mRNA_P-wetherbeei_contig19786.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19786.1.1
Unique NamemRNA_P-wetherbeei_contig19786.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Match: A0A1F3A7V3_9PROT (MerR family transcriptional regulator n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1F3A7V3_9PROT)

HSP 1 Score: 229 bits (585), Expect = 1.500e-75
Identity = 120/128 (93.75%), Postives = 125/128 (97.66%), Query Frame = 1
Query:   58 IYSIAELAREFAVTSRTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRELLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGADPASD 441
            +YSIAELAREFAVT+RTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGF+LAEIK+LLDLY VDRTGLQQMRELLRRSRLHIE+LERRRADLDAQIGEFKDVE QVSAEL RRGADPASD
Sbjct:    1 MYSIAELAREFAVTARTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFSLAEIKQLLDLYQVDRTGLQQMRELLRRSRLHIEELERRRADLDAQIGEFKDVEAQVSAELVRRGADPASD 128          
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Match: UPI001E4FD9EE (MerR family DNA-binding transcriptional regulator n=2 Tax=Reyranella TaxID=445219 RepID=UPI001E4FD9EE)

HSP 1 Score: 226 bits (576), Expect = 6.630e-74
Identity = 115/147 (78.23%), Postives = 130/147 (88.44%), Query Frame = 1
Query:    1 MSVAVTPSGKSPAPRDTQRIYSIAELAREFAVTSRTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRELLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGADPASD 441
            M+VA  PSG+ P+PRD QRIYSIAEL+REFA+T RTIRFYEDEGLIKPRRQGT RLY+ GDR RL WILRGKRLGF+LAEI+ELLDLY VDRTG+QQ+RELLRRS+LHI DLER+RADLD  IGEF+ VE QVSAEL++RG DP SD
Sbjct:    1 MTVAAIPSGQMPSPRDPQRIYSIAELSREFAITPRTIRFYEDEGLIKPRRQGTMRLYTAGDRTRLSWILRGKRLGFSLAEIRELLDLYQVDRTGIQQLRELLRRSQLHIVDLERKRADLDQHIGEFRQVEAQVSAELKQRGVDPESD 147          
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Match: A0A1Q3KKC6_9PROT (HTH merR-type domain-containing protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1Q3KKC6_9PROT)

HSP 1 Score: 221 bits (564), Expect = 4.470e-72
Identity = 114/147 (77.55%), Postives = 128/147 (87.07%), Query Frame = 1
Query:    1 MSVAVTPSGKSPAPRDTQRIYSIAELAREFAVTSRTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRELLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGADPASD 441
            MSVA + S K   PRDTQRIYSIAEL+REFA+T RTIRFYEDEGLIKPRRQG  RLYSVGDR RLGWILRGKRLGF+LAEI+ELLDLY VDRTG+QQ+RELLRRS+LHI DLER+RADLD  I EF++VE+QVS EL++RG DP  D
Sbjct:    1 MSVAASSSAKGAVPRDTQRIYSIAELSREFAITPRTIRFYEDEGLIKPRRQGMTRLYSVGDRTRLGWILRGKRLGFSLAEIRELLDLYQVDRTGVQQLRELLRRSQLHIADLERKRADLDQHINEFREVESQVSTELRQRGVDPEGD 147          
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Match: A0A259MMT6_9PROT (HTH merR-type domain-containing protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MMT6_9PROT)

HSP 1 Score: 218 bits (555), Expect = 1.050e-70
Identity = 112/147 (76.19%), Postives = 128/147 (87.07%), Query Frame = 1
Query:    1 MSVAVTPSGKSPAPRDTQRIYSIAELAREFAVTSRTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRELLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGADPASD 441
            M+ A  PS K+PA RD+QRIYSIAEL+REFA+T RTIRFYEDEGLIKPRR GT RLY+VGDR RL WILRGKRLGF+LAEI+ELLDLY VDRTG+QQ+RELLRR +LHI DLER+RADLD  IGEF++V  QVSAEL++RG DP SD
Sbjct:    1 MTAAALPSAKTPALRDSQRIYSIAELSREFAITPRTIRFYEDEGLIKPRRHGTTRLYTVGDRTRLSWILRGKRLGFSLAEIRELLDLYQVDRTGMQQLRELLRRCQLHIGDLERKRADLDQHIGEFREVAAQVSAELKQRGIDPESD 147          
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Match: A0A1H8YFU9_9PROT (DNA-binding transcriptional regulator, MerR family n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1H8YFU9_9PROT)

HSP 1 Score: 216 bits (549), Expect = 9.510e-70
Identity = 115/150 (76.67%), Postives = 128/150 (85.33%), Query Frame = 1
Query:    1 MSVAVTPSG---KSPAPRDTQRIYSIAELAREFAVTSRTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRELLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGADPASD 441
            M VA  P+    KS A RD+QRIYSIAEL+REFA+T RTIRFYEDEGLIKPRRQG  RLYS GDR RLGWILRGKRLGF LAEI+ELLDLY VDRTGLQQ+RELLRRSRLHI DLE++R DLDA I EFK+VE+QVSAEL++RG DP +D
Sbjct:    1 MPVAAPPAASTAKSSALRDSQRIYSIAELSREFAITPRTIRFYEDEGLIKPRRQGLTRLYSAGDRTRLGWILRGKRLGFALAEIRELLDLYQVDRTGLQQLRELLRRSRLHITDLEKKRRDLDAHISEFKEVESQVSAELRQRGVDPEND 150          
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Match: A0A1T4RYL5_9HYPH (DNA-binding transcriptional regulator, MerR family n=1 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4RYL5_9HYPH)

HSP 1 Score: 209 bits (532), Expect = 3.130e-67
Identity = 112/147 (76.19%), Postives = 125/147 (85.03%), Query Frame = 1
Query:    1 MSVAVTPSGKSPAPRDTQRIYSIAELAREFAVTSRTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRELLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGADPASD 441
            MSVA   S ++   RD QRIYSIAELAREF +T+RTIRFYEDEGLIKPRRQG  RLYS GDR RLGWILRGKRLGF+LAEIKELLDLY VDRTG+QQ+RELLRRSRLHIEDLERRR DLDA I EF++VE+Q + EL++RG D A D
Sbjct:    1 MSVAAPASTQTQ--RDLQRIYSIAELAREFGITARTIRFYEDEGLIKPRRQGLTRLYSAGDRTRLGWILRGKRLGFSLAEIKELLDLYQVDRTGVQQLRELLRRSRLHIEDLERRRRDLDAHIQEFREVESQAATELRKRGIDLAKD 145          
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Match: A0A537MWQ0_9PROT (MerR family DNA-binding transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537MWQ0_9PROT)

HSP 1 Score: 209 bits (532), Expect = 3.350e-67
Identity = 110/138 (79.71%), Postives = 122/138 (88.41%), Query Frame = 1
Query:   28 KSPAPRDTQRIYSIAELAREFAVTSRTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRELLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGADPASD 441
            KSP PRD+ RIYSIAELAREFA+T+RTIRFYEDEGLIKPRRQG  RLYS  DR RL WILRGKRLGF+LAEIKELLDLY VDRTGLQQ+RELLRRSRLHI DLER+R DLDA I EF++VE QV+AEL++RG DP +D
Sbjct:   11 KSP-PRDSARIYSIAELAREFAITARTIRFYEDEGLIKPRRQGLTRLYSAHDRVRLSWILRGKRLGFSLAEIKELLDLYQVDRTGLQQLRELLRRSRLHITDLERKRRDLDAHITEFREVEAQVAAELKQRGVDPEND 147          
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Match: A0A5C8PI04_9HYPH (MerR family DNA-binding transcriptional regulator n=1 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PI04_9HYPH)

HSP 1 Score: 162 bits (411), Expect = 8.890e-49
Identity = 81/129 (62.79%), Postives = 104/129 (80.62%), Query Frame = 1
Query:   55 RIYSIAELAREFAVTSRTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRELLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGADPASD 441
            R ++IAELA+EF VT+R IRFYEDEGLI P RQGT R+YS GDRARLGW+LRGKRLGF+L EI++LL+LYH D +G+QQ+R +L +SR HI +LE+R  DL AQ+ EF++VE Q  A L+ +G DP S+
Sbjct:   18 RTWTIAELAKEFGVTARAIRFYEDEGLIAPERQGTTRVYSAGDRARLGWVLRGKRLGFSLGEIRDLLNLYHSDHSGVQQIRGVLHKSREHIAELEKRLRDLRAQLAEFREVEAQAEAFLRGKGVDPDSE 146          
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Match: A0A5C5TA32_9HYPH (MerR family DNA-binding transcriptional regulator n=1 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5TA32_9HYPH)

HSP 1 Score: 156 bits (394), Expect = 3.200e-46
Identity = 80/125 (64.00%), Postives = 97/125 (77.60%), Query Frame = 1
Query:   55 RIYSIAELAREFAVTSRTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRELLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGAD 429
            R ++IAELA+EF VT R IRFYEDE LI P RQGT R+YS GDRARLGWILRGKRLGF+L EIKELL+LYH DR+G+QQ+R +LR+SR HI +LE+R  DL  Q+ EF++VE      L  +G D
Sbjct:   18 RTWTIAELAKEFGVTPRAIRFYEDEDLIAPARQGTSRIYSAGDRARLGWILRGKRLGFSLGEIKELLNLYHSDRSGVQQIRGVLRKSREHIAELEKRLRDLRTQLAEFREVEAHAMEFLHDKGVD 142          
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Match: UPI0015D47920 (MerR family DNA-binding transcriptional regulator n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI0015D47920)

HSP 1 Score: 134 bits (337), Expect = 1.060e-37
Identity = 70/125 (56.00%), Postives = 90/125 (72.00%), Query Frame = 1
Query:   58 IYSIAELAREFAVTSRTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRELLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGADP 432
            +Y++ +LA E  VT RT+RFYED+GL+ P RQG  R+Y   DRAR+  ILRGKRLGF+LAEI E LDLY +D  G++Q+R LLRR R   + LER+R DL+A + E  D+E QV+A L  RGA P
Sbjct:    4 LYTVNQLAEELGVTPRTLRFYEDKGLLSPNRQGNNRVYDKRDRARMKLILRGKRLGFSLAEIAEYLDLYKIDGNGIEQLRVLLRRVRERRDVLERQREDLEATVAELADIEDQVAAALAERGAAP 128          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F3A7V3_9PROT1.500e-7593.75MerR family transcriptional regulator n=2 Tax=Alph... [more]
UPI001E4FD9EE6.630e-7478.23MerR family DNA-binding transcriptional regulator ... [more]
A0A1Q3KKC6_9PROT4.470e-7277.55HTH merR-type domain-containing protein n=3 Tax=Al... [more]
A0A259MMT6_9PROT1.050e-7076.19HTH merR-type domain-containing protein n=3 Tax=Al... [more]
A0A1H8YFU9_9PROT9.510e-7076.67DNA-binding transcriptional regulator, MerR family... [more]
A0A1T4RYL5_9HYPH3.130e-6776.19DNA-binding transcriptional regulator, MerR family... [more]
A0A537MWQ0_9PROT3.350e-6779.71MerR family DNA-binding transcriptional regulator ... [more]
A0A5C8PI04_9HYPH8.890e-4962.79MerR family DNA-binding transcriptional regulator ... [more]
A0A5C5TA32_9HYPH3.200e-4664.00MerR family DNA-binding transcriptional regulator ... [more]
UPI0015D479201.060e-3756.00MerR family DNA-binding transcriptional regulator ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19786contigP-wetherbeei_contig19786:178..621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1205680.CAKO01000004_gene3668
PFAMsMerR,MerR-DNA-bind,MerR_1
Model size444
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.93e-74
EggNOG OGsCOG0789@1|root,COG0789@2|Bacteria,1RITY@1224|Proteobacteria,2U98M@28211|Alphaproteobacteria,2JT2N@204441|Rhodospirillales
DescriptionTranscriptional regulators
Cds size444
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186181.2928874-CDS-P-wetherbeei_contig19786:177..6211683186181.2928874-CDS-P-wetherbeei_contig19786:177..621Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19786 178..621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19786.1.1prot_P-wetherbeei_contig19786.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19786 178..621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19786.1.1

>prot_P-wetherbeei_contig19786.1.1 ID=prot_P-wetherbeei_contig19786.1.1|Name=mRNA_P-wetherbeei_contig19786.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
MSVAVTPSGKSPAPRDTQRIYSIAELAREFAVTSRTIRFYEDEGLIKPRR
QGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRE
LLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGADPASD*
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mRNA from alignment at P-wetherbeei_contig19786:178..621+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19786.1.1 ID=mRNA_P-wetherbeei_contig19786.1.1|Name=mRNA_P-wetherbeei_contig19786.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig19786:178..621+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCGTCGCCGTCACCCCATCGGGCAAGAGCCCGGCGCCGCGCGACAC GCAGCGCATCTATAGCATCGCCGAACTGGCGCGCGAGTTCGCGGTGACGT CGCGCACCATCCGCTTCTACGAGGACGAGGGGCTGATCAAGCCGCGCCGC CAGGGCACGCAGCGGCTCTACAGCGTCGGCGACCGCGCGCGGCTGGGCTG GATTCTCCGCGGCAAGCGACTGGGCTTCACCCTGGCCGAGATCAAGGAAC TGCTCGACCTCTATCATGTCGATCGCACCGGCCTGCAGCAGATGCGCGAG TTGCTGCGCCGCAGCCGGCTGCATATTGAAGACCTCGAACGCCGGCGGGC CGATCTCGACGCCCAGATCGGCGAATTCAAGGATGTCGAGACCCAGGTGT CCGCTGAACTGCAGCGGCGCGGCGCCGACCCGGCTAGCGACTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19786:178..621+

>mRNA_P-wetherbeei_contig19786.1.1 ID=mRNA_P-wetherbeei_contig19786.1.1|Name=mRNA_P-wetherbeei_contig19786.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig19786:178..621+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCGTCGCCGTCACCCCATCGGGCAAGAGCCCGGCGCCGCGCGACAC
GCAGCGCATCTATAGCATCGCCGAACTGGCGCGCGAGTTCGCGGTGACGT
CGCGCACCATCCGCTTCTACGAGGACGAGGGGCTGATCAAGCCGCGCCGC
CAGGGCACGCAGCGGCTCTACAGCGTCGGCGACCGCGCGCGGCTGGGCTG
GATTCTCCGCGGCAAGCGACTGGGCTTCACCCTGGCCGAGATCAAGGAAC
TGCTCGACCTCTATCATGTCGATCGCACCGGCCTGCAGCAGATGCGCGAG
TTGCTGCGCCGCAGCCGGCTGCATATTGAAGACCTCGAACGCCGGCGGGC
CGATCTCGACGCCCAGATCGGCGAATTCAAGGATGTCGAGACCCAGGTGT
CCGCTGAACTGCAGCGGCGCGGCGCCGACCCGGCTAGCGACTAA
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