mRNA_P-wetherbeei_contig1985.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1985.1.1
Unique NamemRNA_P-wetherbeei_contig1985.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1985.1.1 vs. uniprot
Match: D8LUA6_ECTSI (WW domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA6_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 5.810e-9
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 RPRSGLRSERRRLDRAPRGERLRRKRGHPLGGMTLLELEERHLL 132
            R R  L  ERRRLDR PR +RL + RGHPLGGMTLL+LEERHLL
Sbjct:  130 RTRLSLDRERRRLDRVPRSQRLSQVRGHPLGGMTLLQLEERHLL 173
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BLAST of mRNA_P-wetherbeei_contig1985.1.1 vs. uniprot
Match: A0A6H5J9P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9P3_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.800e-8
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 RPRSGLRSERRRLDRAPRGERLRRKRGHPLGGMTLLELEERHLL 132
            R R  L  ERRRLDR PR +RL + RGHPLGGMTLL+LEER+LL
Sbjct:  130 RTRLSLDRERRRLDRVPRSQRLSQVRGHPLGGMTLLQLEERYLL 173
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1985.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LUA6_ECTSI5.810e-972.73WW domain containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5J9P3_9PHAE3.800e-870.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1985contigP-wetherbeei_contig1985:457..588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size132
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186183.09618-CDS-P-wetherbeei_contig1985:456..5881683186183.09618-CDS-P-wetherbeei_contig1985:456..588Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1985 457..588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1985.1.1prot_P-wetherbeei_contig1985.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1985 457..588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1985.1.1

>prot_P-wetherbeei_contig1985.1.1 ID=prot_P-wetherbeei_contig1985.1.1|Name=mRNA_P-wetherbeei_contig1985.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=44bp
RPRSGLRSERRRLDRAPRGERLRRKRGHPLGGMTLLELEERHLL
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mRNA from alignment at P-wetherbeei_contig1985:457..588-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1985.1.1 ID=mRNA_P-wetherbeei_contig1985.1.1|Name=mRNA_P-wetherbeei_contig1985.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig1985:457..588- (Phaeothamnion wetherbeei SAG_119_79)
CGACCACGGTCAGGGCTTCGCAGTGAGCGCCGCCGTCTTGACCGTGCCCC
ACGAGGCGAGCGTCTACGACGAAAGCGCGGGCATCCTCTGGGCGGCATGA
CCTTGCTTGAGCTCGAAGAGCGTCACTTACTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1985:457..588-

>mRNA_P-wetherbeei_contig1985.1.1 ID=mRNA_P-wetherbeei_contig1985.1.1|Name=mRNA_P-wetherbeei_contig1985.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig1985:457..588- (Phaeothamnion wetherbeei SAG_119_79)
CGACCACGGTCAGGGCTTCGCAGTGAGCGCCGCCGTCTTGACCGTGCCCC
ACGAGGCGAGCGTCTACGACGAAAGCGCGGGCATCCTCTGGGCGGCATGA
CCTTGCTTGAGCTCGAAGAGCGTCACTTACTC
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