mRNA_P-wetherbeei_contig19911.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19911.1.1
Unique NamemRNA_P-wetherbeei_contig19911.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19911.1.1 vs. uniprot
Match: A0A836CKP3_9STRA (Dynamin central region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKP3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.650e-15
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 LTLLSKFATNFQAAVDGRGSSPDGIEMNELYGGARIRRV 117
            LTLLSKFATNFQAAVDGRGSSPDGIEMNELYGGARI  V
Sbjct:  358 LTLLSKFATNFQAAVDGRGSSPDGIEMNELYGGARISYV 396
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BLAST of mRNA_P-wetherbeei_contig19911.1.1 vs. uniprot
Match: D7FVF0_ECTSI (Dnm1, dynamin-related GTPase involved in mitochondrial division n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVF0_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 8.260e-14
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 LTLLSKFATNFQAAVDGRGSSPDGIEMNELYGGARIRRV 117
            LTLLSKFA+NF AAVDGRGSSPDGIEMNELYGGARI  +
Sbjct:  432 LTLLSKFASNFHAAVDGRGSSPDGIEMNELYGGARISYI 470
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BLAST of mRNA_P-wetherbeei_contig19911.1.1 vs. uniprot
Match: A0A7S2V112_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V112_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.630e-9
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 LTLLSKFATNFQAAVDGRGSSPDGIEMNELYGGARI 108
            LTLLSKFA+NFQ+AVDG+ SS  GIEM EL+GGARI
Sbjct:  379 LTLLSKFASNFQSAVDGKNSSSRGIEMTELHGGARI 414
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BLAST of mRNA_P-wetherbeei_contig19911.1.1 vs. uniprot
Match: A0A7S3Y4P9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4P9_HETAK)

HSP 1 Score: 58.9 bits (141), Expect = 4.640e-9
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 LTLLSKFATNFQAAVDGRGSSPDGIEMNELYGGARI 108
            L LLSKFAT FQ+AVDG+ +S  GIEMNELYGGARI
Sbjct:  359 LQLLSKFATTFQSAVDGKSTSNKGIEMNELYGGARI 394
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BLAST of mRNA_P-wetherbeei_contig19911.1.1 vs. uniprot
Match: A0A024FVY3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FVY3_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.980e-7
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 LTLLSKFATNFQAAVDGRGSSPDGIEMNELYGGARIRRV 117
            L L+S FATNF  ++DGR +SP+G+EM ELYGGARI  +
Sbjct:  339 LHLISHFATNFSNSLDGRHNSPNGMEMQELYGGARIHYI 377
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BLAST of mRNA_P-wetherbeei_contig19911.1.1 vs. uniprot
Match: F0W9Q8_9STRA (Dynamin GTPase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W9Q8_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.700e-7
Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 LTLLSKFATNFQAAVDGRGSSPDGIEMNELYGGARIRRV 117
            L L+S F+TNF  ++DGR +SP+GIE++ELYGGARI  +
Sbjct:  341 LHLISHFSTNFSNSLDGRHNSPNGIELHELYGGARIHYI 379
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BLAST of mRNA_P-wetherbeei_contig19911.1.1 vs. uniprot
Match: A0A8K1C5A9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5A9_PYTOL)

HSP 1 Score: 50.4 bits (119), Expect = 4.540e-6
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 LTLLSKFATNFQAAVDGRGSSPDGIEMNELYGGARIRRV 117
            L L+S F+ NF  ++DGR  S +G+EMNELYGGARI  +
Sbjct:  335 LNLISHFSANFTNSLDGRNHSLNGVEMNELYGGARISYI 373
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BLAST of mRNA_P-wetherbeei_contig19911.1.1 vs. uniprot
Match: K3XBJ4_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3XBJ4_GLOUD)

HSP 1 Score: 49.3 bits (116), Expect = 1.160e-5
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 LTLLSKFATNFQAAVDGRGSSPDGIEMNELYGGARIRRV 117
            L L+S F+ NF  ++DGR  + +G+EMNELYGGARI  +
Sbjct:  347 LNLISHFSANFTNSLDGRNHALNGVEMNELYGGARISYI 385
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BLAST of mRNA_P-wetherbeei_contig19911.1.1 vs. uniprot
Match: A0A2D4BI22_PYTIN (Dynamin-2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BI22_PYTIN)

HSP 1 Score: 48.9 bits (115), Expect = 1.590e-5
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 LTLLSKFATNFQAAVDGRGSSPDGIEMNELYGGARIRRV 117
            L L+S  A NF  ++DGR  S +G+EMNELYGGARI  +
Sbjct:  344 LNLISHVAANFTNSLDGRNHSLNGVEMNELYGGARISYI 382
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19911.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A836CKP3_9STRA3.650e-1594.87Dynamin central region-domain-containing protein n... [more]
D7FVF0_ECTSI8.260e-1487.18Dnm1, dynamin-related GTPase involved in mitochond... [more]
A0A7S2V112_9STRA4.630e-977.78Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3Y4P9_HETAK4.640e-977.78Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A024FVY3_9STRA1.980e-761.54Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F0W9Q8_9STRA3.700e-758.97Dynamin GTPase putative n=1 Tax=Albugo laibachii N... [more]
A0A8K1C5A9_PYTOL4.540e-656.41Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3XBJ4_GLOUD1.160e-553.85Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A2D4BI22_PYTIN1.590e-556.41Dynamin-2 n=1 Tax=Pythium insidiosum TaxID=114742 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19911contigP-wetherbeei_contig19911:95..211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FVF0
Preferred nameDYN1
PFAMsDynamin_M,Dynamin_N,GED
Model size117
Max annot lvl2759|Eukaryota
KEGG koko:K01528,ko:K17065
KEGG Pathwayko04072,ko04139,ko04144,ko04214,ko04217,ko04621,ko04668,ko04721,ko04961,ko05100,map04072,map04139,map04144,map04214,map04217,map04621,map04668,map04721,map04961,map05100
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0000266,GO:0000920,GO:0001882,GO:0001883,GO:0001891,GO:0003373,GO:0003374,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005522,GO:0005525,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005886,GO:0006508,GO:0006807,GO:0006810,GO:0006873,GO:0006885,GO:0006897,GO:0006907,GO:0006909,GO:0006996,GO:0006997,GO:0007005,GO:0007010,GO:0007015,GO:0007032,GO:0007163,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008289,GO:0009653,GO:0009987,GO:0010256,GO:0010467,GO:0015631,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016462,GO:0016485,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0030004,GO:0030029,GO:0030036,GO:0030139,GO:0030587,GO:0030641,GO:0031090,GO:0031288,GO:0031410,GO:0031966,GO:0031967,GO:0031975,GO:0031982,GO:0032153,GO:0032154,GO:0032155,GO:0032502,GO:0032535,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034622,GO:0035639,GO:0036094,GO:0042592,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044656,GO:0045335,GO:0045851,GO:0048285,GO:0048311,GO:0048312,GO:0048856,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051258,GO:0051301,GO:0051452,GO:0051453,GO:0051604,GO:0051640,GO:0051641,GO:0051646,GO:0051703,GO:0051704,GO:0055067,GO:0055080,GO:0055082,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0071944,GO:0090066,GO:0090148,GO:0090382,GO:0090383,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098590,GO:0098657,GO:0098771,GO:0099120,GO:1900756,GO:1901265,GO:1901363,GO:1901564
Exons1
Evalue1.35e-14
EggNOG OGsCOG0699@1|root,KOG0446@2759|Eukaryota
EC3.6.5.5
Descriptionmitochondrial fission
Cds size117
COG categoryI
BRITEko00000,ko00001,ko01000,ko03029,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186185.0715988-CDS-P-wetherbeei_contig19911:94..2111683186185.0715988-CDS-P-wetherbeei_contig19911:94..211Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19911 95..211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19911.1.1prot_P-wetherbeei_contig19911.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19911 95..211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19911.1.1

>prot_P-wetherbeei_contig19911.1.1 ID=prot_P-wetherbeei_contig19911.1.1|Name=mRNA_P-wetherbeei_contig19911.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=39bp
LTLLSKFATNFQAAVDGRGSSPDGIEMNELYGGARIRRV
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mRNA from alignment at P-wetherbeei_contig19911:95..211-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19911.1.1 ID=mRNA_P-wetherbeei_contig19911.1.1|Name=mRNA_P-wetherbeei_contig19911.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=117bp|location=Sequence derived from alignment at P-wetherbeei_contig19911:95..211- (Phaeothamnion wetherbeei SAG_119_79)
CTGACGCTGCTGAGCAAGTTTGCGACGAACTTCCAGGCAGCGGTGGATGG
CCGTGGGTCCTCTCCTGATGGCATCGAGATGAACGAGCTCTACGGCGGCG
CACGCATCAGGCGAGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19911:95..211-

>mRNA_P-wetherbeei_contig19911.1.1 ID=mRNA_P-wetherbeei_contig19911.1.1|Name=mRNA_P-wetherbeei_contig19911.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=117bp|location=Sequence derived from alignment at P-wetherbeei_contig19911:95..211- (Phaeothamnion wetherbeei SAG_119_79)
CTGACGCTGCTGAGCAAGTTTGCGACGAACTTCCAGGCAGCGGTGGATGG
CCGTGGGTCCTCTCCTGATGGCATCGAGATGAACGAGCTCTACGGCGGCG
CACGCATCAGGCGAGTC
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