mRNA_P-wetherbeei_contig19786.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Match: A0A1F3A7V3_9PROT (MerR family transcriptional regulator n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1F3A7V3_9PROT) HSP 1 Score: 229 bits (585), Expect = 1.500e-75 Identity = 120/128 (93.75%), Postives = 125/128 (97.66%), Query Frame = 1
Query: 58 IYSIAELAREFAVTSRTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRELLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGADPASD 441
+YSIAELAREFAVT+RTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGF+LAEIK+LLDLY VDRTGLQQMRELLRRSRLHIE+LERRRADLDAQIGEFKDVE QVSAEL RRGADPASD
Sbjct: 1 MYSIAELAREFAVTARTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFSLAEIKQLLDLYQVDRTGLQQMRELLRRSRLHIEELERRRADLDAQIGEFKDVEAQVSAELVRRGADPASD 128
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Match: UPI001E4FD9EE (MerR family DNA-binding transcriptional regulator n=2 Tax=Reyranella TaxID=445219 RepID=UPI001E4FD9EE) HSP 1 Score: 226 bits (576), Expect = 6.630e-74 Identity = 115/147 (78.23%), Postives = 130/147 (88.44%), Query Frame = 1
Query: 1 MSVAVTPSGKSPAPRDTQRIYSIAELAREFAVTSRTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRELLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGADPASD 441
M+VA PSG+ P+PRD QRIYSIAEL+REFA+T RTIRFYEDEGLIKPRRQGT RLY+ GDR RL WILRGKRLGF+LAEI+ELLDLY VDRTG+QQ+RELLRRS+LHI DLER+RADLD IGEF+ VE QVSAEL++RG DP SD
Sbjct: 1 MTVAAIPSGQMPSPRDPQRIYSIAELSREFAITPRTIRFYEDEGLIKPRRQGTMRLYTAGDRTRLSWILRGKRLGFSLAEIRELLDLYQVDRTGIQQLRELLRRSQLHIVDLERKRADLDQHIGEFRQVEAQVSAELKQRGVDPESD 147
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Match: A0A1Q3KKC6_9PROT (HTH merR-type domain-containing protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1Q3KKC6_9PROT) HSP 1 Score: 221 bits (564), Expect = 4.470e-72 Identity = 114/147 (77.55%), Postives = 128/147 (87.07%), Query Frame = 1
Query: 1 MSVAVTPSGKSPAPRDTQRIYSIAELAREFAVTSRTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRELLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGADPASD 441
MSVA + S K PRDTQRIYSIAEL+REFA+T RTIRFYEDEGLIKPRRQG RLYSVGDR RLGWILRGKRLGF+LAEI+ELLDLY VDRTG+QQ+RELLRRS+LHI DLER+RADLD I EF++VE+QVS EL++RG DP D
Sbjct: 1 MSVAASSSAKGAVPRDTQRIYSIAELSREFAITPRTIRFYEDEGLIKPRRQGMTRLYSVGDRTRLGWILRGKRLGFSLAEIRELLDLYQVDRTGVQQLRELLRRSQLHIADLERKRADLDQHINEFREVESQVSTELRQRGVDPEGD 147
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Match: A0A259MMT6_9PROT (HTH merR-type domain-containing protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MMT6_9PROT) HSP 1 Score: 218 bits (555), Expect = 1.050e-70 Identity = 112/147 (76.19%), Postives = 128/147 (87.07%), Query Frame = 1
Query: 1 MSVAVTPSGKSPAPRDTQRIYSIAELAREFAVTSRTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRELLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGADPASD 441
M+ A PS K+PA RD+QRIYSIAEL+REFA+T RTIRFYEDEGLIKPRR GT RLY+VGDR RL WILRGKRLGF+LAEI+ELLDLY VDRTG+QQ+RELLRR +LHI DLER+RADLD IGEF++V QVSAEL++RG DP SD
Sbjct: 1 MTAAALPSAKTPALRDSQRIYSIAELSREFAITPRTIRFYEDEGLIKPRRHGTTRLYTVGDRTRLSWILRGKRLGFSLAEIRELLDLYQVDRTGMQQLRELLRRCQLHIGDLERKRADLDQHIGEFREVAAQVSAELKQRGIDPESD 147
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Match: A0A1H8YFU9_9PROT (DNA-binding transcriptional regulator, MerR family n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1H8YFU9_9PROT) HSP 1 Score: 216 bits (549), Expect = 9.510e-70 Identity = 115/150 (76.67%), Postives = 128/150 (85.33%), Query Frame = 1
Query: 1 MSVAVTPSG---KSPAPRDTQRIYSIAELAREFAVTSRTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRELLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGADPASD 441
M VA P+ KS A RD+QRIYSIAEL+REFA+T RTIRFYEDEGLIKPRRQG RLYS GDR RLGWILRGKRLGF LAEI+ELLDLY VDRTGLQQ+RELLRRSRLHI DLE++R DLDA I EFK+VE+QVSAEL++RG DP +D
Sbjct: 1 MPVAAPPAASTAKSSALRDSQRIYSIAELSREFAITPRTIRFYEDEGLIKPRRQGLTRLYSAGDRTRLGWILRGKRLGFALAEIRELLDLYQVDRTGLQQLRELLRRSRLHITDLEKKRRDLDAHISEFKEVESQVSAELRQRGVDPEND 150
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Match: A0A1T4RYL5_9HYPH (DNA-binding transcriptional regulator, MerR family n=1 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4RYL5_9HYPH) HSP 1 Score: 209 bits (532), Expect = 3.130e-67 Identity = 112/147 (76.19%), Postives = 125/147 (85.03%), Query Frame = 1
Query: 1 MSVAVTPSGKSPAPRDTQRIYSIAELAREFAVTSRTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRELLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGADPASD 441
MSVA S ++ RD QRIYSIAELAREF +T+RTIRFYEDEGLIKPRRQG RLYS GDR RLGWILRGKRLGF+LAEIKELLDLY VDRTG+QQ+RELLRRSRLHIEDLERRR DLDA I EF++VE+Q + EL++RG D A D
Sbjct: 1 MSVAAPASTQTQ--RDLQRIYSIAELAREFGITARTIRFYEDEGLIKPRRQGLTRLYSAGDRTRLGWILRGKRLGFSLAEIKELLDLYQVDRTGVQQLRELLRRSRLHIEDLERRRRDLDAHIQEFREVESQAATELRKRGIDLAKD 145
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Match: A0A537MWQ0_9PROT (MerR family DNA-binding transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537MWQ0_9PROT) HSP 1 Score: 209 bits (532), Expect = 3.350e-67 Identity = 110/138 (79.71%), Postives = 122/138 (88.41%), Query Frame = 1
Query: 28 KSPAPRDTQRIYSIAELAREFAVTSRTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRELLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGADPASD 441
KSP PRD+ RIYSIAELAREFA+T+RTIRFYEDEGLIKPRRQG RLYS DR RL WILRGKRLGF+LAEIKELLDLY VDRTGLQQ+RELLRRSRLHI DLER+R DLDA I EF++VE QV+AEL++RG DP +D
Sbjct: 11 KSP-PRDSARIYSIAELAREFAITARTIRFYEDEGLIKPRRQGLTRLYSAHDRVRLSWILRGKRLGFSLAEIKELLDLYQVDRTGLQQLRELLRRSRLHITDLERKRRDLDAHITEFREVEAQVAAELKQRGVDPEND 147
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Match: A0A5C8PI04_9HYPH (MerR family DNA-binding transcriptional regulator n=1 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PI04_9HYPH) HSP 1 Score: 162 bits (411), Expect = 8.890e-49 Identity = 81/129 (62.79%), Postives = 104/129 (80.62%), Query Frame = 1
Query: 55 RIYSIAELAREFAVTSRTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRELLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGADPASD 441
R ++IAELA+EF VT+R IRFYEDEGLI P RQGT R+YS GDRARLGW+LRGKRLGF+L EI++LL+LYH D +G+QQ+R +L +SR HI +LE+R DL AQ+ EF++VE Q A L+ +G DP S+
Sbjct: 18 RTWTIAELAKEFGVTARAIRFYEDEGLIAPERQGTTRVYSAGDRARLGWVLRGKRLGFSLGEIRDLLNLYHSDHSGVQQIRGVLHKSREHIAELEKRLRDLRAQLAEFREVEAQAEAFLRGKGVDPDSE 146
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Match: A0A5C5TA32_9HYPH (MerR family DNA-binding transcriptional regulator n=1 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5TA32_9HYPH) HSP 1 Score: 156 bits (394), Expect = 3.200e-46 Identity = 80/125 (64.00%), Postives = 97/125 (77.60%), Query Frame = 1
Query: 55 RIYSIAELAREFAVTSRTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRELLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGAD 429
R ++IAELA+EF VT R IRFYEDE LI P RQGT R+YS GDRARLGWILRGKRLGF+L EIKELL+LYH DR+G+QQ+R +LR+SR HI +LE+R DL Q+ EF++VE L +G D
Sbjct: 18 RTWTIAELAKEFGVTPRAIRFYEDEDLIAPARQGTSRIYSAGDRARLGWILRGKRLGFSLGEIKELLNLYHSDRSGVQQIRGVLRKSREHIAELEKRLRDLRTQLAEFREVEAHAMEFLHDKGVD 142
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Match: UPI0015D47920 (MerR family DNA-binding transcriptional regulator n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI0015D47920) HSP 1 Score: 134 bits (337), Expect = 1.060e-37 Identity = 70/125 (56.00%), Postives = 90/125 (72.00%), Query Frame = 1
Query: 58 IYSIAELAREFAVTSRTIRFYEDEGLIKPRRQGTQRLYSVGDRARLGWILRGKRLGFTLAEIKELLDLYHVDRTGLQQMRELLRRSRLHIEDLERRRADLDAQIGEFKDVETQVSAELQRRGADP 432
+Y++ +LA E VT RT+RFYED+GL+ P RQG R+Y DRAR+ ILRGKRLGF+LAEI E LDLY +D G++Q+R LLRR R + LER+R DL+A + E D+E QV+A L RGA P
Sbjct: 4 LYTVNQLAEELGVTPRTLRFYEDKGLLSPNRQGNNRVYDKRDRARMKLILRGKRLGFSLAEIAEYLDLYKIDGNGIEQLRVLLRRVRERRDVLERQREDLEATVAELADIEDQVAAALAERGAAP 128 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19786.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig19786.1.1 >prot_P-wetherbeei_contig19786.1.1 ID=prot_P-wetherbeei_contig19786.1.1|Name=mRNA_P-wetherbeei_contig19786.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp MSVAVTPSGKSPAPRDTQRIYSIAELAREFAVTSRTIRFYEDEGLIKPRRback to top mRNA from alignment at P-wetherbeei_contig19786:178..621+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig19786.1.1 ID=mRNA_P-wetherbeei_contig19786.1.1|Name=mRNA_P-wetherbeei_contig19786.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig19786:178..621+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig19786:178..621+ >mRNA_P-wetherbeei_contig19786.1.1 ID=mRNA_P-wetherbeei_contig19786.1.1|Name=mRNA_P-wetherbeei_contig19786.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig19786:178..621+ (Phaeothamnion wetherbeei SAG_119_79)back to top |