mRNA_P-wetherbeei_contig19972.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19972.1.1
Unique NamemRNA_P-wetherbeei_contig19972.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19972.1.1 vs. uniprot
Match: A0A1R3V6W7_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium prunaredense TaxID=1631249 RepID=A0A1R3V6W7_9HYPH)

HSP 1 Score: 62.0 bits (149), Expect = 3.130e-10
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = -1 
Query:    1 MRRPHLGERAIKLEARNIPERAAVNATGIWHECHAPYPGSS 123
            MRRPH GE A+K EA++ PE AAV+ATGIWHE HA YPG S
Sbjct:    1 MRRPHPGEGAMKPEAQHHPEGAAVDATGIWHEGHASYPGRS 41
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19972.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1R3V6W7_9HYPH3.130e-1070.73Uncharacterized protein n=1 Tax=Mesorhizobium prun... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19972contigP-wetherbeei_contig19972:90..425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size336
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size150
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186186.456889-UTR-P-wetherbeei_contig19972:89..2451683186186.456889-UTR-P-wetherbeei_contig19972:89..245Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19972 90..245 -
1683186186.4721324-UTR-P-wetherbeei_contig19972:395..4251683186186.4721324-UTR-P-wetherbeei_contig19972:395..425Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19972 396..425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186186.4648201-CDS-P-wetherbeei_contig19972:245..3951683186186.4648201-CDS-P-wetherbeei_contig19972:245..395Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19972 246..395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19972.1.1prot_P-wetherbeei_contig19972.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19972 246..395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19972.1.1

>prot_P-wetherbeei_contig19972.1.1 ID=prot_P-wetherbeei_contig19972.1.1|Name=mRNA_P-wetherbeei_contig19972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=50bp
MPYTCRIYGRPFRDVAGFELYGPLAQVRTPHKRLLFVRPALCLQLLSDS*
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mRNA from alignment at P-wetherbeei_contig19972:90..425-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19972.1.1 ID=mRNA_P-wetherbeei_contig19972.1.1|Name=mRNA_P-wetherbeei_contig19972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig19972:90..425- (Phaeothamnion wetherbeei SAG_119_79)
AGAACTCCCAGGGTAAGGCGCGTGACATTCATGCCATATACCTGTCGCAT
TTACGGCCGCCCTTTCCGGGATGTTGCGGGCTTCGAGCTTTATGGCCCTC
TCGCCCAGGTGCGGACGCCTCATAAGCGCTTGCTGTTCGTCAGGCCGGCA
CTTTGCTTACAGCTTCTTTCAGATTCCTGATCGCTCCAGACACCCTTGCA
GGTCGGCTAGCGGTTCCCACACCCAGGGCCCGCAGTGGACGTCCACCTCC
AAGTCATCGGCCGGCTACCACCCCGGCCAATTGGTGCCTTGCGGCGCCAG
GCGCCATGCTTGGCGCACCATCGAAGAGGCGCTCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19972:90..425-

>mRNA_P-wetherbeei_contig19972.1.1 ID=mRNA_P-wetherbeei_contig19972.1.1|Name=mRNA_P-wetherbeei_contig19972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=150bp|location=Sequence derived from alignment at P-wetherbeei_contig19972:90..425- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCATATACCTGTCGCATTTACGGCCGCCCTTTCCGGGATGTTGCGGG
CTTCGAGCTTTATGGCCCTCTCGCCCAGGTGCGGACGCCTCATAAGCGCT
TGCTGTTCGTCAGGCCGGCACTTTGCTTACAGCTTCTTTCAGATTCCTGA
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