mRNA_P-wetherbeei_contig19894.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19894.1.1
Unique NamemRNA_P-wetherbeei_contig19894.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19894.1.1 vs. uniprot
Match: A0A836C853_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C853_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.270e-7
Identity = 25/44 (56.82%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:  136 VSLMIVASLGVMLIGATMAGANDVTFNPLGYMWMTANCLSTAGY 267
            V+L+I+ASLGVM+ GA +AG +D+  N  GY+WM+ANC++TA Y
Sbjct:  128 VTLLILASLGVMVFGAALAGKDDMESNAWGYIWMSANCVTTASY 171
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BLAST of mRNA_P-wetherbeei_contig19894.1.1 vs. uniprot
Match: A0A7S2FDK8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FDK8_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 4.380e-6
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:  136 VSLMIVASLGVMLIGATMAGANDVTFNPLGYMWMTANCLSTAGY 267
            V++ +V S G+M++GA  A A DV F+P GY WM+ NC +TA Y
Sbjct:   31 VTIGVVFSFGIMVVGAVAAAATDVMFSPEGYFWMSMNCCATASY 74
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BLAST of mRNA_P-wetherbeei_contig19894.1.1 vs. uniprot
Match: A0A4D9DFY1_9STRA (EamA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DFY1_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 5.310e-6
Identity = 21/44 (47.73%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:  136 VSLMIVASLGVMLIGATMAGANDVTFNPLGYMWMTANCLSTAGY 267
            VSL  + +  +M++GA +A AND+TF+ +GY WM +NC+  AGY
Sbjct:  209 VSLGAILACAIMILGAVLAAANDITFSGIGYFWMLSNCVCCAGY 252
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BLAST of mRNA_P-wetherbeei_contig19894.1.1 vs. uniprot
Match: A0A5A8EF43_CAFRO (TPT domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EF43_CAFRO)

HSP 1 Score: 52.4 bits (124), Expect = 7.030e-6
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   91 IANGAFADFGGVLLPVSLMIVASLGVMLIGATMAGANDVTFNPLGYMWMTANCLSTAGY 267
            IA GA+  FG     V+L +  SLG++++GA +AGA D++F+  GY WM  NC+STA Y
Sbjct:  118 IAAGAWWWFGE---KVNLYVGLSLGMVVLGALLAGATDLSFDLEGYTWMAINCVSTAAY 173
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BLAST of mRNA_P-wetherbeei_contig19894.1.1 vs. uniprot
Match: A0A2R5FYK8_9STRA (GDP-mannose transporter n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FYK8_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.530e-5
Identity = 23/44 (52.27%), Postives = 28/44 (63.64%), Query Frame = 1 
Query:  136 VSLMIVASLGVMLIGATMAGANDVTFNPLGYMWMTANCLSTAGY 267
            VS  I  SLG+M +GA +AG +D+ FN LGY W   NC  TA Y
Sbjct:  173 VSQGIAGSLGLMFVGAVLAGRSDLEFNTLGYFWAACNCAITAAY 216
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19894.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836C853_9STRA1.270e-756.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2FDK8_9STRA4.380e-650.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A4D9DFY1_9STRA5.310e-647.73EamA domain-containing protein n=2 Tax=Monodopsida... [more]
A0A5A8EF43_CAFRO7.030e-647.46TPT domain-containing protein n=3 Tax=Cafeteria ro... [more]
A0A2R5FYK8_9STRA2.530e-552.27GDP-mannose transporter n=1 Tax=Hondaea fermentalg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19894contigP-wetherbeei_contig19894:328..942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LTL4
Preferred nameVRG4
PFAMsEamA,TPT,UAA
Model size268
Max annot lvl2759|Eukaryota
KEGG koko:K14835,ko:K15356
KEGG TC2.A.7.13
Hectar predicted targeting categorysignal peptide
GOsGO:0000139,GO:0000271,GO:0003674,GO:0005215,GO:0005338,GO:0005458,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005975,GO:0005976,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0006810,GO:0007163,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009272,GO:0009987,GO:0010383,GO:0012505,GO:0015780,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0016051,GO:0019538,GO:0022857,GO:0030447,GO:0030448,GO:0031090,GO:0031224,GO:0031984,GO:0033692,GO:0034637,GO:0034645,GO:0036080,GO:0036211,GO:0040007,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0051278,GO:0055085,GO:0070085,GO:0070589,GO:0070592,GO:0071554,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071852,GO:0071966,GO:0090480,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901264,GO:1901505,GO:1901564,GO:1901566,GO:1901576,GO:1990570
Exons2
Evalue1.24e-07
EggNOG OGsCOG5070@1|root,KOG1444@2759|Eukaryota
EC2.1.1.310
Descriptionnucleotide-sugar transmembrane transporter activity
Cds size123
COG categoryGOU
BRITEko00000,ko01000,ko02000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186184.3520627-CDS-P-wetherbeei_contig19894:327..4501683186184.3520627-CDS-P-wetherbeei_contig19894:327..450Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19894 328..450 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186184.3685462-UTR-P-wetherbeei_contig19894:450..4621683186184.3685462-UTR-P-wetherbeei_contig19894:450..462Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19894 451..462 -
1683186184.3780398-UTR-P-wetherbeei_contig19894:810..9421683186184.3780398-UTR-P-wetherbeei_contig19894:810..942Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19894 811..942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19894.1.1prot_P-wetherbeei_contig19894.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19894 328..450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19894.1.1

>prot_P-wetherbeei_contig19894.1.1 ID=prot_P-wetherbeei_contig19894.1.1|Name=mRNA_P-wetherbeei_contig19894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=41bp
MIVASLGVMLIGATMAGANDVTFNPLGYMWMTANCLSTAGY
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mRNA from alignment at P-wetherbeei_contig19894:328..942-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19894.1.1 ID=mRNA_P-wetherbeei_contig19894.1.1|Name=mRNA_P-wetherbeei_contig19894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=615bp|location=Sequence derived from alignment at P-wetherbeei_contig19894:328..942- (Phaeothamnion wetherbeei SAG_119_79)
GTCCGTTAATATCGGCAGTTGCTCTGTTGGACCAAGAATGAGTAACCTTG
GGTTGTTCCGTTGGGCCTGGGTCCCGGTGGTTATACCTTCATCGCCAATG
GGGCCTTCGCAGATTTTGGCGGTGTTCTTTTGGTTAAGTTGGGGCCCTGG
TCATGCTGCCACGCACACGCGGGTTAGTTGCAACGCTGGCGTTTTTTTGT
TAGAGAGCTTGCGGCCCGTATCGTCATCATCATCGTATTATCGTATCATC
GTGCTCCTATGCATTGTGGACTTTGAATCCATCGCCTGATACCCGCCATC
CACTGCTACATGATTTGTGACCTCTTATTCTTCTTCCTCTCGTGACCCAT
CCGTTCTCATCTTTACCATCAACCGCGGCTCCCAACTGCTTCGACACTGG
TACGCGGGATACCTGACGCATATGGAATGAACAATGTACACCATATTGCG
CGCCAAAACAACGCGTGGCGGAAATAACAGCCAGTGTCGCTGATGATTGT
GGCGAGCTTGGGGGTGATGCTCATAGGGGCGACCATGGCGGGTGCCAACG
ACGTCACCTTCAACCCTTTGGGCTACATGTGGATGACGGCAAATTGCCTC
AGCACAGCCGGCTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19894:328..942-

>mRNA_P-wetherbeei_contig19894.1.1 ID=mRNA_P-wetherbeei_contig19894.1.1|Name=mRNA_P-wetherbeei_contig19894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=123bp|location=Sequence derived from alignment at P-wetherbeei_contig19894:328..942- (Phaeothamnion wetherbeei SAG_119_79)
ATGATTGTGGCGAGCTTGGGGGTGATGCTCATAGGGGCGACCATGGCGGG
TGCCAACGACGTCACCTTCAACCCTTTGGGCTACATGTGGATGACGGCAA
ATTGCCTCAGCACAGCCGGCTAC
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