mRNA_P-wetherbeei_contig19914.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19914.1.1
Unique NamemRNA_P-wetherbeei_contig19914.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19914.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19914contigP-wetherbeei_contig19914:290..586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog232721.Ajs_2717
PFAMsCopK
Model size297
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue0.00021
EggNOG OGs2CUBQ@1|root,32SV0@2|Bacteria,1N5HH@1224|Proteobacteria,2VUMT@28216|Betaproteobacteria,4AFYP@80864|Comamonadaceae
DescriptionCopper resistance protein K
Cds size291
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186185.1262403-UTR-P-wetherbeei_contig19914:289..2951683186185.1262403-UTR-P-wetherbeei_contig19914:289..295Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19914 290..295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186185.1653068-CDS-P-wetherbeei_contig19914:295..5861683186185.1653068-CDS-P-wetherbeei_contig19914:295..586Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19914 296..586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19914.1.1prot_P-wetherbeei_contig19914.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19914 296..586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19914.1.1

>prot_P-wetherbeei_contig19914.1.1 ID=prot_P-wetherbeei_contig19914.1.1|Name=mRNA_P-wetherbeei_contig19914.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
MKKLLVAMLLTGVMGTWAVAQAEEAIPEKLDLKDGGTLFLHPDGTSRMVD
AHGKKMDMADGVEMELKDGQVVMMKNKKVWMRHGPPGKGHEGMMND*
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mRNA from alignment at P-wetherbeei_contig19914:290..586+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19914.1.1 ID=mRNA_P-wetherbeei_contig19914.1.1|Name=mRNA_P-wetherbeei_contig19914.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig19914:290..586+ (Phaeothamnion wetherbeei SAG_119_79)
AAGAATATGAAGAAATTGCTTGTTGCGATGTTACTGACCGGCGTCATGGG
AACGTGGGCCGTGGCGCAAGCCGAAGAGGCCATACCGGAAAAGCTCGATC
TCAAGGATGGGGGCACGCTTTTTCTGCATCCGGATGGCACGAGTCGGATG
GTCGATGCTCATGGGAAAAAGATGGACATGGCGGACGGCGTCGAAATGGA
ACTCAAGGATGGCCAGGTCGTAATGATGAAGAACAAAAAGGTATGGATGC
GCCACGGGCCGCCCGGCAAAGGCCATGAAGGAATGATGAACGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19914:290..586+

>mRNA_P-wetherbeei_contig19914.1.1 ID=mRNA_P-wetherbeei_contig19914.1.1|Name=mRNA_P-wetherbeei_contig19914.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig19914:290..586+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGAAATTGCTTGTTGCGATGTTACTGACCGGCGTCATGGGAACGTG
GGCCGTGGCGCAAGCCGAAGAGGCCATACCGGAAAAGCTCGATCTCAAGG
ATGGGGGCACGCTTTTTCTGCATCCGGATGGCACGAGTCGGATGGTCGAT
GCTCATGGGAAAAAGATGGACATGGCGGACGGCGTCGAAATGGAACTCAA
GGATGGCCAGGTCGTAATGATGAAGAACAAAAAGGTATGGATGCGCCACG
GGCCGCCCGGCAAAGGCCATGAAGGAATGATGAACGACTGA
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