mRNA_P-wetherbeei_contig19975.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19975.2.1
Unique NamemRNA_P-wetherbeei_contig19975.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19975.2.1 vs. uniprot
Match: A0A523ECG3_9BACT (Histidine kinase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A523ECG3_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 1.250e-6
Identity = 32/108 (29.63%), Postives = 55/108 (50.93%), Query Frame = 1
Query:   13 LDKEAILARLGGSQQLFENICASFMKLLPGQLAVIGDAVSNRDAETLSRAVHRLKGSVAYFDSGSVSTTISELEALTKRPEFDETRARFLFERMAGQMQELIEDLQAL 336
            L+ + +L R+ G Q+L   +   F K  PG LA I D  + +DA+ +SRA HR++G++      + +   + L+      E D  +A    E +  +M+ L  +L AL
Sbjct:  792 LESQCLLDRVNGDQELLAEVIGVFFKEAPGVLADINDGFARQDAQRVSRAAHRIEGTLGTVGGIASAQAANRLQTWASEGELD--KAGRALEELEREMERLTPELTAL 897          
BLAST of mRNA_P-wetherbeei_contig19975.2.1 vs. uniprot
Match: A0A532DFW5_9BACT (Response regulator n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A532DFW5_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 3.980e-6
Identity = 30/78 (38.46%), Postives = 44/78 (56.41%), Query Frame = 1
Query:    7 NSLDKEAILARLGGSQQLFENICASFMKLLPGQLAVIGDAVSNRDAETLSRAVHRLKGSVAYFDSGSVSTTISELEAL 240
            ++LD +A LARL G  +LF+ I    +   PG L  I  AV   DA+ L+ A H+LKG+V+ F   + +     LEA+
Sbjct:  325 DALDVDAALARLEGDLELFQTIAQQCLTDAPGLLDAIRHAVEQSDAQGLTTAAHKLKGTVSEFAVKAAAEAAQRLEAM 402          
BLAST of mRNA_P-wetherbeei_contig19975.2.1 vs. uniprot
Match: E6QMD6_9ZZZZ (Sensor protein (Modular protein) n=1 Tax=mine drainage metagenome TaxID=410659 RepID=E6QMD6_9ZZZZ)

HSP 1 Score: 53.9 bits (128), Expect = 5.900e-6
Identity = 26/71 (36.62%), Postives = 41/71 (57.75%), Query Frame = 1
Query:   28 ILARLGGSQQLFENICASFMKLLPGQLAVIGDAVSNRDAETLSRAVHRLKGSVAYFDSGSVSTTISELEAL 240
            +L R+GG ++L   + A F    PGQ+  + +A+ NRDA TL R  H LKG++    +   S   +ELE++
Sbjct:  827 LLERIGGDRELLSELLALFRGDYPGQIQALREALKNRDAATLQRVGHALKGTLGNLSAPVASQIAAELESI 897          
BLAST of mRNA_P-wetherbeei_contig19975.2.1 vs. uniprot
Match: UPI00142486BC (response regulator n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI00142486BC)

HSP 1 Score: 52.4 bits (124), Expect = 2.040e-5
Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = 1
Query:   13 LDKEAILARLGGSQQLFENICASFMKLLPGQLAVIGDAVSNRDAETLSRAVHRLKGSVAYFDSGSVSTTISELEA 237
            LD ++ L RLGG + L E++   F++ +P  L  +      RDAETL R  H LKG ++ FDS   S T+S+L A
Sbjct:  811 LDLDSALTRLGGDKSLLEDMLEFFIEDIPPLLQDMRRDALKRDAETLERNAHSLKGLLSNFDS---SQTVSDLAA 882          
BLAST of mRNA_P-wetherbeei_contig19975.2.1 vs. uniprot
Match: A0A2V8FZY8_9BACT (Histidine kinase (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8FZY8_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 3.770e-5
Identity = 25/76 (32.89%), Postives = 40/76 (52.63%), Query Frame = 1
Query:   13 LDKEAILARLGGSQQLFENICASFMKLLPGQLAVIGDAVSNRDAETLSRAVHRLKGSVAYFDSGSVSTTISELEAL 240
            +D++ ++ARLGG ++LF ++   F+   P QLA I  AV  R+A  L  A H  KG+     +  +      LE +
Sbjct:  746 VDRDGLMARLGGDEELFADVVRLFLDDCPAQLAAIKAAVDERNATRLRTAAHAFKGAAGNLSAAGLFEATQTLERM 821          
BLAST of mRNA_P-wetherbeei_contig19975.2.1 vs. uniprot
Match: A0A8E6EW80_9BACT (PAS domain S-box protein n=1 Tax=Telmatocola sphagniphila TaxID=1123043 RepID=A0A8E6EW80_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 5.170e-5
Identity = 29/83 (34.94%), Postives = 44/83 (53.01%), Query Frame = 1
Query:   16 DKEAILARLGGSQQLFENICASFMKLLPGQLAVIGDAVSNRDAETLSRAVHRLKGSVAYFDSGSVSTTISELEALTKRPEFDE 264
            D   +L R+ G ++L E +  SF+K     L  +  A   RDA++L R  H+LKGS+A F +G  +   S LE + +   F E
Sbjct:  791 DPVRLLERVEGDRELLEKMVLSFIKQSGKLLPELEKACLVRDADSLERKAHKLKGSMAGFSAGLATELASRLEIMGRNANFSE 873          
BLAST of mRNA_P-wetherbeei_contig19975.2.1 vs. uniprot
Match: A0A2V9VMI8_9BACT (Hybrid sensor histidine kinase/response regulator n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9VMI8_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 6.810e-5
Identity = 24/86 (27.91%), Postives = 42/86 (48.84%), Query Frame = 1
Query:   22 EAILARLGGSQQLFENICASFMKLLPGQLAVIGDAVSNRDAETLSRAVHRLKGSVAYFDSGSVSTTISELEALTKRPEFDETRARF 279
            E +L  LGG + L   +   F++  P  LA +  A+  +DA T+ R  H +KG + Y     VS    +LE + ++ + +  +  F
Sbjct:  490 EQVLESLGGDENLMREVLGIFLEQTPKHLASLRQALVTKDATTIERTAHSMKGELGYLGIAEVSQKARQLEEMGRKGDVEGAQRAF 575          
BLAST of mRNA_P-wetherbeei_contig19975.2.1 vs. uniprot
Match: A0A7Y7N7J8_DESBX (Histidine kinase n=1 Tax=Desulfuromonadales bacterium TaxID=2099678 RepID=A0A7Y7N7J8_DESBX)

HSP 1 Score: 50.4 bits (119), Expect = 9.680e-5
Identity = 30/99 (30.30%), Postives = 48/99 (48.48%), Query Frame = 1
Query:   16 DKEAILARLGGSQQLFENICASFMKLLPGQLAVIGDAVSNRDAETLSRAVHRLKGSVAYFDSGSVSTTISELEALTKRPEFDETRARFLFERMAGQMQE 312
            D+E +L RLGG   L   +   F K + G L  +  AV + D + +   VH +KG+ A   +  +  T S LE + +  + D  R   L ER+  + +E
Sbjct:  893 DREELLVRLGGKDDLVPRLLTMFDKNVAGYLKALRQAVDSGDDDQVRIQVHTIKGAAANISAHKIKVTASTLEMMAREGQRDGWRV--LLERLESEFRE 989          
BLAST of mRNA_P-wetherbeei_contig19975.2.1 vs. uniprot
Match: A0A7V6A5J7_9DELT (Hpt domain-containing protein n=1 Tax=Desulfobacca acetoxidans TaxID=60893 RepID=A0A7V6A5J7_9DELT)

HSP 1 Score: 48.1 bits (113), Expect = 9.880e-5
Identity = 32/110 (29.09%), Postives = 54/110 (49.09%), Query Frame = 1
Query:    1 MKNSLDKEAILARLGGSQQLFENICASFMKLLPGQLAVIGDAVSNRDAETLSRAVHRLKGSVAYFDSGSVSTTISELEALTKRPEFDETRARFLFERMA---GQMQELIE 321
            M    D++A+L R+ G+++L E +   F+   P QL  +  A+   DA  L    H LKG+ A   + +V     +LE   K  + +E  A+ L E +     + QE++E
Sbjct:    1 MTEIFDRQALLERVEGNEELLEELVHIFLDYTPRQLQKLRQALEVGDASGLQGQAHSLKGAAASISAEAVRQVAGQLEISGKNRDLEE--AQLLLEALIQEFARFQEVLE 108          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19975.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A523ECG3_9BACT1.250e-629.63Histidine kinase n=1 Tax=Acidobacteria bacterium T... [more]
A0A532DFW5_9BACT3.980e-638.46Response regulator n=1 Tax=Nitrospira sp. TaxID=70... [more]
E6QMD6_9ZZZZ5.900e-636.62Sensor protein (Modular protein) n=1 Tax=mine drai... [more]
UPI00142486BC2.040e-541.33response regulator n=1 Tax=Rubinisphaera sp. JC658... [more]
A0A2V8FZY8_9BACT3.770e-532.89Histidine kinase (Fragment) n=1 Tax=Acidobacteria ... [more]
A0A8E6EW80_9BACT5.170e-534.94PAS domain S-box protein n=1 Tax=Telmatocola sphag... [more]
A0A2V9VMI8_9BACT6.810e-527.91Hybrid sensor histidine kinase/response regulator ... [more]
A0A7Y7N7J8_DESBX9.680e-530.30Histidine kinase n=1 Tax=Desulfuromonadales bacter... [more]
A0A7V6A5J7_9DELT9.880e-529.09Hpt domain-containing protein n=1 Tax=Desulfobacca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19975contigP-wetherbeei_contig19975:421..771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1210884.HG799462_gene8038
PFAMsHATPase_c,HisKA,Hpt,PAS_3,PAS_4,PAS_9,Response_reg
Model size351
Max annot lvl203682|Planctomycetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.1e-07
EggNOG OGsCOG0642@1|root,COG5002@1|root,COG2205@2|Bacteria,COG5002@2|Bacteria,2IX1S@203682|Planctomycetes
DescriptionHistidine kinase
Cds size351
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186186.5289044-CDS-P-wetherbeei_contig19975:420..7711683186186.5289044-CDS-P-wetherbeei_contig19975:420..771Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19975 421..771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19975.2.1prot_P-wetherbeei_contig19975.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19975 421..771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19975.2.1

>prot_P-wetherbeei_contig19975.2.1 ID=prot_P-wetherbeei_contig19975.2.1|Name=mRNA_P-wetherbeei_contig19975.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=117bp
MKNSLDKEAILARLGGSQQLFENICASFMKLLPGQLAVIGDAVSNRDAET
LSRAVHRLKGSVAYFDSGSVSTTISELEALTKRPEFDETRARFLFERMAG
QMQELIEDLQALRAPN*
back to top

mRNA from alignment at P-wetherbeei_contig19975:421..771-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19975.2.1 ID=mRNA_P-wetherbeei_contig19975.2.1|Name=mRNA_P-wetherbeei_contig19975.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig19975:421..771- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAAATTCCTTGGACAAAGAGGCCATTCTGGCCCGGTTGGGCGGAAG CCAGCAACTATTTGAGAATATTTGCGCCAGCTTTATGAAGCTTTTGCCCG GGCAGCTCGCGGTGATAGGCGACGCCGTCTCCAATCGCGATGCAGAAACG TTGAGCCGAGCTGTGCACCGCCTCAAGGGTTCGGTGGCCTACTTCGACAG CGGCAGCGTCAGTACCACGATTTCCGAGCTTGAGGCCCTCACCAAGCGCC CCGAATTTGACGAAACGCGCGCGCGCTTCTTATTCGAGCGCATGGCCGGG CAGATGCAAGAACTGATTGAGGATCTGCAAGCTCTGCGAGCCCCCAACTA G
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig19975:421..771-

>mRNA_P-wetherbeei_contig19975.2.1 ID=mRNA_P-wetherbeei_contig19975.2.1|Name=mRNA_P-wetherbeei_contig19975.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig19975:421..771- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAAATTCCTTGGACAAAGAGGCCATTCTGGCCCGGTTGGGCGGAAG
CCAGCAACTATTTGAGAATATTTGCGCCAGCTTTATGAAGCTTTTGCCCG
GGCAGCTCGCGGTGATAGGCGACGCCGTCTCCAATCGCGATGCAGAAACG
TTGAGCCGAGCTGTGCACCGCCTCAAGGGTTCGGTGGCCTACTTCGACAG
CGGCAGCGTCAGTACCACGATTTCCGAGCTTGAGGCCCTCACCAAGCGCC
CCGAATTTGACGAAACGCGCGCGCGCTTCTTATTCGAGCGCATGGCCGGG
CAGATGCAAGAACTGATTGAGGATCTGCAAGCTCTGCGAGCCCCCAACTA
G
back to top