mRNA_P-wetherbeei_contig19949.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19949.1.1
Unique NamemRNA_P-wetherbeei_contig19949.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19949.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19949contigP-wetherbeei_contig19949:3..1202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size963
Hectar predicted targeting categorysignal peptide
Exons2
Cds size960
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186185.967485-CDS-P-wetherbeei_contig19949:2..7301683186185.967485-CDS-P-wetherbeei_contig19949:2..730Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19949 3..730 +
1683186185.9779687-CDS-P-wetherbeei_contig19949:968..12001683186185.9779687-CDS-P-wetherbeei_contig19949:968..1200Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19949 969..1200 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19949.1.1prot_P-wetherbeei_contig19949.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19949 3..1200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19949.1.1

>prot_P-wetherbeei_contig19949.1.1 ID=prot_P-wetherbeei_contig19949.1.1|Name=mRNA_P-wetherbeei_contig19949.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=320bp
GTLQGSSLFVWGLPANAAPEDVKTAVAEFSGNAPCHVTLLARRGDGEGPH
DPFVLCAGEEGGTSGSGRNGSGGADCSAGGDDSGSPAAVVAYNSLRWGRT
VAYVTFASTAAAAGVLRACAAAAVVDSVVAADGSSSAAAGSSGAAFGGRL
CIGGVAVGLRRAFPARAIDATEPALPVPAWQPLRPAGAHGASSVDGATPA
SRPSTLRPPPLPLPLEAVVRRKVLVAGLRADVTRPQLDSAFKRFGAIERS
MVRRRPGAYPAAMEGWVIFEAKTAAKAATKCPAGELGLGEAVTVSFAPAP
EALPTRIGRPPRPVIFMKPV
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mRNA from alignment at P-wetherbeei_contig19949:3..1202+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19949.1.1 ID=mRNA_P-wetherbeei_contig19949.1.1|Name=mRNA_P-wetherbeei_contig19949.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1200bp|location=Sequence derived from alignment at P-wetherbeei_contig19949:3..1202+ (Phaeothamnion wetherbeei SAG_119_79)
GGCACGCTCCAAGGGAGCTCGCTGTTCGTATGGGGCCTTCCTGCCAACGC
CGCCCCGGAAGACGTCAAGACGGCAGTCGCCGAATTCTCCGGGAATGCTC
CCTGCCACGTGACGCTTCTGGCGCGGCGCGGTGACGGTGAGGGGCCGCAT
GATCCCTTTGTGCTCTGCGCTGGAGAGGAAGGCGGCACCAGCGGCAGCGG
CCGCAACGGCAGCGGTGGGGCCGACTGCAGCGCCGGCGGCGATGACAGCG
GCAGTCCCGCGGCTGTCGTCGCTTACAACAGTCTGCGCTGGGGGAGAACC
GTTGCGTACGTAACGTTTGCCTCCACAGCCGCGGCGGCCGGCGTGCTGCG
CGCCTGCGCCGCCGCCGCCGTCGTCGACAGCGTCGTCGCCGCTGACGGCA
GCAGTAGTGCCGCCGCTGGCAGTAGCGGTGCCGCTTTCGGCGGCCGCCTT
TGCATAGGGGGAGTGGCCGTCGGCTTGCGTCGCGCCTTTCCGGCAAGAGC
CATCGACGCCACCGAGCCCGCGTTGCCGGTGCCGGCGTGGCAGCCTTTGC
GGCCCGCGGGGGCGCACGGCGCCAGTTCCGTGGACGGAGCGACGCCGGCG
TCACGACCATCGACGCTGCGTCCGCCGCCGCTGCCGCTGCCACTGGAAGC
GGTGGTGCGACGCAAGGTGCTGGTGGCGGGCCTCCGCGCGGACGTGACGC
GACCGCAGCTCGACTCTGCTTTCAAAAGGTATGTGGTGGTGTGTGGTGGC
TTTCGGGACTCTTTTTGGCTCTTTCACAAGAAAGCAGTTAATCCTTACCA
ATGGAATCGTGAACGGATAACTGGCCGCATTCTCCCTCCTTTCTCTGTTT
TGCTCTTTATCTCCTCACGCTGGCGAGCGAGATTATTTAGACGTTATCTG
TATCTGGTTGCAACGAGAATAGTGTTTTTTTTAACTTCCTTCCTTTCCTC
CCGAATGTGGAGGCAGATTTGGCGCCATCGAGCGCTCCATGGTGCGACGC
CGGCCCGGCGCATACCCCGCGGCCATGGAGGGCTGGGTCATCTTCGAGGC
CAAAACCGCCGCCAAAGCGGCGACCAAGTGCCCCGCCGGCGAGCTTGGTC
TCGGAGAGGCGGTCACGGTGTCGTTTGCACCAGCACCGGAGGCCCTCCCG
ACTCGCATCGGCAGGCCGCCGCGCCCTGTCATTTTCATGAAGCCGGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19949:3..1202+

>mRNA_P-wetherbeei_contig19949.1.1 ID=mRNA_P-wetherbeei_contig19949.1.1|Name=mRNA_P-wetherbeei_contig19949.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=960bp|location=Sequence derived from alignment at P-wetherbeei_contig19949:3..1202+ (Phaeothamnion wetherbeei SAG_119_79)
GGCACGCTCCAAGGGAGCTCGCTGTTCGTATGGGGCCTTCCTGCCAACGC
CGCCCCGGAAGACGTCAAGACGGCAGTCGCCGAATTCTCCGGGAATGCTC
CCTGCCACGTGACGCTTCTGGCGCGGCGCGGTGACGGTGAGGGGCCGCAT
GATCCCTTTGTGCTCTGCGCTGGAGAGGAAGGCGGCACCAGCGGCAGCGG
CCGCAACGGCAGCGGTGGGGCCGACTGCAGCGCCGGCGGCGATGACAGCG
GCAGTCCCGCGGCTGTCGTCGCTTACAACAGTCTGCGCTGGGGGAGAACC
GTTGCGTACGTAACGTTTGCCTCCACAGCCGCGGCGGCCGGCGTGCTGCG
CGCCTGCGCCGCCGCCGCCGTCGTCGACAGCGTCGTCGCCGCTGACGGCA
GCAGTAGTGCCGCCGCTGGCAGTAGCGGTGCCGCTTTCGGCGGCCGCCTT
TGCATAGGGGGAGTGGCCGTCGGCTTGCGTCGCGCCTTTCCGGCAAGAGC
CATCGACGCCACCGAGCCCGCGTTGCCGGTGCCGGCGTGGCAGCCTTTGC
GGCCCGCGGGGGCGCACGGCGCCAGTTCCGTGGACGGAGCGACGCCGGCG
TCACGACCATCGACGCTGCGTCCGCCGCCGCTGCCGCTGCCACTGGAAGC
GGTGGTGCGACGCAAGGTGCTGGTGGCGGGCCTCCGCGCGGACGTGACGC
GACCGCAGCTCGACTCTGCTTTCAAAAGATTTGGCGCCATCGAGCGCTCC
ATGGTGCGACGCCGGCCCGGCGCATACCCCGCGGCCATGGAGGGCTGGGT
CATCTTCGAGGCCAAAACCGCCGCCAAAGCGGCGACCAAGTGCCCCGCCG
GCGAGCTTGGTCTCGGAGAGGCGGTCACGGTGTCGTTTGCACCAGCACCG
GAGGCCCTCCCGACTCGCATCGGCAGGCCGCCGCGCCCTGTCATTTTCAT
GAAGCCGGTT
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