mRNA_P-wetherbeei_contig1987.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1987.6.1
Unique NamemRNA_P-wetherbeei_contig1987.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1987.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1987contigP-wetherbeei_contig1987:4946..6031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size750
Hectar predicted targeting categorymitochondrion
Exons2
Cds size453
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186183.7317617-CDS-P-wetherbeei_contig1987:4945..51661683186183.7317617-CDS-P-wetherbeei_contig1987:4945..5166Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1987 4946..5166 -
1683186183.7500818-CDS-P-wetherbeei_contig1987:5504..57361683186183.7500818-CDS-P-wetherbeei_contig1987:5504..5736Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1987 5505..5736 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186183.7590148-UTR-P-wetherbeei_contig1987:5736..60311683186183.7590148-UTR-P-wetherbeei_contig1987:5736..6031Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1987 5737..6031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1987.6.1prot_P-wetherbeei_contig1987.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1987 4946..5736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1987.6.1

>prot_P-wetherbeei_contig1987.6.1 ID=prot_P-wetherbeei_contig1987.6.1|Name=mRNA_P-wetherbeei_contig1987.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
MRLHTGRRVRRPAALRGHVRPQHLRRLPRLLARARRAGGRRLLQRRAAAA
GLPRHPRLQPRGGAAGALPGAELRRLAGPRVVSRLRGKLEPRTAHLRRHA
ATGSPARDAPQRRRHQPHRRAQPALPAPRGAVPRVDNVAATVAGAGSSDG
C
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mRNA from alignment at P-wetherbeei_contig1987:4946..6031-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1987.6.1 ID=mRNA_P-wetherbeei_contig1987.6.1|Name=mRNA_P-wetherbeei_contig1987.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1086bp|location=Sequence derived from alignment at P-wetherbeei_contig1987:4946..6031- (Phaeothamnion wetherbeei SAG_119_79)
CCTGTCTTTCAGCACGCTTTGCTGTCTGGGCTCTTGGGAAGAAGGCTTTT
TGTATGATCGGTTGCGCGAGCATGAAAGCCAGCCACCACGCGCTTTCTTG
TCCGTCTCTGCGGCCGCAGCAACCGCCTTCTTGACCTCCCGCCCTCTCAC
TGCCCTTATCTGCCTGCCTGCTGTCCCCTCACTCAATCGCCCGCCGCCCC
GTTAGCCCGCCGCCCCGTCCGTTGTCAATCTGCCCGCCGTCGGACCAAAC
CAACCTGATTTGGGTCAGAACTGGGACCAAAAACCAACCAATTTGATGCG
TCTGCACACAGGTCGAAGAGTGCGGCGTCCTGCTGCTCTACGAGGCCATG
TCCGCCCGCAACATCTGCGCCGTCTGCCTCGACTTCTCGCCCGAGCGCGG
CGAGCGGGCGGCCGCCGCCTTTTGCAGCGTCGTGCCGCTGCTGCGGGCCT
GCCCCGGCATCCTCGTCTTCAGCCCCGCGGCGGCGCTGCGGGCGCTCTTC
CTGGCGCGGAGCTGCGGCGACTCGCTGGTGCGTCTTTTTGTCGTTTTTGC
ATCTTTGCTGTTCCGACCGCCCCGCTCGCTCTCCCGCACCTCCTTGGAAA
ACCTTTTGTCATTATCTCAAGGAGCGCCATCATTTCGGTCACAGTTGTAA
TAAGGCGCTTCTACGGCCGACGCCGTCCCTTCCGCCCCCCAACAAAACAG
CTTTCTGCTTCGCTCGCTCCATCCCCACCAAGCTGTACCAAGTTTCGCTT
CCTCGTTCTCCCTCTTCTTTTTCCACCGCCGCCATGGCCTCTGCTGCAAT
CGCGCCTGCCGCCGCCTGTGTCTGCCGTCGTCTTCCGTGGCTGCCGCGGC
TGCCGTCGCACGCAGGACCGCGAGTCGTATCACGCCTTCGTGGAAAGCTG
GAGCCTCGCACGGCACATCTCAGGCGACACGCTGCCACCGGCAGTCCCGC
TCGAGACGCGCCGCAACGCCGTCGACATCAACCGCATCGTCGAGCTCAAC
CCGCTCTACCGGCGCCTCGCGGAGCGGTGCCTCGAGTGGACAATGTCGCC
GCCACCGTCGCCGGTGCTGGTAGCAGCGACGGCTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1987:4946..6031-

>mRNA_P-wetherbeei_contig1987.6.1 ID=mRNA_P-wetherbeei_contig1987.6.1|Name=mRNA_P-wetherbeei_contig1987.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig1987:4946..6031- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTCTGCACACAGGTCGAAGAGTGCGGCGTCCTGCTGCTCTACGAGG
CCATGTCCGCCCGCAACATCTGCGCCGTCTGCCTCGACTTCTCGCCCGAG
CGCGGCGAGCGGGCGGCCGCCGCCTTTTGCAGCGTCGTGCCGCTGCTGCG
GGCCTGCCCCGGCATCCTCGTCTTCAGCCCCGCGGCGGCGCTGCGGGCGC
TCTTCCTGGCGCGGAGCTGCGGCGACTCGCTGGACCGCGAGTCGTATCAC
GCCTTCGTGGAAAGCTGGAGCCTCGCACGGCACATCTCAGGCGACACGCT
GCCACCGGCAGTCCCGCTCGAGACGCGCCGCAACGCCGTCGACATCAACC
GCATCGTCGAGCTCAACCCGCTCTACCGGCGCCTCGCGGAGCGGTGCCTC
GAGTGGACAATGTCGCCGCCACCGTCGCCGGTGCTGGTAGCAGCGACGGC
TGC
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