCGGCT
GCCCTGGCGTCGGTGATGGCGGAGCCCGCCCGTGCGCCGAAGGGCGGGGG
CTTCTCGTTCGCCGCCAGCACGACAACGGTAGTGCGCAGCGCTAAGAAGC
TGCCTCTGAGCCCGCCGCGACAGGCCGGGCGCAGCAAGTTTGACACGGAC
AGCAGCGATAACGATGAGGAGGATGCCGGCAGCGGCGGCGGCAGCGGCGG
CGGTAGAAGGAAGAGAACGGACGATGACTCCTCTTCTGCTGCTGCTGCCG
CTGCTGCCGTAGAGCCAGAAGCGACGGCGGCGACATCGGCGGTGGCAGTG
GTTCCAGCCGGTGAAGGCTCGGCGCCGGCTGGCGGCAGCGGTTGTCTAGC
TGCCGCGGGGGTCTCGCTGGAAGCGGCGACGGACCCGGATCCCGAACTGA
GGGCGGCGCTGGACGCGGAGGTGGCGCAGCTGTTCCCGGCGCTCCTCGGC
AAGCTGCGTGCGCGAGTCATTTCCGAGGTTGCCCGCAGGGTCGTGGCTAA
CGCCGCCGTCAAGGGCACTGAGGGCGGCGGCGGCGGCGCGGCGGCTGCGA
ACGGCGCCAGCGGCGTGGCGGCTGCGAACGGCGGCGTCGCCGTGGTGTCG
GGTTCTGCCGCCGCCGCCACCGCCGTCATTGCGGCTGCGGCAAAGGCCGT
GGTGTCGGTCATGGCAGCCCAGGGAGCGCTGGGCGCCGTCGCGGGCTACG
GCTCGTCGTCCGACGAATCTGACGCCGAAACAGAGGTAAAAACTGCCAAG
GGGAATGCGGCGACCGCACCGGCGGCACCACCGGCGGCGGCGCCCCGACG
TGTGGCGTTCGCTACCGTCAAGATCGGGCAGTGCACGCTTCCGGAATGGG
CGGAGCAGCGTGGCGAAGGGTACCTGCCGCGACAGCGGCGCTTTTCGCTG
GAGTACCAGTGGGTCGGCTCCCGCGGCGCGCTGCCGCCACCGTTGTCTGT
CGAACGGCCGACGACAGTCCTCGGACGTATGGCGGGATCAGCAGCCGGCG
CCGACGCTGTCGTCCGCCATGAGACTGTATCGCGGCAGCACGCCGTGCTC
CTGGTGGACGCGGACGGGACGCCGCACCTCATGGACCTCGGTTCGAGCAA
CGGCACGTTTGTCAGCGACGGCGGCGATGGTGACGGCGGCGGTGGCGGCA
GCGGCGACGACGGCGGCGGCGGTGGCAGCGGCTCTTCAGGCCATGGGCGG
CTGTCAGCGAAGCGGCTGGCGGCCGGCGTCCTTTATCAGCTGCGCCACGG
CGACGTTTTTGGTCTCGGCGATGCCCGTCTCAAGCTAGTGGCGGCCTGGG
CTGAGGGCGAGGCCGCGGCCGATGGAGGCACCGCCGCCGCTGTGGCTCCT
TCGTCGCCGGCGCCAGTGCCACTGCCAGAAGGTGCGATAAAGGCATCCGT
CAGCTCGACGCAGGCGCCGTCAGCTTCGCCGGCGCCTGCCGTTGCTACGG
AGCCTACGTCGAATGACGATGGCGCCGGATCTGTAAGGGCGGCGCCGAAG
GTGTCTGGTGGAGCTATCGTGGCACCAGTCACAATATCGGCGGAGGCAGA
GGCGGCGGCGCCAATAGTGTCGGCAGCAGCGGTGGCAGCGGCAATTGATG
TTGCGGAATCAGGCGCGGAAGCTGCAGCGAAGCTTGAGGCAGAGCCTGCA
GTAGAGCCTGAGTTAGAGCCGTCCACTGCCACCAAGCCGGAGGAAAAGAC
TGCTGCTGCCGCCGCTGCGGCAAACCAGACGCCTGACCCGGCCCGTTTGG
CGGCCAGAATGGCAGGCGCTACGGCCGGAGTGGCAGGCGCTACGGCCGTC
GCCAAAGGCTTGACCGCATTTAACGGGGGAAATGGCGCCACTGAACCCGC
ATCGGCCACTTTGGCAGGACGCGAGCGAGCGTCGGCCGCGCCGGCTGCCG
CCGTCAATGCAGCAGAGGCTACGTCGCCGCCGAAGCTCGTGCCGCCACCA
GCTGCGGACTCTCTGACGCGGGATGCGGCCGCGGAGCTTGCACGACGGCT
ATGCACGGGACATAGCGATGGGCAAGACGCCGAAGCGGTCCCTGCTGCAG
GTAGTGGCAGCAACTGCGGCGACAGCGGCAGTGGCGGCAGTGGCAGCAGT
TGCGGCGGCGGCGGCGTTGGCAGTAGCAACAGTGGCGCCGTCGCCGCTGC
CACCGCGACAGTCCTCAATGCTATGGCCGATGGCGGCGAAGCGGCGACGG
TTGCCACGGGCGAAATGGGAAGCACGGATGGCTCGCGTCCGGAAAAGGAG
GAGCGCGGCGGCGGCGGCGACAGAAGCAGCAAGGAGACGGAGCGAAGGAG
AAGCGGCGAGGGTACCGAGGGGGAGAGGAAGGAGAAGCGGCGCAGCCGCA
GCGACAGCCGCGGCCGCGACAGAAGCAGAGAGAAAAAGCGCCGCCGCCGC
AGCCGCAGCAACTCTCGCGACCGCAGCGGTAGCAGGCACCGCGAGAAATC
AGAGCATGGCAAGCGTGGCAGGAGCCGGAGCAGCAGCAGGGATATGAGCA
GCGAGCGCGGGCACCGTCGCGACCACAATGGCAAAGCGGATCGGCACCGG
CGCCGGCACCGCGACGGCAAGGAGGACCAGCGCCGCGACAAGAAGGAGCG
CCAGCAGAAGGAGAAAGGCTATCATCGTGACAGGGATAATTTGTCTGGCG
GCGGCAGCAGCGACGGCGGGAGCGGCAAGCGCCGCCGCCATCACCGTCAC
GGGGACCGCAGGGAGAGCGGCCATCGCTTCCGGAGGAGCCGATCGCAGCA
GTAGATAGGAAGCGATATAAACGTTCAATCGAAACTGGGTTCAGCGGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20:4596..8294-

>mRNA_P-wetherbeei_contig20.1.1 ID=mRNA_P-wetherbeei_contig20.1.1|Name=mRNA_P-wetherbeei_contig20.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=3276bp|location=Sequence derived from alignment at P-wetherbeei_contig20:4596..8294- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGGGCACCCTGGTGTCGCCGCCGGACCGGTAGCGTATCCCACGCC
TCCGCTTCCAGGCCCGCACCATCCACTGCTACTGCCGGGCCCGCCCCTCC
CGGGCATGGACCCAGCGATGGCGTCGCCGCCGCCGGGGGCGGCGAACGCG
GCGCCGAAAACCAAGGTTCCGGAGTGGCTCTTGGCCCAGATCAAGGAGAA
TGCGGCGACAGCGGAGCGCGAGGCACAAAACAAGGCGAAGAAAGAGGCGT
ACCGCCTGGCGGCAGAGGCCACGGCATTCAGCGGCCGCAGCGACGGCGGC
GGCGGCGGCGGCCCCGGCGCCCGCGCCGGCAGCAACAGCAGCATCGGCTC
CTACGACGGATACCACCATGCCACCGCCCGATCGCGCTCCCCATCACCGG
ATCCATCGTCGACACACGACGCGGCGGCCATTGCTGGCGGCGGCAGTCTC
GGCGGAAATGGGGTTGGCGCAAAGCCGGCGGCGTCATCGACGCCGCTGTT
CTTCCCGGCGGACGCAGCGGCTGCCCTGGCGTCGGTGATGGCGGAGCCCG
CCCGTGCGCCGAAGGGCGGGGGCTTCTCGTTCGCCGCCAGCACGACAACG
GTAGTGCGCAGCGCTAAGAAGCTGCCTCTGAGCCCGCCGCGACAGGCCGG
GCGCAGCAAGTTTGACACGGACAGCAGCGATAACGATGAGGAGGATGCCG
GCAGCGGCGGCGGCAGCGGCGGCGGTAGAAGGAAGAGAACGGACGATGAC
TCCTCTTCTGCTGCTGCTGCCGCTGCTGCCGTAGAGCCAGAAGCGACGGC
GGCGACATCGGCGGTGGCAGTGGTTCCAGCCGGTGAAGGCTCGGCGCCGG
CTGGCGGCAGCGGTTGTCTAGCTGCCGCGGGGGTCTCGCTGGAAGCGGCG
ACGGACCCGGATCCCGAACTGAGGGCGGCGCTGGACGCGGAGGTGGCGCA
GCTGTTCCCGGCGCTCCTCGGCAAGCTGCGTGCGCGAGTCATTTCCGAGG
TTGCCCGCAGGGTCGTGGCTAACGCCGCCGTCAAGGGCACTGAGGGCGGC
GGCGGCGGCGCGGCGGCTGCGAACGGCGCCAGCGGCGTGGCGGCTGCGAA
CGGCGGCGTCGCCGTGGTGTCGGGTTCTGCCGCCGCCGCCACCGCCGTCA
TTGCGGCTGCGGCAAAGGCCGTGGTGTCGGTCATGGCAGCCCAGGGAGCG
CTGGGCGCCGTCGCGGGCTACGGCTCGTCGTCCGACGAATCTGACGCCGA
AACAGAGGTAAAAACTGCCAAGGGGAATGCGGCGACCGCACCGGCGGCAC
CACCGGCGGCGGCGCCCCGACGTGTGGCGTTCGCTACCGTCAAGATCGGG
CAGTGCACGCTTCCGGAATGGGCGGAGCAGCGTGGCGAAGGGTACCTGCC
GCGACAGCGGCGCTTTTCGCTGGAGTACCAGTGGGTCGGCTCCCGCGGCG
CGCTGCCGCCACCGTTGTCTGTCGAACGGCCGACGACAGTCCTCGGACGT
ATGGCGGGATCAGCAGCCGGCGCCGACGCTGTCGTCCGCCATGAGACTGT
ATCGCGGCAGCACGCCGTGCTCCTGGTGGACGCGGACGGGACGCCGCACC
TCATGGACCTCGGTTCGAGCAACGGCACGTTTGTCAGCGACGGCGGCGAT
GGTGACGGCGGCGGTGGCGGCAGCGGCGACGACGGCGGCGGCGGTGGCAG
CGGCTCTTCAGGCCATGGGCGGCTGTCAGCGAAGCGGCTGGCGGCCGGCG
TCCTTTATCAGCTGCGCCACGGCGACGTTTTTGGTCTCGGCGATGCCCGT
CTCAAGCTAGTGGCGGCCTGGGCTGAGGGCGAGGCCGCGGCCGATGGAGG
CACCGCCGCCGCTGTGGCTCCTTCGTCGCCGGCGCCAGTGCCACTGCCAG
AAGGTGCGATAAAGGCATCCGTCAGCTCGACGCAGGCGCCGTCAGCTTCG
CCGGCGCCTGCCGTTGCTACGGAGCCTACGTCGAATGACGATGGCGCCGG
ATCTGTAAGGGCGGCGCCGAAGGTGTCTGGTGGAGCTATCGTGGCACCAG
TCACAATATCGGCGGAGGCAGAGGCGGCGGCGCCAATAGTGTCGGCAGCA
GCGGTGGCAGCGGCAATTGATGTTGCGGAATCAGGCGCGGAAGCTGCAGC
GAAGCTTGAGGCAGAGCCTGCAGTAGAGCCTGAGTTAGAGCCGTCCACTG
CCACCAAGCCGGAGGAAAAGACTGCTGCTGCCGCCGCTGCGGCAAACCAG
ACGCCTGACCCGGCCCGTTTGGCGGCCAGAATGGCAGGCGCTACGGCCGG
AGTGGCAGGCGCTACGGCCGTCGCCAAAGGCTTGACCGCATTTAACGGGG
GAAATGGCGCCACTGAACCCGCATCGGCCACTTTGGCAGGACGCGAGCGA
GCGTCGGCCGCGCCGGCTGCCGCCGTCAATGCAGCAGAGGCTACGTCGCC
GCCGAAGCTCGTGCCGCCACCAGCTGCGGACTCTCTGACGCGGGATGCGG
CCGCGGAGCTTGCACGACGGCTATGCACGGGACATAGCGATGGGCAAGAC
GCCGAAGCGGTCCCTGCTGCAGGTAGTGGCAGCAACTGCGGCGACAGCGG
CAGTGGCGGCAGTGGCAGCAGTTGCGGCGGCGGCGGCGTTGGCAGTAGCA
ACAGTGGCGCCGTCGCCGCTGCCACCGCGACAGTCCTCAATGCTATGGCC
GATGGCGGCGAAGCGGCGACGGTTGCCACGGGCGAAATGGGAAGCACGGA
TGGCTCGCGTCCGGAAAAGGAGGAGCGCGGCGGCGGCGGCGACAGAAGCA
GCAAGGAGACGGAGCGAAGGAGAAGCGGCGAGGGTACCGAGGGGGAGAGG
AAGGAGAAGCGGCGCAGCCGCAGCGACAGCCGCGGCCGCGACAGAAGCAG
AGAGAAAAAGCGCCGCCGCCGCAGCCGCAGCAACTCTCGCGACCGCAGCG
GTAGCAGGCACCGCGAGAAATCAGAGCATGGCAAGCGTGGCAGGAGCCGG
AGCAGCAGCAGGGATATGAGCAGCGAGCGCGGGCACCGTCGCGACCACAA
TGGCAAAGCGGATCGGCACCGGCGCCGGCACCGCGACGGCAAGGAGGACC
AGCGCCGCGACAAGAAGGAGCGCCAGCAGAAGGAGAAAGGCTATCATCGT
GACAGGGATAATTTGTCTGGCGGCGGCAGCAGCGACGGCGGGAGCGGCAA
GCGCCGCCGCCATCACCGTCACGGGGACCGCAGGGAGAGCGGCCATCGCT
TCCGGAGGAGCCGATCGCAGCAGTAG
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