mRNA_P-wetherbeei_contig19984.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19984.1.1
Unique NamemRNA_P-wetherbeei_contig19984.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19984.1.1 vs. uniprot
Match: A0A537TN09_9PROT (Ldh family oxidoreductase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537TN09_9PROT)

HSP 1 Score: 159 bits (402), Expect = 1.460e-47
Identity = 81/134 (60.45%), Postives = 102/134 (76.12%), Query Frame = 1
Query:    1 LGLSLPAGVALDAGGNPTTDPDAAKRGALLPFGGHKGFALGLAMQALGVLAGSGMNAAKDYGYLIIAMRPDLLLPLDDFKRELAIMLSRIKSVSRQPGVPEIRLPSEHSYRSRERALREGIVIDRIVHDRLVAM 402
            LG  LP GVAL  GG PT DP AA+RGALLPFGG+KGF L L MQALG+LAGSG +A  +YGYL +A RPDL+   D F+R++  ++ RIK+  R+PGV +IR+PSE ++ SRERAL EG+ IDR+V D LVA+
Sbjct:    8 LGELLPEGVALGPGGEPTRDPTAARRGALLPFGGYKGFGLALMMQALGLLAGSGSDAESEYGYLFVAFRPDLIASADAFERQVTQLIERIKATPRRPGVDDIRIPSERAFHSRERALHEGLEIDRVVFDALVAL 141          
BLAST of mRNA_P-wetherbeei_contig19984.1.1 vs. uniprot
Match: A0A7X1P0E2_9PROT (Ldh family oxidoreductase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1P0E2_9PROT)

HSP 1 Score: 160 bits (406), Expect = 7.560e-46
Identity = 85/139 (61.15%), Postives = 106/139 (76.26%), Query Frame = 1
Query:    4 GLSLPAGVALDAGGNPTTDPDAAKRGALLPFGGHKGFALGLAMQALGVLAGSGMNAAKDYGYLIIAMRPDLLLPLDDFKRELAIMLSRIKSVSRQPGVPEIRLPSEHSYRSRERALREGIVIDRIVHDRLVAMAREQQP 420
            G  LP GVA+DA G PT DP  AK  ALLPFGG+KGFAL L MQALGVLAGSG    K YGY ++A++PDLLLPLDDF+R+++ ML+R+K+  RQPGV EIRLP E + R R +ALREGI IDR ++D L+A+ + + P
Sbjct:  197 GAVLPEGVAIDAHGQPTRDP--AKVHALLPFGGYKGFALALTMQALGVLAGSGYGDDKTYGYFVMAIKPDLLLPLDDFRRDMSAMLARVKATPRQPGVDEIRLPGERALRERAKALREGIEIDRQIYDALLALPQGELP 333          
BLAST of mRNA_P-wetherbeei_contig19984.1.1 vs. uniprot
Match: A0A537RGW3_9PROT (Ldh family oxidoreductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537RGW3_9PROT)

HSP 1 Score: 157 bits (396), Expect = 1.350e-44
Identity = 83/140 (59.29%), Postives = 101/140 (72.14%), Query Frame = 1
Query:    1 LGLSLPAGVALDAGGNPTTDPDAAKRGALLPFGGHKGFALGLAMQALGVLAGSGMNAAKDYGYLIIAMRPDLLLPLDDFKRELAIMLSRIKSVSRQPGVPEIRLPSEHSYRSRERALREGIVIDRIVHDRLVAMAREQQP 420
            LG  LP GVAL   G PT D   A+RGALLPFGG+KGF L L MQALG+LAG G N  +DYGYL IA +PDLL P D F+RE+  +L R+K+  RQ GV EIR+PSE ++RSRERALREG+ +DR+V+D L A+     P
Sbjct:  155 LGELLPEGVALGPDGEPTRDATLARRGALLPFGGYKGFGLALMMQALGLLAGFGPNGERDYGYLFIAFKPDLLGPADVFEREVTHLLERVKATPRQSGVNEIRIPSERAFRSRERALREGLEVDRLVYDALEALRAPSAP 294          
BLAST of mRNA_P-wetherbeei_contig19984.1.1 vs. uniprot
Match: A0A537THS9_9PROT (Ldh family oxidoreductase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537THS9_9PROT)

HSP 1 Score: 154 bits (390), Expect = 2.480e-44
Identity = 79/134 (58.96%), Postives = 100/134 (74.63%), Query Frame = 1
Query:    1 LGLSLPAGVALDAGGNPTTDPDAAKRGALLPFGGHKGFALGLAMQALGVLAGSGMNAAKDYGYLIIAMRPDLLLPLDDFKRELAIMLSRIKSVSRQPGVPEIRLPSEHSYRSRERALREGIVIDRIVHDRLVAM 402
            LG  LP GVAL  GG PT DP AA+RGALLPFGG+KGF L L MQALG+LA S  +A  +YGYL +A RPDL+   D F+R++  ++ RIK+  R+PGV +IR+PSE ++ SRERAL EG+ IDR+V D LVA+
Sbjct:  118 LGELLPEGVALGPGGEPTRDPTAARRGALLPFGGYKGFGLALMMQALGLLASSSSDAESEYGYLFVAFRPDLIASADAFERQVTQLIERIKATPRRPGVDDIRIPSERAFHSRERALHEGLEIDRVVFDALVAL 251          
BLAST of mRNA_P-wetherbeei_contig19984.1.1 vs. uniprot
Match: A0A1H0WAA6_9BURK (Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family n=1 Tax=Acidovorax cattleyae TaxID=80868 RepID=A0A1H0WAA6_9BURK)

HSP 1 Score: 157 bits (396), Expect = 4.140e-44
Identity = 82/134 (61.19%), Postives = 99/134 (73.88%), Query Frame = 1
Query:    4 GLSLPAGVALDAGGNPTTDPDAAKRGALLPFGGHKGFALGLAMQALGVLAGSGMNAAKDYGYLIIAMRPDLLLPLDDFKRELAIMLSRIKSVSRQPGVPEIRLPSEHSYRSRERALREGIVIDRIVHDRLVAMA 405
            G  LPAGVA+D+ G PTTDP  A+ GALLPFGGHKGFAL LA+QALGV AGSG NA KDYGYL++AM+PDLLLPL+ F+ +L   + RI++  RQPGV  IR+PSE +   R R    GI +DR V D L A+A
Sbjct:  203 GEPLPAGVAIDSEGRPTTDPHVARAGALLPFGGHKGFALALAVQALGVFAGSGFNADKDYGYLLLAMKPDLLLPLETFRNQLREEIERIRATPRQPGVDAIRIPSERAVELRRRHQASGIALDRTVFDALRALA 336          
BLAST of mRNA_P-wetherbeei_contig19984.1.1 vs. uniprot
Match: A0A7V8SZG9_9BACT (Ldh family oxidoreductase n=3 Tax=Bacteria TaxID=2 RepID=A0A7V8SZG9_9BACT)

HSP 1 Score: 154 bits (388), Expect = 3.540e-43
Identity = 79/138 (57.25%), Postives = 101/138 (73.19%), Query Frame = 1
Query:    1 LGLSLPAGVALDAGGNPTTDPDAAKRGALLPFGGHKGFALGLAMQALGVLAGSGMNAAKDYGYLIIAMRPDLLLPLDDFKRELAIMLSRIKSVSRQPGVPEIRLPSEHSYRSRERALREGIVIDRIVHDRLVAMAREQ 414
            LG  LP GVAL  GG PT DP AA+RGALLPFGG+KGF L L MQALG+LAGSG +A  +YG+L +A RPDL+   D F++ +  ++ RIK+  R+PGV +IR+P E ++ SRERAL EG+ IDR+V D LVA+   Q
Sbjct:  193 LGELLPEGVALGPGGEPTRDPTAARRGALLPFGGYKGFGLALMMQALGLLAGSGSDAESEYGFLFVAFRPDLIGSADTFEQRVTELIERIKATPRRPGVDDIRIPCERAFHSRERALHEGLEIDRVVFDALVALRARQ 330          
BLAST of mRNA_P-wetherbeei_contig19984.1.1 vs. uniprot
Match: A0A2V6QPV3_9BACT (Lactate dehydrogenase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6QPV3_9BACT)

HSP 1 Score: 151 bits (381), Expect = 2.270e-42
Identity = 81/135 (60.00%), Postives = 97/135 (71.85%), Query Frame = 1
Query:    1 LGLSLPAGVALDAGGNPTTDPDAAKRGALLPFGGHKGFALGLAMQALGVLAGSGMNAAKDYGYLIIAMRPDLLLPLDDFKRELAIMLSRIKSVSRQPGVPEIRLPSEHSYRSRERALREGIVIDRIVHDRLVAMA 405
            LG+ LP GVALDA G PTTD  AA+RGA+LPFGGHKG+AL LA  ALGVL G     A   GY+ IA +PDL +PLDD++R LA  + RIK++ RQ GV EIR+P E +YR R R  REGI IDR +HD LV +A
Sbjct:  173 LGMPLPEGVALDANGRPTTDARAARRGAILPFGGHKGYALALATHALGVLCGDQQEHA---GYIFIAFKPDLFMPLDDYRRALAGEIRRIKAIPRQDGVDEIRIPGERAYRERARLTREGIEIDRRIHDALVRLA 304          
BLAST of mRNA_P-wetherbeei_contig19984.1.1 vs. uniprot
Match: A0A208YAD5_9BURK (Uncharacterized protein n=2 Tax=Pigmentiphaga TaxID=152267 RepID=A0A208YAD5_9BURK)

HSP 1 Score: 150 bits (380), Expect = 7.800e-42
Identity = 83/135 (61.48%), Postives = 101/135 (74.81%), Query Frame = 1
Query:    4 GLSLPAGVALDAGGNPTTDPDAAKRGALLPFGGHKGFALGLAMQALGVLAGSGMNAAKDYGYLIIAMRPDLLLPLDDFKRELAIMLSRIKSVSRQPGVPEIRLPSEHSYRSRERALREGIVIDRIVHDRLVAMAR 408
            G +LP GVA+DA G PT DP  A  GA+LPFGGHKGFALGLAMQALG+LAGSG +  +  GYLIIA+RPDL++PL++++R L+  L+RIK+   QPGV  IRLPSE S + RER  R GIVIDR V   L  +AR
Sbjct:  202 GETLPEGVAIDANGEPTQDPILASMGAVLPFGGHKGFALGLAMQALGILAGSGDDNEERAGYLIIAIRPDLMVPLNEYRRTLSETLARIKATPLQPGVESIRLPSERSQQERERNQRTGIVIDRQVQVALQRLAR 336          
BLAST of mRNA_P-wetherbeei_contig19984.1.1 vs. uniprot
Match: A0A2V6YUN8_9BACT (Lactate dehydrogenase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6YUN8_9BACT)

HSP 1 Score: 150 bits (378), Expect = 1.210e-41
Identity = 78/141 (55.32%), Postives = 101/141 (71.63%), Query Frame = 1
Query:    1 LGLSLPAGVALDAGGNPTTDPDAAKRGALLPFGGHKGFALGLAMQALGVLAGSGMNAAKDYGYLIIAMRPDLLLPLDDFKRELAIMLSRIKSVSRQPGVPEIRLPSEHSYRSRERALREGIVIDRIVHDRLVAMAREQQPN 423
            LG+ LP  VA+D  G PTTD  AA+RGALLPFGGHKG+AL LAM ALGVL   G+   +  GYL IA +PDL +PL D++R LA  ++ IK++ RQ GV EIR+P E +YR R R  REGIV+DR +HD L+A+A  ++ +
Sbjct:  196 LGIPLPEDVAIDERGRPTTDAAAARRGALLPFGGHKGYALALAMHALGVLC-RGVATEESTGYLFIAFKPDLFVPLQDYRRALAAEIAAIKAIPRQEGVAEIRIPGERAYRERARLAREGIVVDRRIHDALIALAARKRQD 335          
BLAST of mRNA_P-wetherbeei_contig19984.1.1 vs. uniprot
Match: A0A2V6XS20_9BACT (Lactate dehydrogenase n=2 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6XS20_9BACT)

HSP 1 Score: 148 bits (374), Expect = 1.140e-40
Identity = 77/135 (57.04%), Postives = 98/135 (72.59%), Query Frame = 1
Query:    1 LGLSLPAGVALDAGGNPTTDPDAAKRGALLPFGGHKGFALGLAMQALGVLAGSGMNAAKDYGYLIIAMRPDLLLPLDDFKRELAIMLSRIKSVSRQPGVPEIRLPSEHSYRSRERALREGIVIDRIVHDRLVAMA 405
            LG+ LP GVA+D  G PTTD  AA+RGALLPFGGHKG+AL LAM ALGVL  SG    +  GYL IA +PDL +PL+D++R LA  ++ IK+  RQ GV EIR+P E +YR R R  R+G+ ID+ +HD L+A+A
Sbjct:  228 LGIPLPEGVAIDEDGRPTTDATAARRGALLPFGGHKGYALALAMHALGVLC-SGTTDTESAGYLFIAFKPDLFMPLEDYRRALAAEIALIKATPRQDGVDEIRIPGERAYRDRARLTRDGLEIDQRIHDALIALA 361          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19984.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537TN09_9PROT1.460e-4760.45Ldh family oxidoreductase (Fragment) n=1 Tax=Alpha... [more]
A0A7X1P0E2_9PROT7.560e-4661.15Ldh family oxidoreductase n=1 Tax=Betaproteobacter... [more]
A0A537RGW3_9PROT1.350e-4459.29Ldh family oxidoreductase n=1 Tax=Alphaproteobacte... [more]
A0A537THS9_9PROT2.480e-4458.96Ldh family oxidoreductase (Fragment) n=1 Tax=Alpha... [more]
A0A1H0WAA6_9BURK4.140e-4461.19Malate/lactate/ureidoglycolate dehydrogenase, LDH2... [more]
A0A7V8SZG9_9BACT3.540e-4357.25Ldh family oxidoreductase n=3 Tax=Bacteria TaxID=2... [more]
A0A2V6QPV3_9BACT2.270e-4260.00Lactate dehydrogenase n=1 Tax=Candidatus Rokubacte... [more]
A0A208YAD5_9BURK7.800e-4261.48Uncharacterized protein n=2 Tax=Pigmentiphaga TaxI... [more]
A0A2V6YUN8_9BACT1.210e-4155.32Lactate dehydrogenase n=1 Tax=Candidatus Rokubacte... [more]
A0A2V6XS20_9BACT1.140e-4057.04Lactate dehydrogenase n=2 Tax=Candidatus Rokubacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19984contigP-wetherbeei_contig19984:9..434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1380394.JADL01000008_gene3507
PFAMsLdh_2
Model size426
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.52e-43
EggNOG OGsCOG2055@1|root,COG2055@2|Bacteria,1RM72@1224|Proteobacteria,2UAHX@28211|Alphaproteobacteria,2JWJM@204441|Rhodospirillales
DescriptionMalate/L-lactate dehydrogenase
Cds size426
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186186.746236-CDS-P-wetherbeei_contig19984:8..4341683186186.746236-CDS-P-wetherbeei_contig19984:8..434Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19984 9..434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19984.1.1prot_P-wetherbeei_contig19984.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19984 9..434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19984.1.1

>prot_P-wetherbeei_contig19984.1.1 ID=prot_P-wetherbeei_contig19984.1.1|Name=mRNA_P-wetherbeei_contig19984.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
LGLSLPAGVALDAGGNPTTDPDAAKRGALLPFGGHKGFALGLAMQALGVL
AGSGMNAAKDYGYLIIAMRPDLLLPLDDFKRELAIMLSRIKSVSRQPGVP
EIRLPSEHSYRSRERALREGIVIDRIVHDRLVAMAREQQPN*
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mRNA from alignment at P-wetherbeei_contig19984:9..434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19984.1.1 ID=mRNA_P-wetherbeei_contig19984.1.1|Name=mRNA_P-wetherbeei_contig19984.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig19984:9..434+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGGGCTGTCGCTACCGGCGGGCGTTGCGCTTGATGCCGGAGGCAATCC GACCACCGATCCCGACGCGGCCAAGCGCGGCGCGTTGCTCCCCTTCGGCG GGCACAAGGGGTTTGCCCTCGGGCTTGCCATGCAGGCGCTGGGTGTGCTG GCGGGCTCGGGCATGAATGCCGCGAAGGATTACGGATACCTCATCATCGC GATGCGGCCCGACCTGTTGTTGCCGCTTGACGACTTCAAGCGCGAGCTGG CGATCATGCTTTCGCGCATCAAGTCCGTGTCGCGCCAGCCCGGTGTGCCT GAAATTCGCCTGCCGTCGGAGCATTCATATCGCTCGCGCGAGCGTGCACT TCGCGAAGGCATAGTCATCGACCGTATCGTGCACGATCGCCTCGTGGCCA TGGCCCGGGAACAACAGCCGAATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19984:9..434+

>mRNA_P-wetherbeei_contig19984.1.1 ID=mRNA_P-wetherbeei_contig19984.1.1|Name=mRNA_P-wetherbeei_contig19984.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig19984:9..434+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGGGCTGTCGCTACCGGCGGGCGTTGCGCTTGATGCCGGAGGCAATCC
GACCACCGATCCCGACGCGGCCAAGCGCGGCGCGTTGCTCCCCTTCGGCG
GGCACAAGGGGTTTGCCCTCGGGCTTGCCATGCAGGCGCTGGGTGTGCTG
GCGGGCTCGGGCATGAATGCCGCGAAGGATTACGGATACCTCATCATCGC
GATGCGGCCCGACCTGTTGTTGCCGCTTGACGACTTCAAGCGCGAGCTGG
CGATCATGCTTTCGCGCATCAAGTCCGTGTCGCGCCAGCCCGGTGTGCCT
GAAATTCGCCTGCCGTCGGAGCATTCATATCGCTCGCGCGAGCGTGCACT
TCGCGAAGGCATAGTCATCGACCGTATCGTGCACGATCGCCTCGTGGCCA
TGGCCCGGGAACAACAGCCGAATTGA
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