mRNA_P-wetherbeei_contig1975.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1975.2.1
Unique NamemRNA_P-wetherbeei_contig1975.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1975.2.1 vs. uniprot
Match: A0A2E6LS79_9GAMM (Fe2OG dioxygenase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E6LS79_9GAMM)

HSP 1 Score: 73.2 bits (178), Expect = 4.510e-13
Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = 1
Query:   52 EGVPVIDIGSIIDPATHTREAKEAAAAAIAKAAQGWGFFIVINHGVQSSLIARLRAASAAFFALPPACKDAVRRTATNYYGYFNDEFTKQVR 327
            +GVP IDI  + +PAT          AAI +A + WGFF V+NHG+ + +   L+AA  AFF  P   K  + RTA N++G+++ E TK  R
Sbjct:    3 QGVPTIDIAELDNPATR---------AAIDRACRDWGFFQVVNHGIDAGVTGDLQAAMRAFFQRPAVDKQRIARTADNHWGFYDRELTKNTR 85          
BLAST of mRNA_P-wetherbeei_contig1975.2.1 vs. uniprot
Match: A0A314UG38_PRUYE (Isopenicillin N synthase n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314UG38_PRUYE)

HSP 1 Score: 73.6 bits (179), Expect = 5.630e-13
Identity = 43/93 (46.24%), Postives = 55/93 (59.14%), Query Frame = 1
Query:   52 EGVPVIDIGSIIDPATHTR-EAKEAAAAAIAKAAQGWGFFIVINHGVQSSLIARLRAASAAFFALPPACKDAVRRTATNYYGYFNDEFTKQVR 327
            EG+P+ID+  II P + T  +A E     I  A +GWGFF VINHGVQ   +  + AA+  FFALP   K  +RR   +  GYF+ E TK VR
Sbjct:  287 EGIPLIDLSPIISPDSITDPKAIEGVVREIGSACKGWGFFQVINHGVQLDKLRNIEAAARKFFALPLEEKRKIRRDEKSVLGYFDCERTKNVR 379          
BLAST of mRNA_P-wetherbeei_contig1975.2.1 vs. uniprot
Match: A0A6P6FYK1_ZIZJJ (protein DMR6-LIKE OXYGENASE 2-like isoform X1 n=1 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P6FYK1_ZIZJJ)

HSP 1 Score: 72.8 bits (177), Expect = 7.800e-13
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 1
Query:   52 EGVPVIDIGSIID---PATHTREAKEAAAAAIAKAAQGWGFFIVINHGVQSSLIARLRAASAAFFALPPACKDAVRRTATNYYGYFNDEFTKQVR 327
            EG+P+ID+   I    P T  + A+E     +  A + WGFF VINHGV +  + +L +A   FF+LP   K  VRR  TN+ GY+  EFTK VR
Sbjct:   30 EGIPLIDLSGAISNSSPETLKKVARE-----VGNACKEWGFFQVINHGVPAETLKKLESARNKFFSLPLEEKRKVRRAETNFLGYYEHEFTKNVR 119          
BLAST of mRNA_P-wetherbeei_contig1975.2.1 vs. uniprot
Match: A0A7S3BFF2_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BFF2_9VIRI)

HSP 1 Score: 72.0 bits (175), Expect = 1.150e-12
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1
Query:   94 ATHTREAKEAAAAAIAKAAQGWGFFIVINHGVQSSLIARLRAASAAFFALPPACKDAVRRTATNYYGYFNDEFTKQ 321
            AT+T EA++ A A +A A + WGF+ V+NHGV  ++ AR  AA   FFALP   K  V+RTA N  G+F+DE TKQ
Sbjct:   12 ATNT-EARDRAVAEVATALENWGFYSVVNHGVDEAVAARFEAAQREFFALPKEEKRRVKRTADNSRGWFDDELTKQ 86          
BLAST of mRNA_P-wetherbeei_contig1975.2.1 vs. uniprot
Match: A0A2E4XZH3_9PROT (Fe2OG dioxygenase domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4XZH3_9PROT)

HSP 1 Score: 72.4 bits (176), Expect = 1.150e-12
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   31 AKISAILEGVPVIDIGS---IIDPATHTREAKEAAAAAIAKAAQGWGFFIVINHGVQSSLIARLRAASAAFFALPPACKDAVRRTATNYYGYFNDEFTKQVR 327
            A  +A+ + VP+ID+G    +  PAT  R A E     I  A + WGFF ++NHGV S  +A + +   AFFALP A K A+ R++ N +GYF+ E TK  R
Sbjct:   39 ADANAVRQSVPIIDLGGAEGMDHPATAARVAGE-----IGDACRDWGFFQIVNHGVDSDHLAHVWSTIRAFFALPRADKRALNRSSENPWGYFDRELTKNQR 135          
BLAST of mRNA_P-wetherbeei_contig1975.2.1 vs. uniprot
Match: A0A068TTP7_COFCA (Fe2OG dioxygenase domain-containing protein n=4 Tax=Coffea TaxID=13442 RepID=A0A068TTP7_COFCA)

HSP 1 Score: 69.3 bits (168), Expect = 1.380e-11
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 1
Query:   49 LEGVPVIDIGSIIDPATHTREAKEAAAAA-IAKAAQGWGFFIVINHGVQSSLIARLRAASAAFFALPPACKDAVRRTATNYYGYFNDEFTKQVR 327
            +EG+P+ID+  +  P +   +   A   + IA A+Q WGFF VINHGVQS    +   AS  FFALP   K  V+R   N +GY++ E TK VR
Sbjct:   25 VEGIPLIDLSVLNSPDSSVSDDNLARLVSEIADASQKWGFFQVINHGVQSEYREKFFLASRKFFALPKEEKLKVKRDEVNPFGYYDTELTKNVR 118          
BLAST of mRNA_P-wetherbeei_contig1975.2.1 vs. uniprot
Match: M5W5K6_PRUPE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Prunus persica TaxID=3760 RepID=M5W5K6_PRUPE)

HSP 1 Score: 68.2 bits (165), Expect = 2.570e-11
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 1
Query:   52 EGVPVIDIGSIIDPATHTR-EAKEAAAAAIAKAAQGWGFFIVINHGVQSSLIARLRAASAAFFALPPACKDAVRRTATNYYGYFNDEFTKQVR 327
            EG+P+ID+  I  P + T  +A E     I  A +GWGFF VINHGVQ   +  +  A+  FFALP   K  +RR   +  GY++ E TK VR
Sbjct:   24 EGIPLIDLSPINSPDSITDPKAIEGVVREIGSACKGWGFFQVINHGVQLDKLRNIETAARKFFALPLEEKRKIRRDEKSVLGYYDCERTKNVR 116          
BLAST of mRNA_P-wetherbeei_contig1975.2.1 vs. uniprot
Match: A0A6J5YAV7_PRUAR (Fe2OG dioxygenase domain-containing protein n=6 Tax=Prunus TaxID=3754 RepID=A0A6J5YAV7_PRUAR)

HSP 1 Score: 68.2 bits (165), Expect = 3.560e-11
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 1
Query:   52 EGVPVIDIGSIIDPATHTR-EAKEAAAAAIAKAAQGWGFFIVINHGVQSSLIARLRAASAAFFALPPACKDAVRRTATNYYGYFNDEFTKQVR 327
            EG+P+ID+  I  P + T  +A E     I  A +GWGFF VINHGVQ   +  +  A+  FFALP   K  +RR   +  GY++ E TK VR
Sbjct:   24 EGIPLIDLSPINSPDSITDPKAIEGVVREIGSACKGWGFFQVINHGVQLDKLRNIETAARKFFALPLEEKRKIRRDEKSVLGYYDCERTKNVR 116          
BLAST of mRNA_P-wetherbeei_contig1975.2.1 vs. uniprot
Match: R1B422_EMIHU (Fe2OG dioxygenase domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1B422_EMIHU)

HSP 1 Score: 67.4 bits (163), Expect = 7.670e-11
Identity = 38/98 (38.78%), Postives = 52/98 (53.06%), Query Frame = 1
Query:   34 KISAILEGVPVIDIGSIIDPATHTREAKEAAAAAIAKAAQGWGFFIVINHGVQSSLIARLRAASAAFFALPPACKDAVRRTATNYYGYFNDEFTKQVR 327
            + S+     PVID+  + D    +          +A A + WGFF V++HGV   L AR      AFFALP   K+ +RR+A N  G++NDE TKQ R
Sbjct:   29 RFSSAARAPPVIDLSPLRDGGLSS---SSPLVREVADACEQWGFFQVVDHGVDEDLCARAEEQQRAFFALPMEVKECMRRSADNSRGWYNDELTKQRR 123          
BLAST of mRNA_P-wetherbeei_contig1975.2.1 vs. uniprot
Match: A0A834ZM60_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834ZM60_9MAGN)

HSP 1 Score: 67.0 bits (162), Expect = 1.140e-10
Identity = 41/91 (45.05%), Postives = 49/91 (53.85%), Query Frame = 1
Query:   58 VPVIDIGSIIDPATHTR-EAKEAAAAAIAKAAQGWGFFIVINHGVQSSLIARLRAASAAFFALPPACKDAVRRTATNYYGYFNDEFTKQVR 327
            +P+ID+  + DP T     A     A I  A + WGFF VINHGV S L+  L  A   FF LP   K  VRR   N  GYF+ E+TK VR
Sbjct:  104 IPLIDLSLLNDPDTSDDPRALAGLVAEIGDACKNWGFFQVINHGVPSDLLRELLKAGKKFFDLPLEKKRKVRRDEENPLGYFDTEYTKNVR 194          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1975.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E6LS79_9GAMM4.510e-1341.30Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A314UG38_PRUYE5.630e-1346.24Isopenicillin N synthase n=1 Tax=Prunus yedoensis ... [more]
A0A6P6FYK1_ZIZJJ7.800e-1343.16protein DMR6-LIKE OXYGENASE 2-like isoform X1 n=1 ... [more]
A0A7S3BFF2_9VIRI1.150e-1251.32Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A2E4XZH3_9PROT1.150e-1242.16Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A068TTP7_COFCA1.380e-1143.62Fe2OG dioxygenase domain-containing protein n=4 Ta... [more]
M5W5K6_PRUPE2.570e-1143.01Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A6J5YAV7_PRUAR3.560e-1143.01Fe2OG dioxygenase domain-containing protein n=6 Ta... [more]
R1B422_EMIHU7.670e-1138.78Fe2OG dioxygenase domain-containing protein n=3 Ta... [more]
A0A834ZM60_9MAGN1.140e-1045.05Uncharacterized protein n=1 Tax=Tetracentron sinen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1975contigP-wetherbeei_contig1975:5054..5471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4558.Sb01g014560.1
PFAMs2OG-FeII_Oxy,DIOX_N
Model size327
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.44e-15
EggNOG OGsCOG3491@1|root,KOG0143@2759|Eukaryota,37JYU@33090|Viridiplantae,3G8XN@35493|Streptophyta,3KUPH@4447|Liliopsida,3IE5T@38820|Poales
DescriptionBelongs to the iron ascorbate-dependent oxidoreductase family
Cds size327
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186180.5811365-CDS-P-wetherbeei_contig1975:5053..51821683186180.5811365-CDS-P-wetherbeei_contig1975:5053..5182Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1975 5054..5182 -
1683186180.5894315-CDS-P-wetherbeei_contig1975:5273..54711683186180.5894315-CDS-P-wetherbeei_contig1975:5273..5471Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1975 5274..5471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1975.2.1prot_P-wetherbeei_contig1975.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1975 5054..5471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1975.2.1

>prot_P-wetherbeei_contig1975.2.1 ID=prot_P-wetherbeei_contig1975.2.1|Name=mRNA_P-wetherbeei_contig1975.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
GDVVVERLGEAKISAILEGVPVIDIGSIIDPATHTREAKEAAAAAIAKAA
QGWGFFIVINHGVQSSLIARLRAASAAFFALPPACKDAVRRTATNYYGYF
NDEFTKQVR
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mRNA from alignment at P-wetherbeei_contig1975:5054..5471-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1975.2.1 ID=mRNA_P-wetherbeei_contig1975.2.1|Name=mRNA_P-wetherbeei_contig1975.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=418bp|location=Sequence derived from alignment at P-wetherbeei_contig1975:5054..5471- (Phaeothamnion wetherbeei SAG_119_79)
GGCGATGTCGTCGTCGAGAGGCTGGGGGAAGCGAAGATTTCTGCAATTCT CGAAGGCGTTCCAGTGATCGACATCGGCTCGATCATCGATCCTGCAACAC ATACGCGTGAAGCAAAGGAGGCGGCGGCGGCGGCTATCGCAAAAGCGGCG CAAGGGTGGGGTTTCTTTATTGTCATCAATCACGGCGTCCAATCTTCGGT GAGAAACACTTCTTTCCTTCCTTTCCTTTTGAATGTTGCTCGTAACCCTA ACCTTTGGATTCCCGATCGCTTTTTTCTCCATGCTGTAGCTGATTGCGCG GCTCCGGGCGGCCTCTGCAGCCTTCTTCGCGCTGCCTCCTGCGTGCAAGG ACGCCGTCCGGCGCACCGCGACCAACTACTACGGGTACTTCAACGACGAA TTCACCAAGCAGGTGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1975:5054..5471-

>mRNA_P-wetherbeei_contig1975.2.1 ID=mRNA_P-wetherbeei_contig1975.2.1|Name=mRNA_P-wetherbeei_contig1975.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig1975:5054..5471- (Phaeothamnion wetherbeei SAG_119_79)
GGCGATGTCGTCGTCGAGAGGCTGGGGGAAGCGAAGATTTCTGCAATTCT
CGAAGGCGTTCCAGTGATCGACATCGGCTCGATCATCGATCCTGCAACAC
ATACGCGTGAAGCAAAGGAGGCGGCGGCGGCGGCTATCGCAAAAGCGGCG
CAAGGGTGGGGTTTCTTTATTGTCATCAATCACGGCGTCCAATCTTCGCT
GATTGCGCGGCTCCGGGCGGCCTCTGCAGCCTTCTTCGCGCTGCCTCCTG
CGTGCAAGGACGCCGTCCGGCGCACCGCGACCAACTACTACGGGTACTTC
AACGACGAATTCACCAAGCAGGTGCGC
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