mRNA_P-wetherbeei_contig19940.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19940.1.1
Unique NamemRNA_P-wetherbeei_contig19940.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19940.1.1 vs. uniprot
Match: A0A835YHE9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHE9_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.460e-12
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 FRNSYLWDRTAGVLYVHARRLASSGDLGLVLVHAAAHI 114
            FRNSYLWD  A  LYVHARRL  SGD GLVLVHAAAH+
Sbjct:   59 FRNSYLWDADARALYVHARRLGGSGDFGLVLVHAAAHL 96
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BLAST of mRNA_P-wetherbeei_contig19940.1.1 vs. uniprot
Match: D8LR26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR26_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 3.240e-11
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 FRNSYLWDRTAGVLYVHARRLASSGDLGLVLVHAAAHIRV 120
            FRNSYLW+ + GVL +H RRL+SSGD GLVLVHAAAHI V
Sbjct: 6562 FRNSYLWEASTGVLNLHVRRLSSSGDFGLVLVHAAAHIHV 6601
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BLAST of mRNA_P-wetherbeei_contig19940.1.1 vs. uniprot
Match: A0A6H5KWQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ4_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.240e-11
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 FRNSYLWDRTAGVLYVHARRLASSGDLGLVLVHAAAHIRV 120
            FRNSYLW+ + GVL +H RRL+SSGD GLVLVHAAAHI V
Sbjct: 2877 FRNSYLWEASTGVLNLHVRRLSSSGDFGLVLVHAAAHIHV 2916
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BLAST of mRNA_P-wetherbeei_contig19940.1.1 vs. uniprot
Match: A0A2E9D1H1_9GAMM (Uncharacterized protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A2E9D1H1_9GAMM)

HSP 1 Score: 57.0 bits (136), Expect = 2.320e-8
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 FRNSYLWDRTAGVLYVHARRLASSGDLGLVLVHAAAHIRV 120
            F+NSYL+D ++ VLY+H  RL+SSGD GLV +HA +HI+V
Sbjct:  497 FKNSYLYDESSQVLYIHTTRLSSSGDFGLVAIHALSHIKV 536
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19940.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YHE9_9STRA3.460e-1278.95Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LR26_ECTSI3.240e-1175.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWQ4_9PHAE3.240e-1175.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2E9D1H1_9GAMM2.320e-860.00Uncharacterized protein n=1 Tax=Chromatiales bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19940contigP-wetherbeei_contig19940:3..122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LR26
PFAMsDUF3338,Ephrin_rec_like,FERM_C,FERM_M,FERM_N,Myosin_N,Myosin_head,Myosin_tail_1
Model size120
Max annot lvl2759|Eukaryota
KEGG koko:K16726,ko:K17751
KEGG Pathwayko04260,ko04261,ko05416,map04260,map04261,map05416
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue5.31e-12
EggNOG OGsCOG5022@1|root,KOG1217@1|root,KOG3529@1|root,KOG0161@2759|Eukaryota,KOG1217@2759|Eukaryota,KOG3529@2759|Eukaryota
Descriptionactin binding
Cds size120
COG categoryO
BRITEko00000,ko00001,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186185.7646267-CDS-P-wetherbeei_contig19940:2..1221683186185.7646267-CDS-P-wetherbeei_contig19940:2..122Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19940 3..122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19940.1.1prot_P-wetherbeei_contig19940.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19940 3..122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19940.1.1

>prot_P-wetherbeei_contig19940.1.1 ID=prot_P-wetherbeei_contig19940.1.1|Name=mRNA_P-wetherbeei_contig19940.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=40bp
FRNSYLWDRTAGVLYVHARRLASSGDLGLVLVHAAAHIRV
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mRNA from alignment at P-wetherbeei_contig19940:3..122+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19940.1.1 ID=mRNA_P-wetherbeei_contig19940.1.1|Name=mRNA_P-wetherbeei_contig19940.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=120bp|location=Sequence derived from alignment at P-wetherbeei_contig19940:3..122+ (Phaeothamnion wetherbeei SAG_119_79)
TTCCGCAACTCGTACCTGTGGGATCGCACCGCTGGCGTGCTATACGTGCA
TGCGCGACGGCTGGCGAGCAGCGGCGACCTTGGGCTCGTGCTAGTGCACG
CTGCGGCCCACATCCGCGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19940:3..122+

>mRNA_P-wetherbeei_contig19940.1.1 ID=mRNA_P-wetherbeei_contig19940.1.1|Name=mRNA_P-wetherbeei_contig19940.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=120bp|location=Sequence derived from alignment at P-wetherbeei_contig19940:3..122+ (Phaeothamnion wetherbeei SAG_119_79)
TTCCGCAACTCGTACCTGTGGGATCGCACCGCTGGCGTGCTATACGTGCA
TGCGCGACGGCTGGCGAGCAGCGGCGACCTTGGGCTCGTGCTAGTGCACG
CTGCGGCCCACATCCGCGTA
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