mRNA_P-wetherbeei_contig19920.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19920.1.1
Unique NamemRNA_P-wetherbeei_contig19920.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19920.1.1 vs. uniprot
Match: A0A835YVT9_9STRA (Ha-tagged protein kinase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVT9_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.280e-20
Identity = 50/86 (58.14%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    1 VLGRGAHGIVYRGVLA-SGASVAVKQIRTEGMGDAELRAVENEIRMIRQLKHRNVISYLGVDREADNALNIFLEYVDGGSLRRLLQ 255
            +LGRGA G+VY+  L  SG +VAVK I  +G+ + ELRAVENEI M+R L H NV+ YLG++    + LNIFLEYVDGGSLR++L+
Sbjct:   43 MLGRGAFGVVYKARLVPSGETVAVKTINIDGLNENELRAVENEIMMMRHLHHPNVVHYLGMEAHPKH-LNIFLEYVDGGSLRKMLE 127          
BLAST of mRNA_P-wetherbeei_contig19920.1.1 vs. uniprot
Match: A0A6H5JLC6_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLC6_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.230e-18
Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 1
Query:    4 LGRGAHGIVYRG-VLASGASVAVKQIRTEGMGDAELRAVENEIRMIRQLKHRNVISYLGVDREADNALNIFLEYVDGGSLRRLL 252
            LGRGAHG VYR  VL +  S+AVKQI    M  +EL+  ENEI ++R+L+H NV+ +LGV R  D+ LNIFLEY+DGGSLRR L
Sbjct:   84 LGRGAHGTVYRALVLGTSDSIAVKQILMTRMQKSELQVAENEIGVLRRLRHPNVVPFLGVQRVGDH-LNIFLEYMDGGSLRRRL 166          
BLAST of mRNA_P-wetherbeei_contig19920.1.1 vs. uniprot
Match: A0A7S2RVT5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVT5_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.250e-18
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 VLGRGAHGIVYRGVLA-SGASVAVKQIRTEGMGDAELRAVENEIRMIRQLKHRNVISYLGVDREADNALNIFLEYVDGGSLRRLLQ 255
            ++GRG  G VY G +  +G  +AVK I  +GM   ELR +ENEIRMIR L+HR+++ YLG+ + A + LNIFLEY  GGSLR+LLQ
Sbjct:   56 IIGRGGFGTVYLGTIQETGQQMAVKTILIQGMNTKELRNIENEIRMIRDLRHRHIVRYLGMQKTATD-LNIFLEYAAGGSLRQLLQ 140          
BLAST of mRNA_P-wetherbeei_contig19920.1.1 vs. uniprot
Match: A0A7S1UI26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UI26_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.710e-14
Identity = 39/84 (46.43%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    1 VLGRGAHGIVYRGVLA-SGASVAVKQIRTEGMGDAELRAVENEIRMIRQLKHRNVISYLGVDREADNA--LNIFLEYVDGGSLR 243
            V+GRGAHG VY G++A +GA +AVKQI    + +++LRAV  EI ++R+ +H  ++ YLG +  + +    +IFLE+V+GGSLR
Sbjct:   30 VVGRGAHGTVYLGIVAGTGAHIAVKQISIVDISESDLRAVAAEINLVRRAEHPYIVRYLGAEVSSSDPGFFDIFLEFVEGGSLR 113          
BLAST of mRNA_P-wetherbeei_contig19920.1.1 vs. uniprot
Match: A0A482RS88_9ARCH (Protein kinase domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RS88_9ARCH)

HSP 1 Score: 75.1 bits (183), Expect = 2.880e-14
Identity = 41/85 (48.24%), Postives = 62/85 (72.94%), Query Frame = 1
Query:    1 VLGRGAHGIVYRGV-LASGASVAVKQIRTEGMGDAELRAVENEIRMIRQLKHRNVISYLGVDREADNALNIFLEYVDGGSLRRLL 252
            VLG+GA G VY G+ + +G  +AVKQ+ T+ +   EL ++ENEI ++R L+H N++ Y+G +  A +AL+IFLEYV GGSL+ L+
Sbjct:  159 VLGQGAFGTVYLGLNIDTGELMAVKQMATDEVSRRELSSLENEISLLRTLRHVNIVRYIGTELSA-SALSIFLEYVPGGSLKALI 242          
BLAST of mRNA_P-wetherbeei_contig19920.1.1 vs. uniprot
Match: A0A7S0P6C2_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0P6C2_CAFRO)

HSP 1 Score: 70.5 bits (171), Expect = 5.010e-13
Identity = 37/85 (43.53%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    4 LGRGAHGIVYRGV-LASGASVAVKQIRTEGMGDAELRAVENEIRMIRQLKHRNVISYLGVDREADNALNIFLEYVDGGSLRRLLQ 255
            LG GA G V++G+ + +G  +A+KQI +  +   EL A+E E+ ++R  +H N++ YLG  RE D  L +FLEYV GGS++R+L+
Sbjct:   19 LGAGAVGTVFQGLNVDTGELMAIKQIDSADLSARELAALEQEVSLLRSFRHPNIVRYLGAQREGDT-LCVFLEYVPGGSVKRVLE 102          
BLAST of mRNA_P-wetherbeei_contig19920.1.1 vs. uniprot
Match: A0A175YQP2_DAUCS (Protein kinase domain-containing protein n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A175YQP2_DAUCS)

HSP 1 Score: 72.4 bits (176), Expect = 5.910e-13
Identity = 37/85 (43.53%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    4 LGRGAHGIVYRGV-LASGASVAVKQIRTEGMGDAELRAVENEIRMIRQLKHRNVISYLGVDREADNALNIFLEYVDGGSLRRLLQ 255
            +GRGAHG VY+ + L +G  VAVKQ+  E + D EL+ + NEI +++ L H+N++ YLG  +  ++ L+I LEYV+ GSL  +++
Sbjct:   27 IGRGAHGRVYKALNLENGQFVAVKQVSLENIKDEELKNIMNEIDLLKNLDHKNIVQYLGSSK-TESHLHIILEYVENGSLANIIK 110          
BLAST of mRNA_P-wetherbeei_contig19920.1.1 vs. uniprot
Match: M2XTT0_GALSU (Acyl carrier protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XTT0_GALSU)

HSP 1 Score: 72.0 bits (175), Expect = 8.120e-13
Identity = 35/83 (42.17%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    4 LGRGAHGIVYRGV-LASGASVAVKQIRTEGMGDAELRAVENEIRMIRQLKHRNVISYLGVDREA-DNALNIFLEYVDGGSLRR 246
            +G+G +G V+ G  L SG  VA+KQ+ T+G+   E+ ++++EI+++R L+HRN++ Y+G   E  D+ +NI +EYV+GGSL +
Sbjct:   24 IGKGRYGAVFEGFDLESGRVVAIKQLPTKGIPIEEVNSLKSEIKLLRNLQHRNIVEYIGFHEEKEDDKVNIIMEYVEGGSLAK 106          
BLAST of mRNA_P-wetherbeei_contig19920.1.1 vs. uniprot
Match: C1E1Y9_MICCC (Protein kinase domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E1Y9_MICCC)

HSP 1 Score: 71.2 bits (173), Expect = 1.430e-12
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 VLGRGAHGIVYRGV-LASGASVAVKQIRTEGMGDAELRAVENEIRMIRQLKHRNVISYLGVDREADNALNIFLEYVDGGSLRRLLQ 255
            ++G G  G VY G+ L +G  +AVKQI         +R +E E+ ++R+LKH N++SYLG +R  ++   IF+EYV GGS+  LLQ
Sbjct:  128 LVGSGGFGRVYVGLDLDTGGMLAVKQIAIAPRISRSVRRIEQEVALMRRLKHPNIVSYLGTERTREDVFTIFMEYVSGGSIHSLLQ 213          
BLAST of mRNA_P-wetherbeei_contig19920.1.1 vs. uniprot
Match: A0A388JNT3_CHABU (Protein kinase domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JNT3_CHABU)

HSP 1 Score: 71.2 bits (173), Expect = 1.520e-12
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    1 VLGRGAHGIVYRGV-LASGASVAVKQI------RTEGMGDAELRAVENEIRMIRQLKHRNVISYLGVDREADNALNIFLEYVDGGSLRRLL 252
            ++G GA+G VY G+ L SG  +AVKQ+       T+      +R +E E+ ++R L H N++ YLG DRE D ALNIFLE+V GGS+  LL
Sbjct:  478 LIGAGAYGRVYMGMNLDSGELLAVKQVLIAVNSTTKERAQEHIRGLEEEVAVLRNLSHLNIVRYLGTDREED-ALNIFLEFVPGGSIASLL 567          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19920.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVT9_9STRA1.280e-2058.14Ha-tagged protein kinase (Fragment) n=1 Tax=Tribon... [more]
A0A6H5JLC6_9PHAE1.230e-1859.52Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A7S2RVT5_9STRA2.250e-1854.65Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1UI26_9STRA1.710e-1446.43Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A482RS88_9ARCH2.880e-1448.24Protein kinase domain-containing protein (Fragment... [more]
A0A7S0P6C2_CAFRO5.010e-1343.53Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A175YQP2_DAUCS5.910e-1343.53Protein kinase domain-containing protein n=2 Tax=D... [more]
M2XTT0_GALSU8.120e-1342.17Acyl carrier protein n=1 Tax=Galdieria sulphuraria... [more]
C1E1Y9_MICCC1.430e-1243.02Protein kinase domain-containing protein n=1 Tax=M... [more]
A0A388JNT3_CHABU1.520e-1246.15Protein kinase domain-containing protein n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19920contigP-wetherbeei_contig19920:23..277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LT93
PFAMsPkinase
Model size255
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.93e-20
EggNOG OGsKOG0198@1|root,KOG0198@2759|Eukaryota
DescriptionMAP kinase kinase kinase activity
Cds size255
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186185.3635602-CDS-P-wetherbeei_contig19920:22..2771683186185.3635602-CDS-P-wetherbeei_contig19920:22..277Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19920 23..277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19920.1.1prot_P-wetherbeei_contig19920.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19920 23..277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19920.1.1

>prot_P-wetherbeei_contig19920.1.1 ID=prot_P-wetherbeei_contig19920.1.1|Name=mRNA_P-wetherbeei_contig19920.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
VLGRGAHGIVYRGVLASGASVAVKQIRTEGMGDAELRAVENEIRMIRQLK
HRNVISYLGVDREADNALNIFLEYVDGGSLRRLLQ
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mRNA from alignment at P-wetherbeei_contig19920:23..277-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19920.1.1 ID=mRNA_P-wetherbeei_contig19920.1.1|Name=mRNA_P-wetherbeei_contig19920.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig19920:23..277- (Phaeothamnion wetherbeei SAG_119_79)
GTGCTCGGCCGCGGCGCCCACGGCATCGTCTACCGCGGCGTGCTGGCGAG CGGTGCAAGCGTCGCCGTGAAGCAGATCCGCACCGAAGGTATGGGGGACG CCGAGCTGCGAGCGGTGGAGAACGAGATCCGGATGATCCGACAACTGAAG CACCGCAACGTCATTAGCTACTTGGGGGTAGACCGCGAGGCGGACAACGC CCTCAACATCTTTCTCGAGTACGTTGACGGTGGCTCGTTGCGCCGATTGC TGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19920:23..277-

>mRNA_P-wetherbeei_contig19920.1.1 ID=mRNA_P-wetherbeei_contig19920.1.1|Name=mRNA_P-wetherbeei_contig19920.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig19920:23..277- (Phaeothamnion wetherbeei SAG_119_79)
GTGCTCGGCCGCGGCGCCCACGGCATCGTCTACCGCGGCGTGCTGGCGAG
CGGTGCAAGCGTCGCCGTGAAGCAGATCCGCACCGAAGGTATGGGGGACG
CCGAGCTGCGAGCGGTGGAGAACGAGATCCGGATGATCCGACAACTGAAG
CACCGCAACGTCATTAGCTACTTGGGGGTAGACCGCGAGGCGGACAACGC
CCTCAACATCTTTCTCGAGTACGTTGACGGTGGCTCGTTGCGCCGATTGC
TGCAG
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