mRNA_P-wetherbeei_contig19975.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19975.1.1
Unique NamemRNA_P-wetherbeei_contig19975.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19975.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19975contigP-wetherbeei_contig19975:5..361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog388467.A19Y_0074
PFAMsGAF_2,HATPase_c,HisKA,PAS,PAS_8,PAS_9,Response_reg
Model size357
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categorymitochondrion
Exons1
Evalue2e-11
EggNOG OGsCOG0642@1|root,COG2199@1|root,COG3290@1|root,COG5000@1|root,COG2205@2|Bacteria,COG3290@2|Bacteria,COG3706@2|Bacteria,COG5000@2|Bacteria,1G13T@1117|Cyanobacteria,1H77Q@1150|Oscillatoriales
DescriptionHistidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Cds size357
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186186.4983516-CDS-P-wetherbeei_contig19975:4..3611683186186.4983516-CDS-P-wetherbeei_contig19975:4..361Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19975 5..361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19975.1.1prot_P-wetherbeei_contig19975.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19975 5..361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19975.1.1

>prot_P-wetherbeei_contig19975.1.1 ID=prot_P-wetherbeei_contig19975.1.1|Name=mRNA_P-wetherbeei_contig19975.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
LNRHLRALLRRLGLDEKAPPTAAHWVALLSYLNDHFRTTEEEKHRLTRSL
EIHGREVQSLYKELVQERERLSSALACLDIGFIIFDKAGQVSLMNAEAEQ
YLGFSESESLQKNFLQHLG
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mRNA from alignment at P-wetherbeei_contig19975:5..361-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19975.1.1 ID=mRNA_P-wetherbeei_contig19975.1.1|Name=mRNA_P-wetherbeei_contig19975.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig19975:5..361- (Phaeothamnion wetherbeei SAG_119_79)
TTAAATCGTCACCTTCGGGCGTTGCTGCGTCGTTTAGGACTCGACGAGAA
GGCCCCCCCTACTGCCGCGCACTGGGTGGCCCTCCTCTCCTACCTCAACG
ATCATTTCCGCACGACCGAAGAAGAAAAGCACCGGCTCACGCGATCGCTG
GAAATCCACGGGCGCGAGGTGCAGAGCCTCTACAAAGAGCTTGTGCAAGA
ACGCGAGCGACTCAGCAGCGCTCTGGCGTGCCTTGATATCGGGTTCATCA
TCTTCGACAAAGCTGGCCAGGTCAGCTTGATGAACGCCGAGGCCGAGCAA
TATCTCGGTTTCAGCGAGAGCGAAAGCCTGCAGAAGAACTTCCTGCAGCA
CCTCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19975:5..361-

>mRNA_P-wetherbeei_contig19975.1.1 ID=mRNA_P-wetherbeei_contig19975.1.1|Name=mRNA_P-wetherbeei_contig19975.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig19975:5..361- (Phaeothamnion wetherbeei SAG_119_79)
TTAAATCGTCACCTTCGGGCGTTGCTGCGTCGTTTAGGACTCGACGAGAA
GGCCCCCCCTACTGCCGCGCACTGGGTGGCCCTCCTCTCCTACCTCAACG
ATCATTTCCGCACGACCGAAGAAGAAAAGCACCGGCTCACGCGATCGCTG
GAAATCCACGGGCGCGAGGTGCAGAGCCTCTACAAAGAGCTTGTGCAAGA
ACGCGAGCGACTCAGCAGCGCTCTGGCGTGCCTTGATATCGGGTTCATCA
TCTTCGACAAAGCTGGCCAGGTCAGCTTGATGAACGCCGAGGCCGAGCAA
TATCTCGGTTTCAGCGAGAGCGAAAGCCTGCAGAAGAACTTCCTGCAGCA
CCTCGGG
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