mRNA_P-wetherbeei_contig19947.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19947.1.1
Unique NamemRNA_P-wetherbeei_contig19947.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19947.1.1 vs. uniprot
Match: D7FQQ5_ECTSI (4'-phosphopantetheinyl transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ5_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 2.200e-23
Identity = 62/121 (51.24%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  463 LINAFQLTLPMGRCVGIVIPPELDAPGISAAGAELLPEELDFCLQLPLPMRATFLGGRVAMRRALG-------ALSGQVGPILRNPYGAPVLPPGMSGSISHKRHVAVALLRVGDGPHLGM 804
            L  A    LP GRCVG+ +PP L    ++AAG ELLP+E+ +CL LP  ++  FLGGR+A+RRAL        A S Q   IL N  GAPVLP G+S SISHK+H+AVAL++ G   HLG+
Sbjct:   95 LPTAMDRILPFGRCVGVALPPTLTDDVMTAAGEELLPKEMAYCLGLPRALQLGFLGGRLAIRRALNGMEDVSAAASSQA--ILHNQDGAPVLPEGVSASISHKQHLAVALVQSGCEGHLGI 213          
BLAST of mRNA_P-wetherbeei_contig19947.1.1 vs. uniprot
Match: A0A7S2SQZ6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQZ6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.770e-15
Identity = 55/110 (50.00%), Postives = 68/110 (61.82%), Query Frame = 1
Query:  475 FQLTLPMGRCVGIVIPPELDAPGISAAGAELLPEELDFCLQLPLPMRATFLGGRVAMRRALGA-LSGQVGPILRNPYGAPVLPPGMSGSISHKRHVAVALLRVGDGPHLG 801
            F L    G C+G+ +P   DA   +A   EL  EE+ F   L     A FLGGRVA+RRA+GA L+  VGPI R+  GAPVL  G+ GSISHKRHVAVAL++ G    +G
Sbjct:   80 FSLPFHGGLCLGVQLP---DALADTALPPELHEEEVAFASDLSQIRAAEFLGGRVAIRRAMGAKLAETVGPIHRSSRGAPVLSNGIRGSISHKRHVAVALVQTGPCSPVG 186          
BLAST of mRNA_P-wetherbeei_contig19947.1.1 vs. uniprot
Match: A0A838HLQ8_9BACT (4'-phosphopantetheinyl transferase superfamily protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A838HLQ8_9BACT)

HSP 1 Score: 77.8 bits (190), Expect = 4.300e-13
Identity = 47/110 (42.73%), Postives = 62/110 (56.36%), Query Frame = 1
Query:  475 FQLTLPMGRCVGIVIPPELDAPGISAAGAELLPEELDFCLQLPLPMRATFLGGRVAMRRALGALSGQVGPILRNPYGAPVLPPGMSGSISHKRHVAVALLRVGDGPHLGM 804
            FQ  LP G CVG+ +P   +  G   A  +L  +E      LP   R T++GGRVA+ RAL     Q G IL    GAP LPPG++GS+SHK  +AVAL+    G  +G+
Sbjct:    7 FQRELPHGLCVGVRLPEPSENAG-ELALEQLGADERAHAAGLPFRRRITWVGGRVALHRALERAGQQAGAILATERGAPSLPPGIAGSVSHKEGLAVALVAPAAGWRVGI 115          
BLAST of mRNA_P-wetherbeei_contig19947.1.1 vs. uniprot
Match: D0LIL8_HALO1 (Enterobactin synthase component D n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) TaxID=502025 RepID=D0LIL8_HALO1)

HSP 1 Score: 71.6 bits (174), Expect = 8.320e-11
Identity = 45/111 (40.54%), Postives = 60/111 (54.05%), Query Frame = 1
Query:  472 AFQLTLPMGRCVGIVIPPELDAPGISAAGAELLPEELDFCLQLPLPMRATFLGGRVAMRRALGALSGQVGPILRNPYGAPVLPPGMSGSISHKRHVAVALLRVGDGPHLGM 804
            AF+  LP G CVG+ IP  ++      A   LL EE      L    + T++ GR+A+R AL  L    GP+L +  GAP LP G  GSISHK  +AVAL    +G  +G+
Sbjct:   13 AFERELPAGVCVGVAIP-MMEEGDARVAITGLLDEEQRVASALAARRQPTWVAGRLALRAALQRLGASPGPLLVSARGAPTLPEGFVGSISHKADLAVALAARDEGWRVGV 122          
BLAST of mRNA_P-wetherbeei_contig19947.1.1 vs. uniprot
Match: A0A2W4IZ52_9PROT (Enterobactin synthase component D n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4IZ52_9PROT)

HSP 1 Score: 65.5 bits (158), Expect = 1.110e-8
Identity = 44/114 (38.60%), Postives = 60/114 (52.63%), Query Frame = 1
Query:  448 PSPHGLINAFQLTLPMGRCVGIVIPPELDAPGISAAGAELLPE-ELDFCLQLPLPMRATFLGGRVAMRRALGALSGQVGPILRNPYGAPVLPPGMSGSISHKRHVAVALLRVGD 786
            P       A    +  G    + +P E    GI+    E L E E  F L L    R  ++GGR+A+RRA  A   ++GP+L +  GAPVLPPG+  SISHKR +A AL+  G+
Sbjct:    8 PGAASFAEALVQQVAFGTLAAVALPQE----GIAPEHLEGLHEKERVFALALRGRRRIEWVGGRLALRRAAAARGLELGPVLPSASGAPVLPPGVVASISHKRRLAAALVAEGE 117          
BLAST of mRNA_P-wetherbeei_contig19947.1.1 vs. uniprot
Match: A0A7Y5NQZ5_9DELT (Enterobactin synthase component D n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7Y5NQZ5_9DELT)

HSP 1 Score: 63.2 bits (152), Expect = 5.880e-8
Identity = 39/82 (47.56%), Postives = 49/82 (59.76%), Query Frame = 1
Query:  562 ELLPEELDFCLQLPLPMRATFLGGRVAMRRALGALSGQVGPILRNPYGAPVLPPGMSGSISHKRHVAVALLRVG-DGPHLGM 804
            EL PEE  F   L    RAT+LGGR+A+RRAL A+      IL +  GAP LP  + GSISHK  +A+AL     D  H+G+
Sbjct:   21 ELHPEERAFLRGLEGARRATWLGGRIALRRALAAVGVSCDAILADDRGAPHLPARVRGSISHKETIALALATTALDDDHVGV 102          
BLAST of mRNA_P-wetherbeei_contig19947.1.1 vs. uniprot
Match: A0A7V8YCY2_9DELT (Enterobactin synthase component D n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V8YCY2_9DELT)

HSP 1 Score: 60.1 bits (144), Expect = 7.450e-7
Identity = 39/110 (35.45%), Postives = 55/110 (50.00%), Query Frame = 1
Query:  472 AFQLTLPMGRCVGIVIPPELDAPGISAAGAELLPEELDFCLQLPLPMRATFLGGRVAMRRALGALSGQVGPILRNPYGAPVLPPGMSGSISHKRHVAVALLRVGDGPHLG 801
            AF    P G    + +    DA    A  A L  EE +    L    +  F+ GR+A+RRA   L  +  P+L    GAP +PPG+SGS+SHKR +A+A++       LG
Sbjct:    7 AFHHAAPHGALTAVHLADSPDAVP-EAVLAALPDEEAELARSLRGYRQGQFVAGRLALRRACEQLGSRPPPLLSTDRGAPAMPPGLSGSVSHKRTLAIAMVASDRAGTLG 115          
BLAST of mRNA_P-wetherbeei_contig19947.1.1 vs. uniprot
Match: A0A4P5W281_9DELT (Enterobactin synthase component D n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A4P5W281_9DELT)

HSP 1 Score: 59.7 bits (143), Expect = 9.100e-7
Identity = 47/116 (40.52%), Postives = 63/116 (54.31%), Query Frame = 1
Query:  472 AFQLTLPMGRCVGIVIP--PELDAPGISA--AGAELLPEELDFCLQLPLPMRATFLGGRVAMRRALGALSGQVGPILRNPYGAPVLPPGMSGSISHKRHVAVALL---RVGDGPHL 798
            AF   LP G  VG  +P  P+   P I A   GAE    E      L    +  F+GGR+A+  A G L  +  P+L + +GAP+LP G+ GSI+HK+ +AVAL+   RVG G  L
Sbjct:   13 AFVYALPHGVAVGYHLPEGPDPVDPEILARLTGAERTHAEA-----LRGYRQVQFVGGRLALAVAFGELGTRRAPVLTDEHGAPILPEGLVGSITHKQDLAVALVARGRVGVGVDL 123          
BLAST of mRNA_P-wetherbeei_contig19947.1.1 vs. uniprot
Match: A0A7S1U184_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U184_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.180e-6
Identity = 52/148 (35.14%), Postives = 64/148 (43.24%), Query Frame = 1
Query:  457 HGLINAFQLTLPMGRCVGIVIP--------------------PELDAPGISAAG---------AELLPEELDFCLQLPLPMRATFLGGRVAMRRALGALS-GQVGPILRNPYGAPVLPPGMSGSISHKRHVAVALLRVGDGPHLGMLE 810
             GL       LP GRC G+ +P                     E    G +AA          A L   EL   + +    R  FL GR+AMRR L A     VGPIL++ +GAP LP  +SGSISHK  VA+AL     G   G+ E
Sbjct:   53 EGLSEMVNAELPEGRCFGVRLPRPSSITDEVLQAALEAKVAAQEGSGGGAAAAAINGNQVGELACLDAAELHIAMGMSNFERGPFLAGRLAMRRCLEAGGVPPVGPILKDCFGAPTLPQHVSGSISHKTPVALALCAERSGAPSGVRE 200          
BLAST of mRNA_P-wetherbeei_contig19947.1.1 vs. uniprot
Match: UPI00047C2692 (4'-phosphopantetheinyl transferase superfamily protein n=1 Tax=Gemmatimonas phototrophica TaxID=1379270 RepID=UPI00047C2692)

HSP 1 Score: 58.2 bits (139), Expect = 3.300e-6
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  553 AGAELLPEELDFCLQLPLPMRATFLGGRVAMRRALGALS-----GQVGPILRNPYGAPVLPPGMSGSISHKRHVAVALL--RVGDGPHLGM-LEGR 816
            AGA L P E      LP   RATF+ GRVA+R A+  L+     G   P+LR   GAP+LPP ++GS++HK  +A+A +  R G   H+G+ LE R
Sbjct:   32 AGA-LHPLEASLARSLPAARRATFVAGRVALRDAMAQLADVPLTGNT-PVLRTHRGAPLLPPQITGSVTHKSTLAMAAVAPRQGTLQHVGLDLEHR 125          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19947.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FQQ5_ECTSI2.200e-2351.244'-phosphopantetheinyl transferase n=1 Tax=Ectocar... [more]
A0A7S2SQZ6_9STRA2.770e-1550.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A838HLQ8_9BACT4.300e-1342.734'-phosphopantetheinyl transferase superfamily pro... [more]
D0LIL8_HALO18.320e-1140.54Enterobactin synthase component D n=1 Tax=Haliangi... [more]
A0A2W4IZ52_9PROT1.110e-838.60Enterobactin synthase component D n=1 Tax=Proteoba... [more]
A0A7Y5NQZ5_9DELT5.880e-847.56Enterobactin synthase component D n=1 Tax=Polyangi... [more]
A0A7V8YCY2_9DELT7.450e-735.45Enterobactin synthase component D n=1 Tax=Deltapro... [more]
A0A4P5W281_9DELT9.100e-740.52Enterobactin synthase component D n=1 Tax=Deltapro... [more]
A0A7S1U184_9STRA2.180e-635.14Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
UPI00047C26923.300e-643.754'-phosphopantetheinyl transferase superfamily pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19947contigP-wetherbeei_contig19947:24..1008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQQ5
PFAMsACPS
Model size985
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons1
Evalue5.52e-25
EggNOG OGs2EAJI@1|root,2SGT3@2759|Eukaryota
Ec32 ortholog description4'-phosphopantetheinyl transferase superfamily
Ec32 orthologEc-01_000130.1
Description4'-phosphopantetheinyl transferase superfamily
Cds size666
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186185.9207864-UTR-P-wetherbeei_contig19947:23..1851683186185.9207864-UTR-P-wetherbeei_contig19947:23..185Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19947 24..185 +
1683186185.9396596-UTR-P-wetherbeei_contig19947:851..10081683186185.9396596-UTR-P-wetherbeei_contig19947:851..1008Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19947 852..1008 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186185.930427-CDS-P-wetherbeei_contig19947:185..8511683186185.930427-CDS-P-wetherbeei_contig19947:185..851Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19947 186..851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19947.1.1prot_P-wetherbeei_contig19947.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19947 186..851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19947.1.1

>prot_P-wetherbeei_contig19947.1.1 ID=prot_P-wetherbeei_contig19947.1.1|Name=mRNA_P-wetherbeei_contig19947.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=222bp
MRALAWRTLCANAAFGSSWSPYCGSGAVLSCHRETSTLIAKRGFSGRMYH
PFSSRCSLLTPPLLLPHSYAVGRHGGLAATAVEKADGAPDTASDAPSPHG
LINAFQLTLPMGRCVGIVIPPELDAPGISAAGAELLPEELDFCLQLPLPM
RATFLGGRVAMRRALGALSGQVGPILRNPYGAPVLPPGMSGSISHKRHVA
VALLRVGDGPHLGMLEGRAKS*
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mRNA from alignment at P-wetherbeei_contig19947:24..1008+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19947.1.1 ID=mRNA_P-wetherbeei_contig19947.1.1|Name=mRNA_P-wetherbeei_contig19947.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=985bp|location=Sequence derived from alignment at P-wetherbeei_contig19947:24..1008+ (Phaeothamnion wetherbeei SAG_119_79)
TGCCCCACAATATTCCAAAGAATATGCTAGCATAATCCCCCTGGCCCTAA CGCCGACCACAGCCAACCTTCGCCGCTACCCTTTTTTGCTACCGGCTCTC CTTACCCTTTTCGAATTCAAGCTAGTCGCCGTCTTGTCGTCTTCCTATGG GAGAAAGATGACATGCGAGCACTCGCCTGGCGCACACTGTGTGCCAACGC GGCCTTCGGCTCGTCCTGGTCTCCTTATTGTGGCAGCGGCGCCGTGCTTT CATGCCATAGAGAGACTAGCACGCTAATAGCGAAGAGAGGATTTTCAGGA AGGATGTACCATCCTTTCTCCTCGCGATGCTCCCTCCTGACACCGCCACT GCTTCTCCCGCACAGCTATGCTGTCGGGCGGCACGGCGGTTTGGCGGCGA CTGCCGTGGAGAAGGCTGACGGCGCACCTGACACTGCCTCTGATGCCCCA TCCCCGCATGGGCTGATCAACGCCTTCCAGTTGACGCTGCCGATGGGAAG GTGCGTGGGCATAGTCATCCCGCCGGAACTCGATGCGCCAGGCATCTCCG CCGCGGGCGCCGAGCTGCTGCCCGAAGAGCTGGACTTCTGCCTGCAGTTG CCATTGCCGATGCGTGCCACTTTTCTCGGCGGCCGCGTGGCGATGCGACG AGCACTGGGAGCGCTGTCCGGTCAAGTTGGGCCCATATTGCGGAATCCGT ACGGCGCCCCGGTGCTGCCGCCGGGCATGTCTGGATCCATCAGCCACAAG CGGCACGTGGCAGTAGCCTTGCTTCGCGTCGGCGACGGCCCGCACCTAGG TATGCTGGAAGGAAGAGCGAAGAGCTGACTCTGAAAAGGCGGAAAAGAGC AAGAAACGAACAGCTGTTTCATATCCCTTTTTAATGAAACATCTACACAC CGCTCAAAAAGTCTCTCGTTTTGGGGTCAAATGCAATAATATTTTGCTGA GCTGTGTGTAACGACGAGCCCGCGCATAGTCCTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19947:24..1008+

>mRNA_P-wetherbeei_contig19947.1.1 ID=mRNA_P-wetherbeei_contig19947.1.1|Name=mRNA_P-wetherbeei_contig19947.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=666bp|location=Sequence derived from alignment at P-wetherbeei_contig19947:24..1008+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGAGCACTCGCCTGGCGCACACTGTGTGCCAACGCGGCCTTCGGCTC
GTCCTGGTCTCCTTATTGTGGCAGCGGCGCCGTGCTTTCATGCCATAGAG
AGACTAGCACGCTAATAGCGAAGAGAGGATTTTCAGGAAGGATGTACCAT
CCTTTCTCCTCGCGATGCTCCCTCCTGACACCGCCACTGCTTCTCCCGCA
CAGCTATGCTGTCGGGCGGCACGGCGGTTTGGCGGCGACTGCCGTGGAGA
AGGCTGACGGCGCACCTGACACTGCCTCTGATGCCCCATCCCCGCATGGG
CTGATCAACGCCTTCCAGTTGACGCTGCCGATGGGAAGGTGCGTGGGCAT
AGTCATCCCGCCGGAACTCGATGCGCCAGGCATCTCCGCCGCGGGCGCCG
AGCTGCTGCCCGAAGAGCTGGACTTCTGCCTGCAGTTGCCATTGCCGATG
CGTGCCACTTTTCTCGGCGGCCGCGTGGCGATGCGACGAGCACTGGGAGC
GCTGTCCGGTCAAGTTGGGCCCATATTGCGGAATCCGTACGGCGCCCCGG
TGCTGCCGCCGGGCATGTCTGGATCCATCAGCCACAAGCGGCACGTGGCA
GTAGCCTTGCTTCGCGTCGGCGACGGCCCGCACCTAGGTATGCTGGAAGG
AAGAGCGAAGAGCTGA
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