mRNA_P-wetherbeei_contig1981.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1981.5.1
Unique NamemRNA_P-wetherbeei_contig1981.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1981.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1981contigP-wetherbeei_contig1981:4175..5266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size675
Hectar predicted targeting categorysignal peptide
Exons3
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186181.9793906-UTR-P-wetherbeei_contig1981:4174..42041683186181.9793906-UTR-P-wetherbeei_contig1981:4174..4204Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1981 4175..4204 +
1683186182.0186539-UTR-P-wetherbeei_contig1981:4990..52661683186182.0186539-UTR-P-wetherbeei_contig1981:4990..5266Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1981 4991..5266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186181.9894652-CDS-P-wetherbeei_contig1981:4204..43751683186181.9894652-CDS-P-wetherbeei_contig1981:4204..4375Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1981 4205..4375 +
1683186181.9990735-CDS-P-wetherbeei_contig1981:4603..47191683186181.9990735-CDS-P-wetherbeei_contig1981:4603..4719Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1981 4604..4719 +
1683186182.008336-CDS-P-wetherbeei_contig1981:4908..49901683186182.008336-CDS-P-wetherbeei_contig1981:4908..4990Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1981 4909..4990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1981.5.1prot_P-wetherbeei_contig1981.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1981 4205..4990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1981.5.1

>prot_P-wetherbeei_contig1981.5.1 ID=prot_P-wetherbeei_contig1981.5.1|Name=mRNA_P-wetherbeei_contig1981.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
MQAHRKTCRRRAAKRSLRFRLALLLWGLGLQLSSSRATEGDNVREVEWLY
SMELERQERIKLEDANARDNGPKEISIYCETKPQVRISDLGREAVDAGGG
GAAIGGGGQLPTLEMNCEGMRP*
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mRNA from alignment at P-wetherbeei_contig1981:4175..5266+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1981.5.1 ID=mRNA_P-wetherbeei_contig1981.5.1|Name=mRNA_P-wetherbeei_contig1981.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1092bp|location=Sequence derived from alignment at P-wetherbeei_contig1981:4175..5266+ (Phaeothamnion wetherbeei SAG_119_79)
CGTGGGACGAGGGTACTAAAAGGCATTGCCATGCAGGCGCATCGGAAGAC
CTGCCGCCGACGCGCCGCGAAAAGATCGCTTCGCTTTCGATTGGCGCTCT
TGCTCTGGGGTCTTGGATTGCAACTCAGCTCGTCCAGAGCAACGGAGGGT
GACAACGTCCGAGAAGTGGAATGGCTGTACTCTATGGAGCTCGAGCGACA
GGTGAGCGCAGATATCACTTGCATCAAGGGTCACAATTAGGGTTGTACAC
TTCCTCGTTCTCTCACATTTTGCTTCACGCCATCGACTCGGTTGCTACGA
TGGAGTGCTAGTAGACATGAGAATGGCTGATGGTAGCAAAGGAAGCGTCA
AATACTTCCTTTTTAGAAAACTGAATGCCTGCCCCTTCCACCCTGCCCTT
TCCTTTCCTCCCGCCATTCGAAACACCAGGAGCGGATAAAGTTGGAGGAT
GCGAATGCACGAGACAATGGGCCGAAAGAAATCAGTATTTATTGCGAGAC
GAAGCCGCAAGTGCGGATTTCAGACCTCGGCCGAGAGGCTGTGGAGCGAG
ACGAGTGCTTGTAAGTGCATATTCCGTTTTGGCATTAACCAGATTTGCTC
TTCCCCTTTCACGTATCCGCTAGCCGCTTTATGCTATGGCAGAATATGAT
TTTTAGAACAATTCCTTTCTCTCTCGACGCTGCAGGGTGCTCAACTTCGA
CGGACCCGACATGAGCAGCAAATTGGTTCTTAAGTGCGGGGGGGGGGGGG
GCGGCGATAGGGGGGGGGGGGCAGCTTCCGACTTTAGAAATGAATTGTGA
GGGCATGCGGCCATGAACAGAATGGAGCCCTCCCAGTCAGGCGACTCCGG
GGCGTTCCCTCTCTAGTGCTGTGGATCTTTCTTCGGGAAGACCTGGTGCC
GCTATACGCGGTGGTGGACGTCAATAATTGCGTCGGGGATGCACTGATGG
TACGAAAGCAGCGAACCTGCACCCCGATTCGACGCAATCTTTGTCGTAGG
TGAGAAGAAAGAAGGCAAAATATGCTGCCTCCCTGGAAAGATTGAGTCCG
TGTGGTAATGTATCTACATGTCATGGATTTTAAACACATGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1981:4175..5266+

>mRNA_P-wetherbeei_contig1981.5.1 ID=mRNA_P-wetherbeei_contig1981.5.1|Name=mRNA_P-wetherbeei_contig1981.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig1981:4175..5266+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGCGCATCGGAAGACCTGCCGCCGACGCGCCGCGAAAAGATCGCT
TCGCTTTCGATTGGCGCTCTTGCTCTGGGGTCTTGGATTGCAACTCAGCT
CGTCCAGAGCAACGGAGGGTGACAACGTCCGAGAAGTGGAATGGCTGTAC
TCTATGGAGCTCGAGCGACAGGAGCGGATAAAGTTGGAGGATGCGAATGC
ACGAGACAATGGGCCGAAAGAAATCAGTATTTATTGCGAGACGAAGCCGC
AAGTGCGGATTTCAGACCTCGGCCGAGAGGCTGTGGATGCGGGGGGGGGG
GGGGCGGCGATAGGGGGGGGGGGGCAGCTTCCGACTTTAGAAATGAATTG
TGAGGGCATGCGGCCATGA
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